Paracoccus aminophilus JCM 7686 plasmid pAMI5, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.
Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids
Submitted (02-AUG-2013) Department of Bacterial Genetics, University of Warsaw, Faculty of Biology, Institute of Microbiology, Miecznikowa 1, Warsaw 02-096, Poland
REFSEQ INFORMATION: The reference sequence is identical to\nCP006653.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler de novo assembler software\n (Roche) v. 2.6\nReference-guided Assembly :: partially based on Paracoccus\n denitrificans PD1222\nGenome Coverage :: 30-50X\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/14/2022 12:16:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,704\nCDSs (total) :: 4,629\nGenes (coding) :: 4,565\nCDSs (with protein) :: 4,565\nGenes (RNA) :: 75\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 3\nPseudo Genes (total) :: 64\nCDSs (without protein) :: 64\nPseudo Genes (ambiguous residues) :: 0 of 64\nPseudo Genes (frameshifted) :: 24 of 64\nPseudo Genes (incomplete) :: 49 of 64\nPseudo Genes (internal stop) :: 18 of 64\nPseudo Genes (multiple problems) :: 21 of 64\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008229542.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011911177.1
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016464.2
COORDINATES: similar to AA sequence:RefSeq:WP_007753458.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747614.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394990.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747616.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997973.1
COORDINATES: protein motif:HMM:NF037701.2
COORDINATES: similar to AA sequence:RefSeq:WP_018045651.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF007866.0
GO:0022857 - transmembrane transporter activity [Evidence IEA]
Fe(3+)-hydroxamate ABC transporter permease FhuB
COORDINATES: protein motif:HMM:NF013648.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR01783.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000988.1
TMAO reductase system periplasmic protein TorT
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_018000990.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018000991.1
COORDINATES: similar to AA sequence:RefSeq:WP_008281805.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
Members of the family are the ATP-binding subunit of ABC transporters for substrates such as betaine, L-proline or other amino acids, choline, carnitine, etc. The substrate specificity is best determined from the substrate-binding subunit, rather than this subunit, as it interacts with the permease subunit and not with substrate directly; Derived by automated computational analysis using gene prediction method: Protein Homology.
betaine/proline/choline family ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009816019.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011537023.1
COORDINATES: similar to AA sequence:RefSeq:WP_017502083.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_017502060.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_010394274.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008197251.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803906.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010394599.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018000586.1
COORDINATES: similar to AA sequence:RefSeq:WP_001206197.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003052798.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398612.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018858063.1
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003085940.1
COORDINATES: similar to AA sequence:RefSeq:WP_009113549.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011534423.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013511415.1
COORDINATES: similar to AA sequence:RefSeq:WP_019298513.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015343394.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006133452.1
COORDINATES: similar to AA sequence:RefSeq:WP_017929857.1
COORDINATES: protein motif:HMM:NF025343.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: similar to AA sequence:RefSeq:WP_013067829.1
COORDINATES: similar to AA sequence:RefSeq:WP_004687213.1
Fe(3+) ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006469079.1
COORDINATES: protein motif:HMM:NF017652.2
GO:0016740 - transferase activity [Evidence IEA]
GO:0019475 - L-lysine catabolic process to acetate [Evidence IEA]
3-keto-5-aminohexanoate cleavage protein
COORDINATES: protein motif:HMM:NF014071.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007874381.1
COORDINATES: protein motif:HMM:NF014567.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024825.2
COORDINATES: similar to AA sequence:RefSeq:WP_008058659.1
COORDINATES: similar to AA sequence:RefSeq:WP_020165097.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001154.1
COORDINATES: protein motif:HMM:NF039979.1
COORDINATES: similar to AA sequence:RefSeq:WP_007791754.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010657870.1
COORDINATES: similar to AA sequence:RefSeq:WP_009763095.1
COORDINATES: protein motif:HMM:NF012415.2
COORDINATES: similar to AA sequence:RefSeq:WP_007679639.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397496.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada
COORDINATES: similar to AA sequence:RefSeq:WP_004122054.1
COORDINATES: protein motif:HMM:NF021158.2
COORDINATES: similar to AA sequence:RefSeq:WP_018066360.1
