Lactococcus raffinolactis strain WiKim0068 plasmid pWiKim0068-2, complete sequence.
type: Entry
definition: Lactococcus raffinolactis strain WiKim0068 plasmid pWiKim0068-2, complete sequence.
sequence version: NZ_CP023394.1
sequence date: 2023-04-23
sequence: sequence
division: CON
label: NZ_CP023394.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07627433
keyword: RefSeq
source: Lactococcus raffinolactis
organism: Lactococcus raffinolactis
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP023394.1.\nBacteria and source DNA available from World Institute of Kimchi.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Assembly-Data-START##\nAssembly Method :: HGAP v. 3.0\nSequencing Technology :: PacBio\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 02:34:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,283\nCDSs (total) :: 2,212\nGenes (coding) :: 2,161\nCDSs (with protein) :: 2,161\nGenes (RNA) :: 71\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 51\nCDSs (without protein) :: 51\nPseudo Genes (ambiguous residues) :: 0 of 51\nPseudo Genes (frameshifted) :: 15 of 51\nPseudo Genes (incomplete) :: 33 of 51\nPseudo Genes (internal stop) :: 13 of 51\nPseudo Genes (multiple problems) :: 10 of 51\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 27065
topology: circular
so has quality: SO_0000988
location: 1..27065
location: region:1-27065:1
RO_0002162: 1366

NZ_CP023394
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07627433
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Lactococcus raffinolactis WiKim0068
author: Jung, M.Y.
author: Lee, S.H.
journal: Unpublished

2
title: Direct Submission
author: Jung, M.Y.
author: Lee, S.H.
journal: Submitted (11-SEP-2017) Microbiology and Functionality Research Group, World Institute of Kimchi, 86 Kimchi-Ro, Nam-Gu, Gwangju 61755, Republic of Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27065:1
position: 27065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-27065:1:source
so part of: sequence
organism: Lactococcus raffinolactis
mol type: genomic DNA
strain: WiKim0068
isolation source: kimchi
plasmid: pWiKim0068-2
country: South Korea:Gwangju
collection date: 2017-02-01

1366
type: Taxonomy
SIO_000068: taxonomy

CMV25_RS11155
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11155
old locus tag: CMV25_11155
so part of: sequence
location: join(25870..27065,1..196)
location: region:1-27065:1
so has part: feature:25870-27065:1:exon
so has part: feature:1-196:1:exon
subclass of: SO_0000010

47269186
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:25870-27065:1:exon

position:25870:1
position: 25870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-196:1:exon

position:196:1
position: 196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CMV25_RS11155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11155
old locus tag: CMV25_11155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010052224.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycoside hydrolase family 32 protein
translation: MTVNEWIKDNKAKVNNRYKPKFHFTAPIGWINDPNGFVYFKGEYHLFYQYHPYSAKWGPMHWGHAKSSDLIHWEHLPVALAPDQPYDKGGCFSGTALAVDDELILMYTGHVDENGNIRQVQCLARSFDGIHFQKYEQNPVIDERHVTNTTDFRDPKIFKRSDKYYSLVASTENNIGNVLLFESDDLENWMFKSVFLSAEKNQGKIWECPDLFSLGGKDVLIVSPIAYQQDGFRFANVNSSVWFIGEVDWEKGKFVTETVEEIDSGLDFYAPQTLLDDKNRRIMIAWQQMWGRNIPTDDLGHNWAGAMTIPRQLTYKDGKIQQEFVSEFYDQFQLVDKKEVEHDFETVFSPLLEVDFKGDFTLKVGTADEYVAISYADQIITVDRSQSGYQIKDGETATEVRQCRLTSDHVKISLATDVSTSELIINNDIVFSNTFYPKKEEIGKVHIQSEQFIVSTYREKIKI
SIO_010081: CMV25_RS11155
subclass of: SO_0000673
so part of: CMV25_RS11155
location: join(25870..27065,1..196)
location: region:1-27065:1
so has part: feature:25870-27065:1:exon
so has part: feature:1-196:1:exon

WP_096040595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25870-27065:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-196:1:exon

CMV25_RS11160
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11160
old locus tag: CMV25_11160
so part of: sequence
location: 230..1186
location: region:230-1186:1
so has part: feature:230-1186:1:exon
subclass of: SO_0000010

47269187
type: Gene
SIO_000068: ncbigene

position:230:1
position: 230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1186:1
position: 1186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:230-1186:1:exon

CMV25_RS11160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11160
old locus tag: CMV25_11160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016174521.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LacI family DNA-binding transcriptional regulator
translation: MKDVANLAGVGVGTVSRFINGTKVKDSTYQKVSEAIKTLDFIPDETARGLKSSMTNTVALILPTIWHPFFSEFAYHVEKFLSQNKYKLYLCNSDGQSEKEIEYVKMVDQNRCDGIIAITYTDIENCISDGLPFVSIDRFFTHDVAYVASDNRKIGQLAYEALAQSGGRHFAYIGSHNEIKNRTMDRGESFEEAVTKANAPFSKLDMLEPVYNNNEQIKAFLKANPDIDAIFAINDYEALDVLSALNELGKNVPEDVQIIGCDGMKMSVERDYIVSTIKQPIEAMAKCAVEMVLALAAGKEICKEQLLDVSYIKGRTTR
SIO_010081: CMV25_RS11160
subclass of: SO_0000673
so part of: CMV25_RS11160
location: 230..1186
location: region:230-1186:1
so has part: feature:230-1186:1:exon

