Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.
Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids
Submitted (02-AUG-2013) Department of Bacterial Genetics, University of Warsaw, Faculty of Biology, Institute of Microbiology, Miecznikowa 1, Warsaw 02-096, Poland
REFSEQ INFORMATION: The reference sequence is identical to\nCP006652.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler de novo assembler software\n (Roche) v. 2.6\nReference-guided Assembly :: partially based on Paracoccus\n denitrificans PD1222\nGenome Coverage :: 30-50X\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/14/2022 12:16:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,704\nCDSs (total) :: 4,629\nGenes (coding) :: 4,565\nCDSs (with protein) :: 4,565\nGenes (RNA) :: 75\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 3\nPseudo Genes (total) :: 64\nCDSs (without protein) :: 64\nPseudo Genes (ambiguous residues) :: 0 of 64\nPseudo Genes (frameshifted) :: 24 of 64\nPseudo Genes (incomplete) :: 49 of 64\nPseudo Genes (internal stop) :: 18 of 64\nPseudo Genes (multiple problems) :: 21 of 64\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012643364.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009804006.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331263.1
COORDINATES: protein motif:HMM:TIGR01785.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor
COORDINATES: protein motif:HMM:NF017775.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF017022.2
COORDINATES: similar to AA sequence:RefSeq:WP_013384111.1
COORDINATES: similar to AA sequence:RefSeq:WP_011650207.1
COORDINATES: similar to AA sequence:RefSeq:WP_010225314.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008125493.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384274.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172458.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139471.1
COORDINATES: similar to AA sequence:RefSeq:WP_018190108.1
COORDINATES: similar to AA sequence:RefSeq:WP_006350228.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879070.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009210474.1
COORDINATES: similar to AA sequence:RefSeq:WP_017265154.1
COORDINATES: similar to AA sequence:RefSeq:WP_003058876.1
COORDINATES: similar to AA sequence:RefSeq:WP_013851118.1
COORDINATES: similar to AA sequence:RefSeq:WP_020813132.1
COORDINATES: similar to AA sequence:RefSeq:WP_012042764.1
COORDINATES: similar to AA sequence:RefSeq:WP_009635378.1
COORDINATES: similar to AA sequence:RefSeq:WP_007534419.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001299.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003088621.1
COORDINATES: similar to AA sequence:RefSeq:WP_007799266.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_020093096.1
transporter substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF015799.2
COORDINATES: similar to AA sequence:RefSeq:WP_020093098.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]; GO:0033219 - urea binding [Evidence IEA]
GO:0015840 - urea transport [Evidence IEA]
urea ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015499587.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_015687145.1
branched-chain amino acid ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_020093101.1
COORDINATES: similar to AA sequence:RefSeq:WP_011473456.1
COORDINATES: similar to AA sequence:RefSeq:WP_012320259.1
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013068585.1
COORDINATES: similar to AA sequence:RefSeq:WP_011339370.1
GO:0071518 - autoinducer-2 kinase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0009372 - quorum sensing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002724353.1
COORDINATES: similar to AA sequence:RefSeq:WP_005623990.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:1905887 - autoinducer AI-2 transmembrane transport [Evidence IEA]
autoinducer 2 ABC transporter ATP-binding protein LsrA
COORDINATES: similar to AA sequence:RefSeq:WP_009756398.1
with LsrADB is involved in the transport of autoindiuce 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
ribose/xylose/arabinose/galactoside ABC-type transport systems, permease component
COORDINATES: similar to AA sequence:RefSeq:WP_003533128.1
with IsrABC is involved with autoinducer 2 import; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017271136.1
autoinducer 2 ABC transporter substrate-binding protein LsrB
COORDINATES: similar to AA sequence:RefSeq:WP_011842125.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011339153.1
COORDINATES: similar to AA sequence:RefSeq:WP_013895385.1
GO:0030429 - kynureninase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011750964.1
COORDINATES: similar to AA sequence:RefSeq:WP_002716776.1
GO:0016901 - oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor [Evidence IEA]
GO:0006089 - lactate metabolic process [Evidence IEA]; GO:0019516 - lactate oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010397074.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750929.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397079.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750927.1
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR01733.1
amino acid adenylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012235886.1
COORDINATES: similar to AA sequence:RefSeq:WP_005614110.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005614109.1
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_017875539.1
lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF013219.2
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: protein motif:HMM:TIGR01783.1
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF012402.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012070815.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014176.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_003300838.1
COORDINATES: similar to AA sequence:RefSeq:WP_014183842.1
