Borrelia anserina Es isolate UTHSCSA plasmid cp5, complete sequence.
type: Entry
definition: Borrelia anserina Es isolate UTHSCSA plasmid cp5, complete sequence.
sequence version: NZ_CP014521.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP014521.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04359737
keyword: RefSeq
source: Borrelia anserina Es
organism: Borrelia anserina Es
taxonomy: Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP014521.1.\nA small, probable circular plasmid that has sequence similarities\nto the lp17 group of linear plasmids of B. burgdorferi and other\nLyme disease group species.\nSequence similar to B. anserina BA2 plasmid Contig0012 (CP005840).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis HGAP v. 2.1; CLC Assembly\n Cell v. 8.5\nGenome Coverage :: 1000X\nSequencing Technology :: Illumina; IonTorrent; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 03:03:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 984\nCDSs (total) :: 946\nGenes (coding) :: 937\nCDSs (with protein) :: 937\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 9\nCDSs (without protein) :: 9\nPseudo Genes (ambiguous residues) :: 0 of 9\nPseudo Genes (frameshifted) :: 5 of 9\nPseudo Genes (incomplete) :: 3 of 9\nPseudo Genes (internal stop) :: 1 of 9\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 4978
topology: circular
so has quality: SO_0000988
location: 1..4978
location: region:1-4978:1
RO_0002162: 1365188

NZ_CP014521
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04359737
type: BioSample
SIO_000068: biosample

1
title: Genome of the avian spirochetosis agent Borrelia anserina Es
author: Elbir, H.
author: Sitlani, P.
author: Bergstroem, S.
author: Barbour, A.G.
journal: Unpublished

2
title: Direct Submission
author: Elbir, H.
author: Sitlani, P.
author: Bergstroem, S.
author: Barbour, A.G.
journal: Submitted (22-FEB-2016) Microbiology and Molecular Genetics, University of California Irvine, 3012 Hewitt, Irvine, CA 92697-4028, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4978:1
position: 4978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4978:1:source
so part of: sequence
organism: Borrelia anserina Es
mol type: genomic DNA
strain: Es
isolate: UTHSCSA
isolation source: chicken
host: Argas persicus
plasmid: cp5
country: USA: California
lat lon: 38.55 N 121.74 W
collection date: 1979
collected by: A.J. DaMassa

1365188
type: Taxonomy
SIO_000068: taxonomy

N187_RS04770
type: Gene
subclass of: SO_0000704
RO_0002162: 1365188
locus tag: N187_RS04770
old locus tag: N187_D01
so part of: sequence
location: 187..837
location: region:187-837:1
so has part: feature:187-837:1:exon
subclass of: SO_0000010

position:187:1
position: 187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:837:1
position: 837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187-837:1:exon

N187_RS04770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1365188
locus tag: N187_RS04770
old locus tag: N187_D01
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683069.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNIKEDNIQERKLPIILDYDSYITESNRETFFGNFQYEANYKAKVERFIVDFFKIPRSLKNKYEVNIDCLSNQDLPFGNIAMNCINTLKLIVDVINMQTGETYNYDEFIAKTATEKMLQYGSKVISALSRHFDESNGTNYNEGYYEWEKGWIDRKWIDYEPSDLEIKQMQAWNKRISQELSFRNRRRRISAMQMGQVRLLKAIEKLDHDSRKKNI
SIO_010081: N187_RS04770
subclass of: SO_0000673
so part of: N187_RS04770
location: 187..837
location: region:187-837:1
so has part: feature:187-837:1:exon

WP_075550368.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:187-837:1:exon

N187_RS04775
type: Gene
subclass of: SO_0000704
RO_0002162: 1365188
locus tag: N187_RS04775
so part of: sequence
location: complement(2077..2289)
location: region:2077-2289:-1
so has part: feature:2077-2289:-1:exon
subclass of: SO_0000010

position:2077:-1
position: 2077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2289:-1
position: 2289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2077-2289:-1:exon

N187_RS04775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1365188
locus tag: N187_RS04775
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKSSIKIKIRRKKHHRKKQERDKKRPIKVKITIEKKPRKRTKTLNSKNNKNYLINKSKNKKTRYIGMDL
SIO_010081: N187_RS04775
subclass of: SO_0000673
so part of: N187_RS04775
location: complement(2077..2289)
location: region:2077-2289:-1
so has part: feature:2077-2289:-1:exon

WP_025420096.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2077-2289:-1:exon

N187_RS04780
type: Gene
subclass of: SO_0000704
RO_0002162: 1365188
locus tag: N187_RS04780
old locus tag: N187_D03
so part of: sequence
location: complement(2339..2872)
location: region:2339-2872:-1
so has part: feature:2339-2872:-1:exon
subclass of: SO_0000010

position:2339:-1
position: 2339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2872:-1
position: 2872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2339-2872:-1:exon