WP_096040596.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:230-1186:1:exon

CMV25_RS11165
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11165
old locus tag: CMV25_11165
so part of: sequence
location: 1319..2200
location: region:1319-2200:1
so has part: feature:1319-2200:1:exon
subclass of: SO_0000010

47269188
type: Gene
SIO_000068: ncbigene

position:1319:1
position: 1319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2200:1
position: 2200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1319-2200:1:exon

CMV25_RS11165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11165
old locus tag: CMV25_11165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010018019.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ROK family protein
translation: MLLGSIEAGGTKFVCSVGTEQFEVKHSSTFPTTTPQKTLKQAIDFFKSFDVVAIGIGSFGPIDIIRESKTYGYVMSTPKPYWSDVDMIGLLKKELNVPMYFTTDVNASAYGELIANENQGSQSLVYFTIGTGIGAAAIQQGQFIGGISHAEMGHQFVKRHPKDLEFKGICPFHGDCLEGVASGPSLKARTGISGENISLDLEVWDIQAYYIAQAAISATLTLAPSKIIFGGGVMAQEHMIARVRTHFKALLNDYVMTPPLEDYLQLTSIADNGSATLGNFALALKELRYKGHL
SIO_010081: CMV25_RS11165
subclass of: SO_0000673
so part of: CMV25_RS11165
location: 1319..2200
location: region:1319-2200:1
so has part: feature:1319-2200:1:exon

WP_096040581.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1319-2200:1:exon

CMV25_RS11170
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11170
old locus tag: CMV25_11170
pseudo: true
so part of: sequence
location: complement(<2397..>2621)
location: region:2397-2621:-1
so has part: feature:2397-2621:-1:exon
subclass of: SO_0000010

47269189
type: Gene
SIO_000068: ncbigene

position:2397:-1
position: 2397
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:2621:-1
position: 2621
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2397-2621:-1:exon

CMV25_RS11170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11170
old locus tag: CMV25_11170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_086558031.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: CMV25_RS11170
subclass of: SO_0000673
so part of: CMV25_RS11170
location: complement(<2397..>2621)
location: region:2397-2621:-1
so has part: feature:2397-2621:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2397-2621:-1:exon

CMV25_RS11175
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11175
old locus tag: CMV25_11175
pseudo: true
so part of: sequence
location: complement(<2621..2788)
location: region:2621-2788:-1
so has part: feature:2621-2788:-1:exon
subclass of: SO_0000010

47269190
type: Gene
SIO_000068: ncbigene

position:2788:-1
position: 2788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2621-2788:-1:exon

CMV25_RS11175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11175
old locus tag: CMV25_11175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011834662.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS982 family transposase
SIO_010081: CMV25_RS11175
subclass of: SO_0000673
so part of: CMV25_RS11175
location: complement(<2621..2788)
location: region:2621-2788:-1
so has part: feature:2621-2788:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2621-2788:-1:exon

CMV25_RS11180
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11180
old locus tag: CMV25_11180
so part of: sequence
location: 2940..5927
location: region:2940-5927:1
so has part: feature:2940-5927:1:exon
subclass of: SO_0000010

47269191
type: Gene
SIO_000068: ncbigene

position:2940:1
position: 2940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5927:1
position: 5927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2940-5927:1:exon