nucleobase:cation symporter-2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014263704.1
GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019170046.1
COORDINATES: similar to AA sequence:RefSeq:WP_015667401.1
COORDINATES: similar to AA sequence:RefSeq:WP_019170048.1
COORDINATES: similar to AA sequence:RefSeq:WP_019170049.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812277.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649873.1
COORDINATES: similar to AA sequence:RefSeq:WP_012885854.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014881428.1
GO:0047689 - aspartate racemase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011241939.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018387328.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012485147.1
COORDINATES: similar to AA sequence:RefSeq:WP_006315505.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001150.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654144.1
COORDINATES: similar to AA sequence:RefSeq:WP_008125813.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019019012.1
COORDINATES: similar to AA sequence:RefSeq:WP_017505121.1
COORDINATES: similar to AA sequence:RefSeq:WP_020808181.1
COORDINATES: similar to AA sequence:RefSeq:WP_017348232.1
COORDINATES: similar to AA sequence:RefSeq:WP_013511812.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653390.1
COORDINATES: similar to AA sequence:RefSeq:WP_006945383.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653397.1
COORDINATES: similar to AA sequence:RefSeq:WP_017348227.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010983000.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_020074765.1
COORDINATES: protein motif:HMM:NF019640.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017348221.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
This protein belongs to a clade of FMN-dependent monooxygenases, within a broader family of flavin-dependent oxidoreductases, the luciferase-like monooxygenase (LMM) family, some of whose members use coenzyme F420 rather than FMN; Derived by automated computational analysis using gene prediction method: Protein Homology.
NtaA/DmoA family FMN-dependent monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_006938207.1
COORDINATES: protein motif:HMM:TIGR01891.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859504.1
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: similar to AA sequence:RefSeq:WP_007637382.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992323.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448979.1
COORDINATES: similar to AA sequence:RefSeq:WP_014763196.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576483.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018900958.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010137783.1
helix-turn-helix domain-containing GNAT family N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_010659844.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004932127.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139752.1
COORDINATES: similar to AA sequence:RefSeq:WP_018898830.1
COORDINATES: similar to AA sequence:RefSeq:WP_018067602.1
COORDINATES: similar to AA sequence:RefSeq:WP_014761789.1
COORDINATES: similar to AA sequence:RefSeq:WP_015243091.1
COORDINATES: similar to AA sequence:RefSeq:WP_008875373.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918325.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF024921.2
COORDINATES: similar to AA sequence:RefSeq:WP_011747493.1
COORDINATES: similar to AA sequence:RefSeq:WP_020174980.1
COORDINATES: protein motif:HMM:NF024825.2
COORDINATES: protein motif:HMM:NF039482.1
GO:0003951 - NAD+ kinase activity [Evidence IEA]
GO:0006741 - NADP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017849124.1
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase subunit GcvPA
COORDINATES: similar to AA sequence:RefSeq:WP_007296139.1
aminomethyl-transferring glycine dehydrogenase subunit GcvPB
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF014757.2
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024900.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: protein motif:HMM:TIGR02431.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_019198347.1
COORDINATES: similar to AA sequence:RefSeq:WP_007178602.1
COORDINATES: protein motif:HMM:NF012904.2
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013697598.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007800919.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011456943.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011545257.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018184016.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018184015.1
COORDINATES: similar to AA sequence:RefSeq:WP_019409915.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_018699730.1
2,4'-dihydroxyacetophenone dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013900444.1
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: similar to AA sequence:RefSeq:WP_014249549.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437645.1
COORDINATES: similar to AA sequence:RefSeq:WP_008372023.1
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_014129495.1
COORDINATES: similar to AA sequence:RefSeq:WP_017709846.1
COORDINATES: similar to AA sequence:RefSeq:WP_020202511.1
GO:0015297 - antiporter activity [Evidence IEA]; GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012649488.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918345.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918344.1
COORDINATES: similar to AA sequence:RefSeq:WP_007878997.1
COORDINATES: similar to AA sequence:RefSeq:WP_007690434.1
COORDINATES: similar to AA sequence:RefSeq:WP_012890537.1
COORDINATES: protein motif:HMM:NF012517.2
COORDINATES: similar to AA sequence:RefSeq:WP_011488408.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469870.1
