Monodelphis domestica isolate mMonDom1 chromosome Y, mMonDom1.pri, whole genome shotgun sequence.
type: Entry
definition: Monodelphis domestica isolate mMonDom1 chromosome Y, mMonDom1.pri, whole genome shotgun sequence.
sequence version: NC_077236.1
sequence date: 2023-06-05
sequence: sequence
division: CON
label: NC_077236.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA967365
dblink: SAMN31801966
keyword: WGS
keyword: RefSeq
source: Monodelphis domestica (gray short-tailed opossum)
organism: Monodelphis domestica
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM051232.1.\nAssembly name: mMonDom1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/01/18. The original whole-genome shotgun project has the\naccession JAQIHD000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 05-MAY-2022\nAssembly Method :: HiFiasm v. 0.15.4 + galaxy; purge_dups v.\n 1.2.5 + galaxy3; Bionano Solve v. 3.6.1.\n + galaxy2; salsa v. 2.3 + galaxy0\nAssembly Name :: mMonDom1.pri\nDiploid :: Principal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 32.9x\nSequencing Technology :: PacBio Sequel II HiFi; Bionano Genomics\n DLS; Arima Hi-C v2\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_027887165.1-RS_2023_05\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Best-placed RefSeq; Gnomon;\n cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 05/17/2023\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 3184020
topology: linear
so has quality: SO_0000987
location: 1..3184020
location: region:1-3184020:1
RO_0002162: 13616

NC_077236
type: RefSeq
SIO_000068: refseq

PRJNA967365
type: BioProject
SIO_000068: bioproject

SAMN31801966
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3184020:1
position: 3184020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3184020:1:source
so part of: sequence
organism: Monodelphis domestica
mol type: genomic DNA
isolate: mMonDom1
chromosome: Y
sex: male
tissue type: spleen, liver
dev stage: adult
country: USA: Davis, California
lat lon: 38.544907 N 121.740517 W
collection date: 2020-11-01
collected by: Leah Krubitzer, Rebecca Hodge

13616
type: Taxonomy
SIO_000068: taxonomy

LOC130456223
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC130456223
note: cAMP-regulated phosphoprotein 19-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(443414..454222)
location: region:443414-454222:-1
so has part: feature:443414-454222:-1:exon
subclass of: SO_0000010

130456223
type: Gene
SIO_000068: ncbigene

position:443414:-1
position: 443414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:454222:-1
position: 454222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:443414-454222:-1:exon

LOC130456223
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13616
gene: LOC130456223
product: cAMP-regulated phosphoprotein 19-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_056809895.1
SIO_010081: LOC130456223
subclass of: SO_0000673
so part of: LOC130456223
location: complement(join(443414..443804,454107..454222))
location: region:443414-454222:-1
so has part: feature:454107-454222:-1:exon
so has part: feature:443414-443804:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:454107-454222:-1:exon

position:454107:-1
position: 454107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:443414-443804:-1:exon

position:443804:-1
position: 443804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC130456223
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13616
gene: LOC130456223
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cAMP-regulated phosphoprotein 19-like
translation: MSAEIPQATSAEDQKEIEDKVTSPEKAEEAKLKARYPHLGQKSGGSDFLRKQLQKGQKYFDSGDYNMAKAKLKNKQLSTAAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG
SIO_010081: LOC130456223
subclass of: SO_0000673
so part of: LOC130456223
location: complement(443435..443776)
location: region:443435-443776:-1
so has part: feature:443435-443776:-1:exon

XP_056665873.1
type: Protein
SIO_000068: ncbiprotein

position:443435:-1
position: 443435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:443776:-1
position: 443776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:443435-443776:-1:exon

LOC130456221
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC130456221
note: cAMP-regulated phosphoprotein 19-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(481604..509051)
location: region:481604-509051:-1
so has part: feature:481604-509051:-1:exon
subclass of: SO_0000010

130456221
type: Gene
SIO_000068: ncbigene

position:481604:-1
position: 481604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:509051:-1
position: 509051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:481604-509051:-1:exon