CMV25_RS11180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11180
old locus tag: CMV25_11180
EC number: 3.1.21.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015426184.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I restriction endonuclease subunit R
translation: MAEAKFEAALIKKLEAEGWTYRKDLSYVSIKVLEGHWREVLNENNAYKLNGKPLSDVEFGLVMQEVQRIKTPYDAQLLLVGAGGVGSIPITRDDGSNLEVEIFYEDDVAGGRSRYEVVSQVIFDELPHGLASKRIIDLALLINGIPVAHIEEKDEHLQNQWGAFEQLKGYHGEGLYEGLFAFVQVQFILSQHSANYFARPNRLENYNKTFVFGWRDEQQKDITDAFVFAHQVLGIPALHRLVTVNMIPDASNSNLMVMRSYQIQATRAILQRMKEMEHNDYIQKEGGYIWHTTGSGKTVTSFKVAQLLAAAPKVKNVLFIVDRVDLVDQTLENFKDFAYIQFENRIKKVNGRELKRELSHKGASQILLISVQGLTKAVKNGLKNTDRNVIIMDEAHRSANGESVQLIKSAFQKTTWFGFTGTPNFYSDEINDVQTTRDISTHDIFGKRLHTYTIKDAIGDGNVLGFDITYFNPTIEIESLDEKHSEKDYEKEVYQSHVYREQVVQDILNHWDKTSSGALSAGKREKNVFQAMLAVSGKQAVVHYYNLFKEKAPHLRVAMTFSRDESNQPGTKEQNEALKKAIKEYSSCFNVPSLLNAQEPARAYMIDITKRLARKKPYNQGKDEDRLDLVIVSDQLLTGFDSKYINTIYMDKQLREGMLIQAMSRTNRTFHLNSKPHGKVRFYRQGEQMKSFVENALRIYTRGGNDTLQEADEDSKKEDIQSLEDEHILAEPQSHQIQKLTPAVQELKAFAGEDFSQIPRGEKDLKQFVRLGLETQNKIQQLVQQGYELGNEIDLLDAQGESTGEKVRLDISSFEEFGALQARLNDAREKLPEEERPDLTEIRVGLSLYDHEIIDYDWLVDLLNLFMDQKTPENKASIEKHILPLDEMSQQEIKDIIVDIESGEIKEHFTKATLDDQRKHKRSDQQELKIRRWAANQKVNGNRIVQAFDLFLPGHSLVDNSQLSALVSEIEAEENLSFFGASEFETALMSFFNSL
SIO_010081: CMV25_RS11180
subclass of: SO_0000673
so part of: CMV25_RS11180
location: 2940..5927
location: region:2940-5927:1
so has part: feature:2940-5927:1:exon

WP_096040582.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2940-5927:1:exon

CMV25_RS11185
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11185
old locus tag: CMV25_11185
so part of: sequence
location: 5967..7514
location: region:5967-7514:1
so has part: feature:5967-7514:1:exon
subclass of: SO_0000010

47269192
type: Gene
SIO_000068: ncbigene

position:5967:1
position: 5967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7514:1
position: 7514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5967-7514:1:exon

CMV25_RS11185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11185
old locus tag: CMV25_11185
EC number: 2.1.1.72
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015082072.1
GO function: GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I restriction-modification system subunit M
translation: MALSNEQKNKMWALLNQTRGQIGLTAYKDYIFGLLFYKYLSEKATQWLGEVLRGDTWENVYGQDPVRALDYMKQKLGYAIQPKEFFKDWEAAIHEERFNIPMISDTFGHFNQQIAFEAKDDFEGIFDGMRFDSSDLGSNAQARASVMISMIELLSAPEFDLSTGGDTVSDIYEYLLEKFATVLASDMGQYYTPKEISEVMARILTFGKADEDNFSIYDPAVGSASLLITTASHMKHSSQRGAIKYFGQEKDATPYRLARMNLMMHNIEYNDIQIHHADTLESDWPDGVIEGKDTPRMFDAVMANPPYSAHWNNKDREDDPRFREYGIAPKTKADYSFLLHCLYHTKESGRVAIILPHGVLFRGAAEGRIRKALIDKHQIEAVIGFPDKLFLNTGIPVCVLILKKNRANSDILFVDASQGFEKMKNQKQLRPEDIDKITETVIHRKAVDKYSHLATLEEVIENDYNLNIPRYVDTFEEEEPIDLADIQGQIDEVDAEIAKANQTLANYFKELGVLK
SIO_010081: CMV25_RS11185
subclass of: SO_0000673
so part of: CMV25_RS11185
location: 5967..7514
location: region:5967-7514:1
so has part: feature:5967-7514:1:exon

WP_096040583.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5967-7514:1:exon

CMV25_RS11190
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11190
old locus tag: CMV25_11190
so part of: sequence
location: 7511..8749
location: region:7511-8749:1
so has part: feature:7511-8749:1:exon
subclass of: SO_0000010

47269193
type: Gene
SIO_000068: ncbigene

position:7511:1
position: 7511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8749:1
position: 8749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7511-8749:1:exon

CMV25_RS11190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11190
old locus tag: CMV25_11190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002323630.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease subunit S
translation: MKEKVQAPELRFDGFTDDWEERKLGEFSDVRDGTHASPKYVSQGHPMVTSKNLTHSGLDMTDVSFLTDKDFNEINKRSKVSIGDILFGMIGTIGNPVIVDRDDFAIKNVALIKEKTSNPITNKWLLQYLKSPSFNRFIQKENAGGTQKFIALGLIRDMKLRVPEFDEQQKIGAFFKKIDDTIALHQRKLDLLKEQKKGYLQKMFPKNGAKVPELRFAGFADDWEERKLGEVGKAKSGIGFPDAQQGGKQGTPFYKVSDMNNPGNEVVMMSANNYASDSQLRENKWNPINPQNSGVVFAKVGAAIFLDRKRIVDTSFLIDNNMMSYLFDSSWNRYFGKTLFEKLRLSRFAQVGALPSFNGSDVEDIKVMIPEESEQKVIGDMFEKLDDTIALHQRKLDLLKEQKKGFLQKMFV
SIO_010081: CMV25_RS11190
subclass of: SO_0000673
so part of: CMV25_RS11190
location: 7511..8749
location: region:7511-8749:1
so has part: feature:7511-8749:1:exon