N187_RS04780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1365188
locus tag: N187_RS04780
old locus tag: N187_D03
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539781.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid maintenance protein
translation: MKNLNFFLYNNSKLKKNQVRLIKLISILKYLNKNKLGYNQQDILNLANFFLKREGYSVIKMKTLQKDLGFLKKNNIIKTFIIRLGEYKGSKIKYIPKSNAYQILKKVLNSTEELLEKTFNIIYKLSKKEKIKNKTEGKNRTKNSSVYYIKYNNINNKGRTKTKEDKRQGKKEKIQVT
SIO_010081: N187_RS04780
subclass of: SO_0000673
so part of: N187_RS04780
location: complement(2339..2872)
location: region:2339-2872:-1
so has part: feature:2339-2872:-1:exon

WP_025420095.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2339-2872:-1:exon

N187_RS04785
type: Gene
subclass of: SO_0000704
RO_0002162: 1365188
locus tag: N187_RS04785
old locus tag: N187_D04
so part of: sequence
location: 3096..3323
location: region:3096-3323:1
so has part: feature:3096-3323:1:exon
subclass of: SO_0000010

position:3096:1
position: 3096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3323:1
position: 3323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3096-3323:1:exon

N187_RS04785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1365188
locus tag: N187_RS04785
old locus tag: N187_D04
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683070.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRITLNFLNSLKNLKEFSKEMGYSDSSYLSRYIKKNKIEGIISSKDLFFKKRELLLSEEAQKLIKCKLKKRMAEG
SIO_010081: N187_RS04785
subclass of: SO_0000673
so part of: N187_RS04785
location: 3096..3323
location: region:3096-3323:1
so has part: feature:3096-3323:1:exon

WP_025420094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3096-3323:1:exon

N187_RS04790
type: Gene
subclass of: SO_0000704
RO_0002162: 1365188
locus tag: N187_RS04790
old locus tag: N187_D05
so part of: sequence
location: 3330..3593
location: region:3330-3593:1
so has part: feature:3330-3593:1:exon
subclass of: SO_0000010

position:3330:1
position: 3330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3593:1
position: 3593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3330-3593:1:exon

N187_RS04790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1365188
locus tag: N187_RS04790
old locus tag: N187_D05
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014683071.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIDKKNLKNFFIEYEGKKYYTPLFLAKVNNISYFTIKNKIKKLNISVKAKDIGIVNSLSEELLVAEDNLDKLFYDKRFKCLDSRGIR
SIO_010081: N187_RS04790
subclass of: SO_0000673
so part of: N187_RS04790
location: 3330..3593
location: region:3330-3593:1
so has part: feature:3330-3593:1:exon

WP_025420093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3330-3593:1:exon

N187_RS04795
type: Gene
subclass of: SO_0000704
RO_0002162: 1365188
locus tag: N187_RS04795
old locus tag: N187_D06
so part of: sequence
location: 3590..4357
location: region:3590-4357:1
so has part: feature:3590-4357:1:exon
subclass of: SO_0000010

position:3590:1
position: 3590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4357:1
position: 4357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3590-4357:1:exon

N187_RS04795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1365188
locus tag: N187_RS04795
old locus tag: N187_D06
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539780.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MIDIIVISSIKGGVGKSVTAIMLGYIFSKRYKTLLIDIDSQASVTSYFLPYFENKVDIREYNIYEVLKSKKSFMSIVHEITADLHFAPSHIKLSQFSGENIIGQEYKLKTILTPYFDEYDYIIIDTPPSVNKELINSLMIATKVVIPLPAELWAIESYDILKSKMQEIINAYQKQDFKSYYIIQTLYEENRKIKKEFFYSLQQLYQEYIPIKIHRSAAIQKMITYRLEPQESERYYNEYLRVAEAIESIANIKTT
SIO_010081: N187_RS04795
subclass of: SO_0000673
so part of: N187_RS04795
location: 3590..4357
location: region:3590-4357:1
so has part: feature:3590-4357:1:exon

WP_025420092.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3590-4357:1:exon

N187_RS04800
type: Gene
subclass of: SO_0000704
RO_0002162: 1365188
locus tag: N187_RS04800
old locus tag: N187_D07
so part of: sequence
location: 4403..4918
location: region:4403-4918:1
so has part: feature:4403-4918:1:exon
subclass of: SO_0000010

position:4403:1
position: 4403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4918:1
position: 4918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4403-4918:1:exon

N187_RS04800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1365188
locus tag: N187_RS04800
old locus tag: N187_D07
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012539779.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome replication/partitioning protein
translation: MKVDIIDTIKSRVGDVVRVEDSSAKEKAQLRYRQLKEEIKARTLEEVVNKLELAKALYEIKKNKLYIFDGYDNFYEFCLDYKFSRTMIYRYIKIGAYLEKENVSEQDIMQSSLNKIINDIRVKKNSSECKPVIIRFNLEDKEKQLMLIKNKQKLEKFLLKCLLDNWESFMV
SIO_010081: N187_RS04800
subclass of: SO_0000673
so part of: N187_RS04800
location: 4403..4918
location: region:4403-4918:1
so has part: feature:4403-4918:1:exon

WP_075550369.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4403-4918:1:exon