Sphingomonas paucimobilis strain FDAARGOS_908 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (02-DEC-2020) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP065669.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.7\nGenome Coverage :: 849.08x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 15:15:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,081\nCDSs (total) :: 4,014\nGenes (coding) :: 3,967\nCDSs (with protein) :: 3,967\nGenes (RNA) :: 67\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 23 of 47\nPseudo Genes (incomplete) :: 31 of 47\nPseudo Genes (internal stop) :: 5 of 47\nPseudo Genes (multiple problems) :: 11 of 47\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Sphingomonas paucimobilis
COORDINATES: similar to AA sequence:RefSeq:WP_010217637.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018251258.1
arsenic resistance N-acetyltransferase ArsN2
COORDINATES: similar to AA sequence:RefSeq:WP_008262206.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018251265.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950591.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_018251263.1
COORDINATES: protein motif:HMM:NF012870.2
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013041396.1
COORDINATES: similar to AA sequence:RefSeq:WP_011542358.1
COORDINATES: similar to AA sequence:RefSeq:WP_011540697.1
COORDINATES: protein motif:HMM:NF027219.2
COORDINATES: similar to AA sequence:RefSeq:WP_010185723.1
GO:0004619 - phosphoglycerate mutase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
2,3-diphosphoglycerate-dependent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_004212667.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010404824.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011253226.1
bifunctional transaldolase/phosoglucose isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_019831499.1
GO:0004802 - transketolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022391.2
COORDINATES: similar to AA sequence:RefSeq:WP_010161711.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008603814.1
COORDINATES: similar to AA sequence:RefSeq:WP_014076972.1
COORDINATES: similar to AA sequence:RefSeq:WP_014077236.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459640.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459639.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003480246.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010186557.1
GO:0008853 - exodeoxyribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017502223.1
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006310245.1
COORDINATES: similar to AA sequence:RefSeq:WP_011413799.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950488.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339740.1
COORDINATES: similar to AA sequence:RefSeq:WP_008829880.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054787.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011950430.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008829877.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405780.1
COORDINATES: similar to AA sequence:RefSeq:WP_015460600.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405783.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339732.1
COORDINATES: similar to AA sequence:RefSeq:WP_008829869.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015549.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010405790.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010339725.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219942.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950504.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950505.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339722.1
COORDINATES: similar to AA sequence:RefSeq:WP_008829640.1
COORDINATES: similar to AA sequence:RefSeq:WP_010124614.1
COORDINATES: similar to AA sequence:RefSeq:WP_006953756.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503651.1
COORDINATES: similar to AA sequence:RefSeq:WP_013040147.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405796.1
COORDINATES: similar to AA sequence:RefSeq:WP_010409098.1
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011950517.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183274.1
COORDINATES: similar to AA sequence:RefSeq:WP_013846908.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339712.1
COORDINATES: similar to AA sequence:RefSeq:WP_013846910.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054428.1
COORDINATES: similar to AA sequence:RefSeq:WP_013846912.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339708.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339707.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819415.1
COORDINATES: similar to AA sequence:RefSeq:WP_008829636.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950521.1
COORDINATES: similar to AA sequence:RefSeq:WP_010124620.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339702.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020819409.1
reverse transcriptase domain-containing protein
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019054348.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007015482.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018250461.1
COORDINATES: similar to AA sequence:RefSeq:WP_010124626.1
COORDINATES: similar to AA sequence:RefSeq:WP_009823443.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212858.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212859.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011950798.1
COORDINATES: similar to AA sequence:RefSeq:WP_018061636.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406724.1
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010408866.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012488.2
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014266468.1
COORDINATES: protein motif:HMM:NF024580.2
COORDINATES: similar to AA sequence:RefSeq:WP_008829948.1
COORDINATES: similar to AA sequence:RefSeq:WP_007164280.1
COORDINATES: similar to AA sequence:RefSeq:WP_015928877.1
COORDINATES: similar to AA sequence:RefSeq:WP_014076987.1
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010339795.1
COORDINATES: similar to AA sequence:RefSeq:WP_008832021.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406700.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818512.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010339791.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054296.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339789.1
COORDINATES: similar to AA sequence:RefSeq:WP_015460523.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_011950625.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_010339786.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_007406582.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339784.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339783.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406613.1