WP_096040584.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7511-8749:1:exon

CMV25_RS11195
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11195
old locus tag: CMV25_11195
so part of: sequence
location: 8763..9608
location: region:8763-9608:1
so has part: feature:8763-9608:1:exon
subclass of: SO_0000010

47269194
type: Gene
SIO_000068: ncbigene

position:8763:1
position: 8763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9608:1
position: 9608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8763-9608:1:exon

CMV25_RS11195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11195
old locus tag: CMV25_11195
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0004518 - nuclease activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: GIY-YIG nuclease family protein
translation: MIKLNDILTIDDFSDFRIRFVLSWGNETEQNPLERYRNDPDDPMRHYLWKGNKATGFKVGTKVIGLIRLAGDNWLLTHVLEINAVNDVPIGAALPTIDEQINYWYNAEPMEKFTKFFGRVIVNFHNTSQNLIRLPEVVIDEMEVVEILSNNFSDRDFPGYANVTINWSQLHQIISRNNREWRTALQNQKGIYLITDTHSGKQYVGSAYGEAMIWGRWQAYVLTGHGGNEALKNLSFEYIKQHFQYSILEIADGKSSDKYIFEREIWWKQALLTRTFGYNMN
SIO_010081: CMV25_RS11195
subclass of: SO_0000673
so part of: CMV25_RS11195
location: 8763..9608
location: region:8763-9608:1
so has part: feature:8763-9608:1:exon

WP_096040585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8763-9608:1:exon

CMV25_RS11440
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11440
pseudo: true
so part of: sequence
location: <9763..9828
location: region:9763-9828:1
so has part: feature:9763-9828:1:exon
subclass of: SO_0000010

47269240
type: Gene
SIO_000068: ncbigene

position:9763:1
position: 9763
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:9828:1
position: 9828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9763-9828:1:exon

CMV25_RS11440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014125701.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: CMV25_RS11440
subclass of: SO_0000673
so part of: CMV25_RS11440
location: <9763..9828
location: region:9763-9828:1
so has part: feature:9763-9828:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9763-9828:1:exon

CMV25_RS11200
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11200
old locus tag: CMV25_11200
so part of: sequence
location: 10605..11024
location: region:10605-11024:1
so has part: feature:10605-11024:1:exon
subclass of: SO_0000010

47269195
type: Gene
SIO_000068: ncbigene

position:10605:1
position: 10605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11024:1
position: 11024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10605-11024:1:exon

CMV25_RS11200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11200
old locus tag: CMV25_11200
inference: COORDINATES: protein motif:HMM:NF012920.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S24 family peptidase
translation: MIPYQVISEQSLSAGYGNGYTDEQETYTVYWDKDVRYDYAAEIEGNSMEPKFHSGDIALIRKTHVNDYDGCVCVIDDIANQRVYIKKIHIEDTHVRLESLNKDTYDNGELIYPDILLENTENLRLIGKVIDSFKPIEIK
SIO_010081: CMV25_RS11200
subclass of: SO_0000673
so part of: CMV25_RS11200
location: 10605..11024
location: region:10605-11024:1
so has part: feature:10605-11024:1:exon

WP_072353702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10605-11024:1:exon

CMV25_RS11205
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11205
old locus tag: CMV25_11205
so part of: sequence
location: 11366..12649
location: region:11366-12649:1
so has part: feature:11366-12649:1:exon
subclass of: SO_0000010

47269196
type: Gene
SIO_000068: ncbigene

position:11366:1
position: 11366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12649:1
position: 12649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11366-12649:1:exon

CMV25_RS11205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11205
old locus tag: CMV25_11205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011669134.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MDELKKRKVVEHNDLITSIAKMDKTPLKIFELAVSCIDTDNPPKDNIIYLSKTELFAFFEVSDNDKHSRFKQAIEKMQKQAFFEIKEEKDKGYKFKSIVPIPFVEWTDYNDKVTIQFQPQIMPYLIDLKKNFTQYALSDVMELNSKYSIILYKWLSMYYNQYEHYKAKGGRREEQLEQYSNPSISIKELRLLTDTVNSRKQFTRFNNDILKRPLEEINAHTHFFVTYDKIKKGRTIDNIQFHITKKGQPQELNGEYKIREQDSAYLQGKADKEVNQQALFAEAMQSLYTTSLLESSLLSPFDMQDITLMANLQQEVYPLYKQLEEIVGIQGIRKHLEYVSNKKLDYSKPNLVKYLKTAVMRYLESGDTKQPEEDKTRYLKTKGNVKAVNGNKIPDHRYKSAYVNETTPEEQKELERIKKQLSDSMKK
SIO_010081: CMV25_RS11205
subclass of: SO_0000673
so part of: CMV25_RS11205
location: 11366..12649
location: region:11366-12649:1
so has part: feature:11366-12649:1:exon

WP_096040586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11366-12649:1:exon