COORDINATES: similar to AA sequence:RefSeq:WP_006403500.1
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003524717.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918347.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008874511.1
COORDINATES: similar to AA sequence:RefSeq:WP_007697371.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550045.1
COORDINATES: similar to AA sequence:RefSeq:WP_003069528.1
COORDINATES: similar to AA sequence:RefSeq:WP_007434603.1
COORDINATES: similar to AA sequence:RefSeq:WP_019012814.1
COORDINATES: similar to AA sequence:RefSeq:WP_008942656.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011339331.1
COORDINATES: protein motif:HMM:NF012354.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012656.2
COORDINATES: similar to AA sequence:RefSeq:WP_015064840.1
COORDINATES: similar to AA sequence:RefSeq:WP_008029961.1
COORDINATES: similar to AA sequence:RefSeq:WP_007605368.1
COORDINATES: similar to AA sequence:RefSeq:WP_007814853.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559722.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749763.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012428.2
aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:NF015445.2
TRAP transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: protein motif:HMM:NF018513.2
COORDINATES: similar to AA sequence:RefSeq:WP_005030906.1
COORDINATES: similar to AA sequence:RefSeq:WP_005979656.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015343351.1
hydrogen peroxide-inducible genes activator
COORDINATES: similar to AA sequence:RefSeq:WP_002720011.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009572582.1
COORDINATES: similar to AA sequence:RefSeq:WP_011812091.1
COORDINATES: similar to AA sequence:RefSeq:WP_015920565.1
COORDINATES: similar to AA sequence:RefSeq:WP_015920566.1
COORDINATES: similar to AA sequence:RefSeq:WP_002720016.1
COORDINATES: similar to AA sequence:RefSeq:WP_002720017.1
methane/phenol/toluene hydroxylase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_020952385.1
GO:0004803 - transposase activity [Evidence IEA]
IS5-like element ISPam1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_009572588.1
2Fe-2S iron-sulfur cluster binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009562115.1
methane/phenol/toluene hydroxylase subunit alpha
COORDINATES: protein motif:HMM:NF024298.2
COORDINATES: similar to AA sequence:RefSeq:WP_008883656.1
COORDINATES: protein motif:HMM:NF016827.2
COORDINATES: similar to AA sequence:RefSeq:WP_013067896.1
COORDINATES: similar to AA sequence:RefSeq:WP_010324809.1
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_010439180.1
isocitrate lyase/phosphoenolpyruvate mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011910413.1
COORDINATES: similar to AA sequence:RefSeq:WP_013065895.1
COORDINATES: protein motif:HMM:NF013126.2
COORDINATES: similar to AA sequence:RefSeq:WP_012476889.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004886533.1
COORDINATES: similar to AA sequence:RefSeq:WP_013892603.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383125.1
COORDINATES: similar to AA sequence:RefSeq:WP_009763795.1
COORDINATES: similar to AA sequence:RefSeq:WP_009763794.1
COORDINATES: similar to AA sequence:RefSeq:WP_007751033.1
COORDINATES: similar to AA sequence:RefSeq:WP_019170708.1
COORDINATES: similar to AA sequence:RefSeq:WP_010693368.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020184743.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004021723.1
COORDINATES: similar to AA sequence:RefSeq:WP_012566965.1
COORDINATES: similar to AA sequence:RefSeq:WP_002722067.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004124380.1
COORDINATES: similar to AA sequence:RefSeq:WP_011326331.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_018428917.1
COORDINATES: similar to AA sequence:RefSeq:WP_003327063.1
COORDINATES: protein motif:HMM:NF014636.2
COORDINATES: protein motif:HMM:NF004281.0
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
molybdopterin-synthase adenylyltransferase MoeB
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: protein motif:HMM:NF025394.2
thiopeptide-type bacteriocin biosynthesis protein
COORDINATES: protein motif:HMM:TIGR03604.1
COORDINATES: protein motif:HMM:TIGR03882.1
TOMM precursor leader peptide-binding protein
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: similar to AA sequence:RefSeq:WP_018444367.1
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: protein motif:HMM:TIGR00702.1
COORDINATES: protein motif:HMM:NF019429.2
COORDINATES: protein motif:HMM:TIGR01730.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:YP_005227318.1
COORDINATES: similar to AA sequence:RefSeq:WP_007399479.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007792990.1
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: similar to AA sequence:RefSeq:WP_013385517.1
COORDINATES: similar to AA sequence:RefSeq:WP_013385516.1
COORDINATES: similar to AA sequence:RefSeq:WP_007818547.1
COORDINATES: similar to AA sequence:RefSeq:WP_006483372.1
GO:0016853 - isomerase activity [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012976179.1
COORDINATES: similar to AA sequence:RefSeq:WP_018634351.1
COORDINATES: similar to AA sequence:RefSeq:WP_020043474.1
COORDINATES: similar to AA sequence:RefSeq:WP_019298074.1
COORDINATES: similar to AA sequence:RefSeq:WP_014890651.1
COORDINATES: similar to AA sequence:RefSeq:WP_010502945.1
COORDINATES: similar to AA sequence:RefSeq:WP_012385521.1
COORDINATES: similar to AA sequence:RefSeq:WP_007822574.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329485.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246846.1
COORDINATES: similar to AA sequence:RefSeq:WP_007426468.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436293.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436294.1
COORDINATES: similar to AA sequence:RefSeq:WP_012708510.1
