Borrelia anserina Es isolate UTHSCSA plasmid lpA89, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
lpA89 plasmid of the avian spirochetosis agent Borrelia anserina Es
Submitted (11-FEB-2016) Microbiology and Molecular Genetics, University of California Irvine, 3012 Hewitt, Irvine, CA 92697-4028, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP014325.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC Assembly Cell v. v. 4.4; SMRT Analysis\n v. HGAP v. 2015\nGenome Coverage :: 900X\nSequencing Technology :: IonTorrent; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 03:03:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 984\nCDSs (total) :: 946\nGenes (coding) :: 937\nCDSs (with protein) :: 937\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 9\nCDSs (without protein) :: 9\nPseudo Genes (ambiguous residues) :: 0 of 9\nPseudo Genes (frameshifted) :: 5 of 9\nPseudo Genes (incomplete) :: 3 of 9\nPseudo Genes (internal stop) :: 1 of 9\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011771966.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012421786.1
GO:0070569 - uridylyltransferase activity [Evidence IEA]
UTP--glucose-1-phosphate uridylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_002662018.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014683113.1
COORDINATES: protein motif:HMM:NF017525.2
COORDINATES: protein motif:HMM:NF033730.0
COORDINATES: protein motif:HMM:NF033729.0
COORDINATES: similar to AA sequence:RefSeq:WP_014683146.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683148.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683152.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539280.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539290.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_001215827.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014683161.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_014683162.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012539414.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539415.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683166.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683167.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683168.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257109.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539422.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539423.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683171.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683172.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683173.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683174.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683175.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539308.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683177.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683178.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539431.1
COORDINATES: protein motif:HMM:NF028354.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539439.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683196.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539443.1
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012539444.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258133.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_012539325.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258127.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539327.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683202.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683203.1
BlyB family putative holin accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_014683205.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683206.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539331.1
DUF276 is restricted to Borreliella and related spirochetes; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010258106.1
COORDINATES: similar to AA sequence:RefSeq:WP_013938088.1