CMV25_RS11210
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11210
old locus tag: CMV25_11210
so part of: sequence
location: 12767..13609
location: region:12767-13609:1
so has part: feature:12767-13609:1:exon
subclass of: SO_0000010

47269197
type: Gene
SIO_000068: ncbigene

position:12767:1
position: 12767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13609:1
position: 13609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12767-13609:1:exon

CMV25_RS11210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11210
old locus tag: CMV25_11210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011669088.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MNKTLWSLSKYHEGVVNKIKSLPVAIVLTLNNFKGGVGKSTLIAIFAYIMVQLKIKVLLIDSDPQRTLTKKMMKNFEVKKNASLSFMQGIRNNSLENCITQLDDYLYIIQGDWELATLDKFARTNLNQNNEYYLYSYLIEDLKKDFDLIIFDSVPTTSLYTHNCIVASDYVVAPTQAEEESYENTISYLNYLNDMRQYNDKVEILGIVPYLTKDDNATNKSYLKKYYDTFGDLTFESIIKYSARVMSWGTNGISENKGYDKQVLSMYFDVFREFLDRLDK
SIO_010081: CMV25_RS11210
subclass of: SO_0000673
so part of: CMV25_RS11210
location: 12767..13609
location: region:12767-13609:1
so has part: feature:12767-13609:1:exon

WP_072353682.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12767-13609:1:exon

CMV25_RS11215
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11215
old locus tag: CMV25_11215
so part of: sequence
location: 13714..13926
location: region:13714-13926:1
so has part: feature:13714-13926:1:exon
subclass of: SO_0000010

47269198
type: Gene
SIO_000068: ncbigene

position:13714:1
position: 13714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13926:1
position: 13926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13714-13926:1:exon

CMV25_RS11215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11215
old locus tag: CMV25_11215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001284805.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGLDDFIKKTGKIETPFEKKENIKKTTKLVKIDEDLHKELKIYSALNGTNIKDNTEQAIREFLEKYKGHL
SIO_010081: CMV25_RS11215
subclass of: SO_0000673
so part of: CMV25_RS11215
location: 13714..13926
location: region:13714-13926:1
so has part: feature:13714-13926:1:exon

WP_096040587.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13714-13926:1:exon

CMV25_RS11220
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11220
old locus tag: CMV25_11220
so part of: sequence
location: complement(14104..14784)
location: region:14104-14784:-1
so has part: feature:14104-14784:-1:exon
subclass of: SO_0000010

47269199
type: Gene
SIO_000068: ncbigene

position:14104:-1
position: 14104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14784:-1
position: 14784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14104-14784:-1:exon

CMV25_RS11220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11220
old locus tag: CMV25_11220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012477736.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element ISS1N family transposase
translation: MNHFKGKQFKKDVIIVAVGYYLRYNLSYREVQELLYDRGINVCHTTIYRWVQEYSKVLYYLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLHKQFGEPKAIVTDKALSLGSAFRKLQSVGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYQSLRTASSTIKGMESIRGIYKKNRRNGTLFGFSVSTEIKVLMGITA
SIO_010081: CMV25_RS11220
subclass of: SO_0000673
so part of: CMV25_RS11220
location: complement(14104..14784)
location: region:14104-14784:-1
so has part: feature:14104-14784:-1:exon

WP_096040588.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14104-14784:-1:exon

CMV25_RS11230
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11230
old locus tag: CMV25_11230
so part of: sequence
location: complement(15017..16192)
location: region:15017-16192:-1
so has part: feature:15017-16192:-1:exon
subclass of: SO_0000010

47269200
type: Gene
SIO_000068: ncbigene

position:15017:-1
position: 15017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16192:-1
position: 16192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15017-16192:-1:exon

CMV25_RS11230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11230
old locus tag: CMV25_11230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014093787.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dipeptidyl aminopeptidase
translation: MKNHFFKTFEFEFETTRLLWYTPSGGSDYGEVATTAEKIKDGNYESWYKGWSDFAKKLEERSDNFKSQSSKANGYLRASRYYQAAEFFLSANDSRKIEAYQKSVKLFYKSLDLQKVKYVSEMINYKNAKIRTLLFRTDMESKGTLFICGGFDALLEELYFTNVKSGMENGYDVVLYEGPGQSDVIRRYNLPFEENWHIVARQVVDFYNEKYQISGEKIGIGLSLGGLLVSRAASLDQTLFDKIVLYNYFPSMLDSFKKSMPKFLYKYIEDGFSKPFEKICSFYISKNKFLNWQIEHAKWTFGENSLNNLLKKCSKFNEGISLEKLNTDTLVLLAENENYYDFRLGLNFYENIPAINKKLILFNKTNFSSDLHCQNGATHDSNDQIFEWLDL
SIO_010081: CMV25_RS11230
subclass of: SO_0000673
so part of: CMV25_RS11230
location: complement(15017..16192)
location: region:15017-16192:-1
so has part: feature:15017-16192:-1:exon