COORDINATES: similar to AA sequence:RefSeq:WP_011746988.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396661.1
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF012401.2
COORDINATES: similar to AA sequence:RefSeq:WP_009178255.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_003531919.1
lysylphosphatidylglycerol synthase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005855837.1
COORDINATES: similar to AA sequence:RefSeq:WP_007146420.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016927720.1
COORDINATES: similar to AA sequence:RefSeq:WP_003529494.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011751344.1
COORDINATES: similar to AA sequence:RefSeq:WP_006201378.1
COORDINATES: similar to AA sequence:RefSeq:WP_020952554.1
GO:0004803 - transposase activity [Evidence IEA]
IS5-like element ISPam2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_020479468.1
COORDINATES: protein motif:HMM:NF025054.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013862.2
cyclic nucleotide-binding and patatin-like phospholipase domain-containing protein
COORDINATES: protein motif:HMM:NF017076.2
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018271758.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384079.1
COORDINATES: similar to AA sequence:RefSeq:WP_016344662.1
COORDINATES: similar to AA sequence:RefSeq:WP_010914224.1
COORDINATES: similar to AA sequence:RefSeq:WP_014538142.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011982537.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879086.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396537.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517728.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396541.1
COORDINATES: protein motif:HMM:NF024795.2
COORDINATES: protein motif:HMM:NF015669.2
COORDINATES: protein motif:HMM:NF016060.2
COORDINATES: protein motif:HMM:NF013530.2
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: similar to AA sequence:RefSeq:WP_010140437.1
GO:0008832 - dGTPase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007796701.1
COORDINATES: similar to AA sequence:RefSeq:WP_009562737.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011751207.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394289.1
GO:0047134 - protein-disulfide reductase (NAD(P)) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: similar to AA sequence:RefSeq:WP_002722783.1
COORDINATES: protein motif:HMM:NF025903.2
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_020514137.1
COORDINATES: similar to AA sequence:RefSeq:WP_004344382.1
COORDINATES: similar to AA sequence:RefSeq:WP_014241398.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_016558233.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674075.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735365.1
COORDINATES: similar to AA sequence:RefSeq:WP_006480108.1
COORDINATES: similar to AA sequence:RefSeq:WP_018388332.1
COORDINATES: similar to AA sequence:RefSeq:WP_013844663.1
COORDINATES: similar to AA sequence:RefSeq:WP_009505447.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008987 - quinolinate synthetase A activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007118450.1
GO:0008734 - L-aspartate oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010395923.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
carboxylating nicotinate-nucleotide diphosphorylase
COORDINATES: similar to AA sequence:RefSeq:WP_008874733.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018001049.1
GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012707.2
COORDINATES: similar to AA sequence:RefSeq:WP_011582207.1
PQQ-binding-like beta-propeller repeat protein
COORDINATES: protein motif:HMM:NF024834.2
COORDINATES: similar to AA sequence:RefSeq:WP_013385373.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633976.1
COORDINATES: similar to AA sequence:RefSeq:WP_011581414.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564366.1
COORDINATES: similar to AA sequence:RefSeq:WP_014131234.1
COORDINATES: similar to AA sequence:RefSeq:WP_019402244.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747520.1
COORDINATES: similar to AA sequence:RefSeq:WP_018009470.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643407.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010396497.1
COORDINATES: similar to AA sequence:RefSeq:WP_007878846.1
PepSY-associated TM helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014036161.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394455.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886165.1
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: similar to AA sequence:RefSeq:WP_009805349.1
COORDINATES: similar to AA sequence:RefSeq:WP_011568589.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
phosphonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009815694.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
phosphonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006468363.1
COORDINATES: similar to AA sequence:RefSeq:WP_003499498.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010137458.1
COORDINATES: similar to AA sequence:RefSeq:WP_004522988.1
COORDINATES: similar to AA sequence:RefSeq:WP_007876205.1
COORDINATES: similar to AA sequence:RefSeq:WP_019860449.1
COORDINATES: similar to AA sequence:RefSeq:WP_002968376.1
COORDINATES: similar to AA sequence:RefSeq:WP_011660855.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012092549.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008509667.1
COORDINATES: similar to AA sequence:RefSeq:WP_007484022.1