COORDINATES: similar to AA sequence:RefSeq:WP_008829963.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339780.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_006953577.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406603.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_010339777.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406589.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_010339775.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_010339774.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339773.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339772.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406581.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339770.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015600.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012115015.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004905479.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013836837.1
COORDINATES: similar to AA sequence:RefSeq:WP_012346469.1
COORDINATES: similar to AA sequence:RefSeq:WP_018266651.1
COORDINATES: protein motif:HMM:NF025605.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012257.2
cyclic nucleotide-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007405000.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019368878.1
COORDINATES: similar to AA sequence:RefSeq:WP_006560511.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004374506.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_020297996.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818351.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_020818487.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010339469.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014076992.1
COORDINATES: protein motif:HMM:NF013188.2
GO:0015299 - solute:proton antiporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_007406609.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO:0015299 - solute:proton antiporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
YbaL family putative K(+) efflux transporter
COORDINATES: similar to AA sequence:RefSeq:WP_010339461.1
GO:0008808 - cardiolipin synthase activity [Evidence IEA]
GO:0032049 - cardiolipin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020209927.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010339459.1
COORDINATES: similar to AA sequence:RefSeq:WP_014076994.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010339457.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010339455.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339454.1
COORDINATES: similar to AA sequence:RefSeq:WP_010408731.1
COORDINATES: similar to AA sequence:RefSeq:WP_019832564.1
GO:0019867 - outer membrane [Evidence IEA]
glycine zipper 2TM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010339448.1
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010339447.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0005515 - protein binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010339446.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012520277.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006662 - glycerol ether metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016674.2
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014076995.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339443.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406284.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339442.1
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010339440.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339439.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339438.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212666.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010339436.1
DnaJ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006023631.1
COORDINATES: similar to AA sequence:RefSeq:WP_013232610.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406245.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339434.1
COORDINATES: similar to AA sequence:RefSeq:WP_003041865.1
COORDINATES: similar to AA sequence:RefSeq:WP_010544847.1
COORDINATES: similar to AA sequence:RefSeq:WP_017977536.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_020820384.1
COORDINATES: similar to AA sequence:RefSeq:WP_015596990.1
COORDINATES: protein motif:HMM:NF025056.2
COORDINATES: similar to AA sequence:RefSeq:WP_018264113.1
COORDINATES: protein motif:HMM:TIGR01439.1
COORDINATES: similar to AA sequence:RefSeq:WP_015042061.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008830650.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830651.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406242.1
COORDINATES: similar to AA sequence:RefSeq:WP_011632198.1
COORDINATES: similar to AA sequence:RefSeq:WP_007254357.1
COORDINATES: protein motif:HMM:NF014373.2
COORDINATES: similar to AA sequence:RefSeq:WP_012452242.1
COORDINATES: similar to AA sequence:RefSeq:WP_012252042.1
COORDINATES: similar to AA sequence:RefSeq:WP_015669315.1
COORDINATES: similar to AA sequence:RefSeq:WP_011299921.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_007686136.1
voltage-gated chloride channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018042929.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406260.1
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_017980798.1
COORDINATES: similar to AA sequence:RefSeq:WP_017980799.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004213258.1
GDCCVxC domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_004213260.1
COORDINATES: similar to AA sequence:RefSeq:WP_007016074.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007016076.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_004213265.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213266.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213267.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014072607.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213269.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014072605.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_007016080.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251363.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606217.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165392.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182946.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213304.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015527.1
COORDINATES: similar to AA sequence:RefSeq:WP_019517916.1