WP_096040589.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15017-16192:-1:exon

CMV25_RS11235
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11235
old locus tag: CMV25_11235
so part of: sequence
location: 16266..16610
location: region:16266-16610:1
so has part: feature:16266-16610:1:exon
subclass of: SO_0000010

47269201
type: Gene
SIO_000068: ncbigene

position:16266:1
position: 16266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16610:1
position: 16610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16266-16610:1:exon

CMV25_RS11235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11235
old locus tag: CMV25_11235
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014093788.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MQNKADDLRLRELAMPLLGKWVPFILILLAEKTRHFAELEREMKVVSRKVLNENLNNLLAYGIISKEGESSTGFPVYYSLTDLGKSSLFILENVKTWLKEHEDEITSNQNQFKN
SIO_010081: CMV25_RS11235
subclass of: SO_0000673
so part of: CMV25_RS11235
location: 16266..16610
location: region:16266-16610:1
so has part: feature:16266-16610:1:exon

WP_244166008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16266-16610:1:exon

CMV25_RS11605
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11605
old locus tag: CMV25_11240
so part of: sequence
location: complement(16825..17703)
location: region:16825-17703:-1
so has part: feature:16825-17703:-1:exon
subclass of: SO_0000010

47269202
type: Gene
SIO_000068: ncbigene

position:16825:-1
position: 16825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17703:-1
position: 17703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16825-17703:-1:exon

CMV25_RS11605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11605
old locus tag: CMV25_11240
inference: COORDINATES: protein motif:HMM:NF033516.0
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MSTRAKYQVVDSLTGQYAITALCHYLGISRSGYYSWIKKNRPLTKSWNSQLAEKIQLLFDASFKGYRYIWMQLKRLYGISVNPKTVLRYMQVLGLKSPIRKKRFTSCTRQEMNKKARKVSPNLLARHFVATRPHEKLVTDVSYVYHKQGRLYLSIIKDLYDNSILAYNLSKFNDNQLVFENLDLVFRKDWDKSKSCLLHSDQGFQYTNKQYHKKLETFNVTVSHSRKGNCYDNACCENFFSHLKSESLELFVPENETELMQQIDDFITWYNFDRPQLKLKGMTPIEYRQTYL
SIO_010081: CMV25_RS11605
subclass of: SO_0000673
so part of: CMV25_RS11605
location: complement(16825..17703)
location: region:16825-17703:-1
so has part: feature:16825-17703:-1:exon

WP_167842509.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16825-17703:-1:exon

CMV25_RS11245
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11245
old locus tag: CMV25_11245
so part of: sequence
location: complement(17706..17993)
location: region:17706-17993:-1
so has part: feature:17706-17993:-1:exon
subclass of: SO_0000010

47269203
type: Gene
SIO_000068: ncbigene

position:17706:-1
position: 17706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17993:-1
position: 17993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17706-17993:-1:exon

CMV25_RS11245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11245
old locus tag: CMV25_11245
inference: COORDINATES: protein motif:HMM:NF024908.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MRKNQNYTGDFKVKVAQAYLFDHLGGYQSVAEHFGVTNRSQVQHWVKLYENNPQLLYQDNRGRPAQVKSETMTLEEQVNYLKMEVAILKKLRKLL
SIO_010081: CMV25_RS11245
subclass of: SO_0000673
so part of: CMV25_RS11245
location: complement(17706..17993)
location: region:17706-17993:-1
so has part: feature:17706-17993:-1:exon

WP_014571824.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17706-17993:-1:exon

CMV25_RS11250
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11250
old locus tag: CMV25_11250
pseudo: true
so part of: sequence
location: complement(18127..>18435)
location: region:18127-18435:-1
so has part: feature:18127-18435:-1:exon
subclass of: SO_0000010

47269204
type: Gene
SIO_000068: ncbigene

position:18127:-1
position: 18127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18435:-1
position: 18435
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18127-18435:-1:exon

CMV25_RS11250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11250
old locus tag: CMV25_11250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_086558031.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: CMV25_RS11250
subclass of: SO_0000673
so part of: CMV25_RS11250
location: complement(18127..>18435)
location: region:18127-18435:-1
so has part: feature:18127-18435:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18127-18435:-1:exon

CMV25_RS11255
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11255
old locus tag: CMV25_11255
so part of: sequence
location: 18651..19406
location: region:18651-19406:1
so has part: feature:18651-19406:1:exon
subclass of: SO_0000010

47269205
type: Gene
SIO_000068: ncbigene

position:18651:1
position: 18651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19406:1
position: 19406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18651-19406:1:exon