COORDINATES: similar to AA sequence:RefSeq:WP_015318289.1
COORDINATES: protein motif:HMM:NF024860.2
COORDINATES: similar to AA sequence:RefSeq:WP_011749404.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398862.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010400456.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017998456.1
COORDINATES: similar to AA sequence:RefSeq:WP_007557655.1
COORDINATES: similar to AA sequence:RefSeq:WP_011350067.1
COORDINATES: similar to AA sequence:RefSeq:WP_007760574.1
COORDINATES: similar to AA sequence:RefSeq:WP_018063523.1
PLP-dependent cysteine synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010392219.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271790.1
COORDINATES: similar to AA sequence:RefSeq:WP_007528825.1
COORDINATES: similar to AA sequence:RefSeq:WP_003505657.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751080.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010397114.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751078.1
COORDINATES: similar to AA sequence:RefSeq:WP_018430249.1
COORDINATES: similar to AA sequence:RefSeq:WP_010975160.1
COORDINATES: similar to AA sequence:RefSeq:WP_006470610.1
COORDINATES: similar to AA sequence:RefSeq:WP_003449286.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007630108.1
GO:0015250 - water channel activity [Evidence IEA]
GO:0006833 - water transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012913.2
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_010400407.1
COORDINATES: similar to AA sequence:RefSeq:WP_008230572.1
GO:0016301 - kinase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003492098.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017491189.1
COORDINATES: similar to AA sequence:RefSeq:WP_004115468.1
COORDINATES: similar to AA sequence:RefSeq:WP_004433196.1
COORDINATES: similar to AA sequence:RefSeq:WP_003503982.1
COORDINATES: similar to AA sequence:RefSeq:WP_006468994.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342878.1
COORDINATES: similar to AA sequence:RefSeq:WP_019170983.1
COORDINATES: similar to AA sequence:RefSeq:WP_008971930.1
COORDINATES: similar to AA sequence:RefSeq:WP_020043034.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008621156.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010443234.1
GO:0045148 - tripeptide aminopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_018430819.1
COORDINATES: similar to AA sequence:RefSeq:WP_017997764.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748443.1
COORDINATES: similar to AA sequence:RefSeq:WP_014657463.1
COORDINATES: similar to AA sequence:RefSeq:WP_018324940.1
COORDINATES: similar to AA sequence:RefSeq:WP_016555716.1
COORDINATES: similar to AA sequence:RefSeq:WP_007606579.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018324943.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017999283.1
GO:0009306 - protein secretion [Evidence IEA]
translocation/assembly module TamB domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011748959.1
autotransporter assembly complex protein TamA
COORDINATES: similar to AA sequence:RefSeq:WP_017999281.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004340 - glucokinase activity [Evidence IEA]; GO:0005536 - glucose binding [Evidence IEA]
GO:0051156 - glucose 6-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011909909.1
GO:0004013 - adenosylhomocysteinase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010391836.1
COORDINATES: similar to AA sequence:RefSeq:WP_010391839.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017999265.1
COORDINATES: similar to AA sequence:RefSeq:WP_009825523.1
COORDINATES: similar to AA sequence:RefSeq:WP_015921322.1
3'(2'),5'-bisphosphate nucleotidase CysQ
COORDINATES: similar to AA sequence:RefSeq:WP_011748969.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999269.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999270.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748973.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748974.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999273.1
COORDINATES: similar to AA sequence:RefSeq:WP_008027463.1
flagellar hook-basal body complex protein
COORDINATES: protein motif:HMM:TIGR02492.1
GO:0009424 - bacterial-type flagellum hook [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF012874.2
COORDINATES: similar to AA sequence:RefSeq:WP_005607891.1
flagellar basal body P-ring protein FlgI
COORDINATES: similar to AA sequence:RefSeq:WP_012476889.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011976226.1
COORDINATES: similar to AA sequence:RefSeq:WP_013704254.1
COORDINATES: similar to AA sequence:RefSeq:WP_003586628.1
COORDINATES: similar to AA sequence:RefSeq:WP_008140046.1
COORDINATES: similar to AA sequence:RefSeq:WP_003857431.1
COORDINATES: similar to AA sequence:RefSeq:WP_011976227.1
COORDINATES: similar to AA sequence:RefSeq:WP_012483704.1
GO:0008721 - D-serine ammonia-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0046416 - D-amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002720841.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_003586621.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_008536382.1
COORDINATES: similar to AA sequence:RefSeq:WP_007802687.1
COORDINATES: similar to AA sequence:RefSeq:WP_010658237.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188828.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343273.1
GO:0004833 - tryptophan 2,3-dioxygenase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]