COORDINATES: similar to AA sequence:RefSeq:WP_015315139.1
COORDINATES: similar to AA sequence:RefSeq:WP_003567913.1
COORDINATES: similar to AA sequence:RefSeq:WP_007004779.1
COORDINATES: similar to AA sequence:RefSeq:WP_020655769.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009825428.1
protein-methionine-sulfoxide reductase heme-binding subunit MsrQ
COORDINATES: similar to AA sequence:RefSeq:WP_010392237.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0016667 - oxidoreductase activity, acting on a sulfur group of donors [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]
protein-methionine-sulfoxide reductase catalytic subunit MsrP
COORDINATES: similar to AA sequence:RefSeq:WP_015279455.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018264.2
COORDINATES: similar to AA sequence:RefSeq:WP_017993379.1
COORDINATES: protein motif:HMM:TIGR01509.1
COORDINATES: similar to AA sequence:RefSeq:WP_010176453.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750901.1
COORDINATES: similar to AA sequence:RefSeq:WP_011148266.1
COORDINATES: similar to AA sequence:RefSeq:WP_014618694.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008161080.1
COORDINATES: similar to AA sequence:RefSeq:WP_009764421.1
COORDINATES: similar to AA sequence:RefSeq:WP_011048268.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001545.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611129.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611638.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_043766072.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528799.1
COORDINATES: similar to AA sequence:RefSeq:WP_020038279.1
COORDINATES: protein motif:HMM:NF015043.2
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018041694.1
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: similar to AA sequence:RefSeq:WP_019575860.1
COORDINATES: protein motif:HMM:NF024989.2
COORDINATES: similar to AA sequence:RefSeq:WP_014745013.1
COORDINATES: similar to AA sequence:RefSeq:WP_014745012.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545991.1
COORDINATES: similar to AA sequence:RefSeq:WP_006478070.1
COORDINATES: similar to AA sequence:RefSeq:WP_020009338.1
COORDINATES: similar to AA sequence:RefSeq:WP_018927610.1
COORDINATES: protein motif:HMM:NF024894.2
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611359.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025034.2
COORDINATES: similar to AA sequence:RefSeq:WP_007668193.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: similar to AA sequence:RefSeq:WP_010974153.1
COORDINATES: similar to AA sequence:RefSeq:WP_010160415.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007120058.1
This protein belongs to the uracil DNA glycosylase superfamily, members of which act in excision repair of DNA. However, it belongs more specifically to UdgX branch, whose founding member was found to bind uracil in DNA (where it does not belong), without cleaving it, appears to promote DNA repair by a pathway involving RecA, rather than base excision; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018001429.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
putative DNA modification/repair radical SAM protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611977.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011338834.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014743970.1
COORDINATES: similar to AA sequence:RefSeq:WP_010911436.1
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
potassium-transporting ATPase subunit KdpC
COORDINATES: similar to AA sequence:RefSeq:WP_008386535.1
GO:0031004 - potassium ion-transporting ATPase complex [Evidence IEA]
potassium-transporting ATPase subunit KdpB
COORDINATES: similar to AA sequence:RefSeq:WP_007089844.1
potassium-transporting ATPase subunit KdpA
COORDINATES: similar to AA sequence:RefSeq:WP_007910034.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0043462 - regulation of ATP-dependent activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024795.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611865.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF025063.2
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF012870.2
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: protein motif:HMM:NF020137.2
GO:0005615 - extracellular space [Evidence IEA]
GO:0005509 - calcium ion binding [Evidence IEA]
M10 family metallopeptidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013067073.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611339.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611946.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006954973.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611808.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018001068.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998642.1
ligase-associated DNA damage response exonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_010398483.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
cisplatin damage response ATP-dependent DNA ligase
COORDINATES: similar to AA sequence:RefSeq:WP_008031688.1
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
ligase-associated DNA damage response DEXH box helicase
COORDINATES: similar to AA sequence:RefSeq:WP_011746761.1
ligase-associated DNA damage response endonuclease PdeM
COORDINATES: similar to AA sequence:RefSeq:WP_006560454.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006890153.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019298527.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633742.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015411 - ABC-type taurine transporter transporter activity [Evidence IEA]; GO:0030977 - taurine binding [Evidence IEA]
GO:0015734 - taurine transport [Evidence IEA]
taurine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010912496.1
COORDINATES: similar to AA sequence:RefSeq:WP_018749441.1