CMV25_RS11255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11255
old locus tag: CMV25_11255
EC number: 2.1.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002962809.1
GO function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent methyltransferase
translation: MADKEIGHNFLARIGKKRLRPGGVNATRWLIDKGAFSEQTRVLEVACNMCTTSIELAKKFNCNIVGIDLDTKALEKAKINIRKANLENRIEVIQGNALKLPFADNTFDIVINEAMLTMLSPKAKKKAISEYYRVLKPGGKLLTHDVAYLNPQLEQIILELRKTININVSPLSVADWESVFKQSGFSSVESTNGEMTLMSLKGMIKDEGLLNTLNIIKNGHKRENKEMFQNMHTFFTKTGKELKYIAVCSQK
SIO_010081: CMV25_RS11255
subclass of: SO_0000673
so part of: CMV25_RS11255
location: 18651..19406
location: region:18651-19406:1
so has part: feature:18651-19406:1:exon

WP_096040590.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18651-19406:1:exon

CMV25_RS11260
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11260
old locus tag: CMV25_11260
so part of: sequence
location: 19421..19756
location: region:19421-19756:1
so has part: feature:19421-19756:1:exon
subclass of: SO_0000010

47269206
type: Gene
SIO_000068: ncbigene

position:19421:1
position: 19421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19756:1
position: 19756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19421-19756:1:exon

CMV25_RS11260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11260
old locus tag: CMV25_11260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002265614.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cupin domain-containing protein
translation: MYINKIESQKVFELKNEINFESDAVASKTLVQYKNTGITLFSLDKDESISEHTSPGDALVTILEGDAEISINGEIFSLVCGQSIIMPADVPHALKAITSFKMLLVVIKEEK
SIO_010081: CMV25_RS11260
subclass of: SO_0000673
so part of: CMV25_RS11260
location: 19421..19756
location: region:19421-19756:1
so has part: feature:19421-19756:1:exon

WP_047916006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19421-19756:1:exon

CMV25_RS11265
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11265
old locus tag: CMV25_11265
pseudo: true
so part of: sequence
location: complement(<20067..20343)
location: region:20067-20343:-1
so has part: feature:20067-20343:-1:exon
subclass of: SO_0000010

47269207
type: Gene
SIO_000068: ncbigene

position:20067:-1
position: 20067
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:20343:-1
position: 20343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20067-20343:-1:exon

CMV25_RS11265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11265
old locus tag: CMV25_11265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002295591.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: CMV25_RS11265
subclass of: SO_0000673
so part of: CMV25_RS11265
location: complement(<20067..20343)
location: region:20067-20343:-1
so has part: feature:20067-20343:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20067-20343:-1:exon

CMV25_RS11270
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11270
old locus tag: CMV25_11270
so part of: sequence
location: complement(20478..20753)
location: region:20478-20753:-1
so has part: feature:20478-20753:-1:exon
subclass of: SO_0000010

47269208
type: Gene
SIO_000068: ncbigene

position:20478:-1
position: 20478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20753:-1
position: 20753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20478-20753:-1:exon

CMV25_RS11270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11270
old locus tag: CMV25_11270
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKEVKDIRYNVRMTKQTFDIVDSFEGNSFTSKFETLVEHSYIEKMRIDTEIHESQIKLDELKKEISEMRDIKNKLNQIERYIDSAIYSSQ
SIO_010081: CMV25_RS11270
subclass of: SO_0000673
so part of: CMV25_RS11270
location: complement(20478..20753)
location: region:20478-20753:-1
so has part: feature:20478-20753:-1:exon

WP_096040591.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20478-20753:-1:exon

CMV25_RS11760
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11760
so part of: sequence
location: complement(20874..21005)
location: region:20874-21005:-1
so has part: feature:20874-21005:-1:exon
subclass of: SO_0000010

80258207
type: Gene
SIO_000068: ncbigene

position:20874:-1
position: 20874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21005:-1
position: 21005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20874-21005:-1:exon

CMV25_RS11760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11760
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVVIRGALDKVDDGYQVLLDSSKLFMIFKNDESWLLKTRQLIR
SIO_010081: CMV25_RS11760
subclass of: SO_0000673
so part of: CMV25_RS11760
location: complement(20874..21005)
location: region:20874-21005:-1
so has part: feature:20874-21005:-1:exon

WP_279627283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20874-21005:-1:exon

CMV25_RS11275
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11275
old locus tag: CMV25_11275
so part of: sequence
location: 21254..21631
location: region:21254-21631:1
so has part: feature:21254-21631:1:exon
subclass of: SO_0000010

47269209
type: Gene
SIO_000068: ncbigene

position:21254:1
position: 21254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21631:1
position: 21631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21254-21631:1:exon

CMV25_RS11275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11275
old locus tag: CMV25_11275
inference: COORDINATES: protein motif:HMM:NF024754.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3'-5' exonuclease
translation: MNIFVDLFWKEYNLIDGFKVAIEKFQGENTIPIMMIHKSKGLEYEAVYFVGLEDSAFWNFKNQPEADRSAFFVAISRAKRYMSFSYCEKRSSLVNYYNPSGDQKNDNINEFFDLLLQPGVATIVS
SIO_010081: CMV25_RS11275
subclass of: SO_0000673
so part of: CMV25_RS11275
location: 21254..21631
location: region:21254-21631:1
so has part: feature:21254-21631:1:exon

WP_244166009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21254-21631:1:exon

