Borrelia anserina Es isolate UTHSCSA plasmid lpJ, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
Genome of the avian spirochetosis agent Borrelia anserina Es
Submitted (29-FEB-2016) Microbiology and Molecular Genetics, University of California Irvine, 3012 Hewitt, Irvine, CA 92697-4028, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP014605.1.\nThe sequence is near-identical to a 11092 bp contig of B. anserina\nBA2 (CP005838); the first 7 kb of lpJ is highly similar to and\nsyntenic with the reverse complement of 16.5-23.5 kb region of the\n38 kb lp38 linear plasmid of B. burgdorferi B31.\nSequence similar to B. anserina BA2 plasmid Contig0012 (CP005840).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC Assembly Cell v. 8.5\nGenome Coverage :: 200X\nSequencing Technology :: Illumina; IonTorrent\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 03:03:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 984\nCDSs (total) :: 946\nGenes (coding) :: 937\nCDSs (with protein) :: 937\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 9\nCDSs (without protein) :: 9\nPseudo Genes (ambiguous residues) :: 0 of 9\nPseudo Genes (frameshifted) :: 5 of 9\nPseudo Genes (incomplete) :: 3 of 9\nPseudo Genes (internal stop) :: 1 of 9\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002662139.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010890360.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890369.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257267.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890368.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257261.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540855.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703889.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539540.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683246.1
COORDINATES: similar to AA sequence:RefSeq:WP_014687094.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_014540029.1