COORDINATES: similar to AA sequence:RefSeq:WP_014414412.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824028.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212864.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212865.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039112.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406847.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212870.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017183571.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039111.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004212877.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018251219.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_020820506.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368192.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368193.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
flagellar hook-basal body complex protein FliE
COORDINATES: similar to AA sequence:RefSeq:WP_007406841.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251224.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212882.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212885.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212886.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368198.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251228.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406863.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406854.1
COORDINATES: similar to AA sequence:RefSeq:WP_010501318.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611592.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009492323.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406858.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015499447.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251232.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406848.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251235.1
COORDINATES: protein motif:HMM:NF018630.2
COORDINATES: similar to AA sequence:RefSeq:WP_007406849.1
GO:0015099 - nickel cation transmembrane transporter activity [Evidence IEA]
GO:0035444 - nickel cation transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010165246.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00080
yybP-ykoY riboswitch is a manganese riboswitch that directly binds Mn; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012813057.1
manganese efflux pump MntP family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019054169.1
COORDINATES: similar to AA sequence:RefSeq:WP_017182894.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503677.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251241.1
COORDINATES: similar to AA sequence:RefSeq:WP_014283799.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344785.1
COORDINATES: similar to AA sequence:RefSeq:WP_005103117.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668593.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251248.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611976.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183665.1
COORDINATES: similar to AA sequence:RefSeq:WP_011542831.1
COORDINATES: similar to AA sequence:RefSeq:WP_007407012.1
COORDINATES: similar to AA sequence:RefSeq:WP_014075654.1
COORDINATES: similar to AA sequence:RefSeq:WP_017980773.1
COORDINATES: similar to AA sequence:RefSeq:WP_017980774.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251208.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251209.1
COORDINATES: similar to AA sequence:RefSeq:WP_017980777.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212951.1
COORDINATES: similar to AA sequence:RefSeq:WP_017980779.1
COORDINATES: similar to AA sequence:RefSeq:WP_017980780.1
COORDINATES: similar to AA sequence:RefSeq:WP_017980781.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219226.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017980784.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_018251214.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_010219223.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368249.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165216.1
GO:0042597 - periplasmic space [Evidence IEA]
copper homeostasis periplasmic binding protein CopC
COORDINATES: similar to AA sequence:RefSeq:WP_017980789.1
copper homeostasis membrane protein CopD
COORDINATES: similar to AA sequence:RefSeq:WP_017980790.1
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007407020.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020486672.1
COORDINATES: similar to AA sequence:RefSeq:WP_017980793.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219218.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010188993.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017980796.1
COORDINATES: similar to AA sequence:RefSeq:WP_017980797.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF014465.2
COORDINATES: similar to AA sequence:RefSeq:WP_017980802.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212880.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183574.1
COORDINATES: similar to AA sequence:RefSeq:WP_010512303.1
COORDINATES: similar to AA sequence:RefSeq:WP_016510828.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368646.1
COORDINATES: similar to AA sequence:RefSeq:WP_010542887.1
COORDINATES: similar to AA sequence:RefSeq:WP_010123208.1
COORDINATES: similar to AA sequence:RefSeq:WP_010667355.1
COORDINATES: similar to AA sequence:RefSeq:WP_010667356.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212962.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011952129.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368260.1
COORDINATES: similar to AA sequence:RefSeq:WP_017980819.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368261.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503418.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368263.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503420.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830624.1
COORDINATES: similar to AA sequence:RefSeq:WP_010337663.1
COORDINATES: similar to AA sequence:RefSeq:WP_016744734.1
COORDINATES: similar to AA sequence:RefSeq:WP_009821112.1
COORDINATES: similar to AA sequence:RefSeq:WP_016744732.1
COORDINATES: similar to AA sequence:RefSeq:WP_010165237.1
COORDINATES: similar to AA sequence:RefSeq:WP_004210818.1
COORDINATES: similar to AA sequence:RefSeq:WP_016744735.1
COORDINATES: similar to AA sequence:RefSeq:WP_010337660.1
COORDINATES: protein motif:HMM:NF025107.2
COORDINATES: similar to AA sequence:RefSeq:WP_004213255.1
COORDINATES: similar to AA sequence:RefSeq:WP_014072603.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213251.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213249.1
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004213247.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015449233.1
COORDINATES: similar to AA sequence:RefSeq:WP_010542917.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251256.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.