CMV25_RS11280
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11280
old locus tag: CMV25_11280
so part of: sequence
location: 22392..23306
location: region:22392-23306:1
so has part: feature:22392-23306:1:exon
subclass of: SO_0000010

47269210
type: Gene
SIO_000068: ncbigene

position:22392:1
position: 22392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23306:1
position: 23306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22392-23306:1:exon

CMV25_RS11280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11280
old locus tag: CMV25_11280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010052215.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease subunit
translation: MKQKMAENIRYIKSNYLLYLLVAPAVILTVIFKYVPIYGLLIAFKDYNPLNGIMGSEWVGLEHFTRFISSPNFSILLINTLKLSVYGLLLGFFPPIILALSFNLLASDKLKKRLQLILYAPNFISVVVIAGMLFLFFANKGPINNIFESLTGKTLPFLTGPKYFRPLYIFSGIWQGIGWSSILYTATLANVPPELIEASEIDGANILQRIWHIDLPALKPVMTISFILAAGGIMSIGYEKAYLLQTTMNLPSSEIIATYVYKVGLQSGDYSYSTAVGLFNSVINLILLVSVNQIIKKMNDGEGL
SIO_010081: CMV25_RS11280
subclass of: SO_0000673
so part of: CMV25_RS11280
location: 22392..23306
location: region:22392-23306:1
so has part: feature:22392-23306:1:exon

WP_096040592.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22392-23306:1:exon

CMV25_RS11285
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11285
old locus tag: CMV25_11285
so part of: sequence
location: 23309..24193
location: region:23309-24193:1
so has part: feature:23309-24193:1:exon
subclass of: SO_0000010

47269211
type: Gene
SIO_000068: ncbigene

position:23309:1
position: 23309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24193:1
position: 24193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23309-24193:1:exon

CMV25_RS11285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11285
old locus tag: CMV25_11285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005605877.1
GO process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbohydrate ABC transporter permease
translation: MKKHYTVFDKRILTLNKILLFLLIIITVVPLLYVLAASFQSPDSLMSKGISFNIKDWTLSGYKKVLGNDSILRGFVNSMIYSFGYAFFSTAVTMFCAYPLSKPNFVGRKLITYLFIVTMFFGGGLVPTYMVVKNLGMLDTAWSIIIPGAINVWNIILARTYFQSLPDELEEAALIDGANQIQIFFKILLPLAKPIMFVLFLYSFVGQWNGYFDAMIYIKDTDLQPLQLVLRNILIQNQIDTNMVGSQAAMAEMEKVAQLIKYATIIISSLPLIVMYPFFQKYFDKGVMAGSLKG
SIO_010081: CMV25_RS11285
subclass of: SO_0000673
so part of: CMV25_RS11285
location: 23309..24193
location: region:23309-24193:1
so has part: feature:23309-24193:1:exon

WP_096040593.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23309-24193:1:exon

CMV25_RS11290
type: Gene
subclass of: SO_0000704
RO_0002162: 1366
locus tag: CMV25_RS11290
old locus tag: CMV25_11290
so part of: sequence
location: 24254..25864
location: region:24254-25864:1
so has part: feature:24254-25864:1:exon
subclass of: SO_0000010

47269212
type: Gene
SIO_000068: ncbigene

position:24254:1
position: 24254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25864:1
position: 25864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24254-25864:1:exon

CMV25_RS11290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1366
locus tag: CMV25_RS11290
old locus tag: CMV25_11290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018165022.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter substrate-binding protein
translation: MKKLLTAGVILLAATTLVGCGSKSKKETASKDYKLTNVTFPLKEKVSLNLLTTQNQVAPKDPNDMTIFKRLEKDSNVHINWTNYPNDFVEKRNLDIASGALPDAIFNAQASEQDLLTWAKNGVIVPLEDAIDDYMPNLKKVFEASPKYKKMLTAPDGHIYSLPWIEELGEGKESIHTVNSLGWINEKWLKALGLEHPKTAKDLYNVLKAFKEKDPNGNGKKDEIPLSFISNDDGNDLKMLFAAFGDGSGDNAQHMIVDNDGKIKFTANTDAYKEAIKYFNKCYTEGLIDTESFEQEWSRYVAKGADEKYGLYFTWDPHNVTGPGDDYVMFRPLAREDGQVNVTRTNNFGFSRDRFVITSANKNLELTAKWIDQMYEPLQSVQNNWGTYGDKGQNIFKLNEAEHKLVHEPLEGTAPVELRQKTSVGGPLAILNSYYGQYTTMPDDAKWRLDLMAEYIFPHVNNNYNYPNIFFSQEDTKKIADIEADMMGYITQKRDEWITKGNIDEEWDDYLKQLKAYGLDEWLKIKQENFDNYNKG
SIO_010081: CMV25_RS11290
subclass of: SO_0000673
so part of: CMV25_RS11290
location: 24254..25864
location: region:24254-25864:1
so has part: feature:24254-25864:1:exon

WP_096040594.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24254-25864:1:exon