LOC130456221
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13616
gene: LOC130456221
product: cAMP-regulated phosphoprotein 19-like, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_056809890.1
SIO_010081: LOC130456221
subclass of: SO_0000673
so part of: LOC130456221
location: complement(join(481604..481999,508949..509051))
location: region:481604-509051:-1
so has part: feature:508949-509051:-1:exon
so has part: feature:481604-481999:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:508949-509051:-1:exon

position:508949:-1
position: 508949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:481604-481999:-1:exon

position:481999:-1
position: 481999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC130456221
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13616
gene: LOC130456221
product: cAMP-regulated phosphoprotein 19-like, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_056809892.1
SIO_010081: LOC130456221
subclass of: SO_0000673
so part of: LOC130456221
location: complement(join(481604..481999,507578..507632))
location: region:481604-507632:-1
so has part: feature:507578-507632:-1:exon
so has part: feature:481604-481999:-1:exon

position:507632:-1
position: 507632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:507578-507632:-1:exon

position:507578:-1
position: 507578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:481604-481999:-1:exon

LOC130456221
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13616
gene: LOC130456221
product: cAMP-regulated phosphoprotein 19-like, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_056809894.1
SIO_010081: LOC130456221
subclass of: SO_0000673
so part of: LOC130456221
location: complement(join(481604..481999,501899..502014))
location: region:481604-502014:-1
so has part: feature:501899-502014:-1:exon
so has part: feature:481604-481999:-1:exon

position:502014:-1
position: 502014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:501899-502014:-1:exon

position:501899:-1
position: 501899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:481604-481999:-1:exon

LOC130456221
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13616
gene: LOC130456221
product: cAMP-regulated phosphoprotein 19-like, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_056809891.1
SIO_010081: LOC130456221
subclass of: SO_0000673
so part of: LOC130456221
location: complement(join(481604..481999,498735..498848))
location: region:481604-498848:-1
so has part: feature:498735-498848:-1:exon
so has part: feature:481604-481999:-1:exon

position:498848:-1
position: 498848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:498735-498848:-1:exon

position:498735:-1
position: 498735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:481604-481999:-1:exon

LOC130456221
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13616
gene: LOC130456221
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cAMP-regulated phosphoprotein 19-like
translation: MSAEIPQAASAEDQKEIEDKVTSPEKAEEAKLKARYPHLGQKSGGSDFLRKQLQKGQKYFDSGDYNMAKAKLKNKQLSTAAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG
SIO_010081: LOC130456221
subclass of: SO_0000673
so part of: LOC130456221
location: complement(481630..481971)
location: region:481630-481971:-1
so has part: feature:481630-481971:-1:exon

XP_056665868.1
type: Protein
SIO_000068: ncbiprotein

position:481630:-1
position: 481630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:481971:-1
position: 481971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:481630-481971:-1:exon

LOC130456221
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13616
gene: LOC130456221
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cAMP-regulated phosphoprotein 19-like
translation: MSAEIPQAASAEDQKEIEDKVTSPEKAEEAKLKARYPHLGQKSGGSDFLRKQLQKGQKYFDSGDYNMAKAKLKNKQLSTAAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG
SIO_010081: LOC130456221
subclass of: SO_0000673
so part of: LOC130456221
location: complement(481630..481971)
location: region:481630-481971:-1
so has part: feature:481630-481971:-1:exon

XP_056665869.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:481630-481971:-1:exon

LOC130456221
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13616
gene: LOC130456221
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cAMP-regulated phosphoprotein 19-like
translation: MSAEIPQAASAEDQKEIEDKVTSPEKAEEAKLKARYPHLGQKSGGSDFLRKQLQKGQKYFDSGDYNMAKAKLKNKQLSTAAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG
SIO_010081: LOC130456221
subclass of: SO_0000673
so part of: LOC130456221
location: complement(481630..481971)
location: region:481630-481971:-1
so has part: feature:481630-481971:-1:exon

XP_056665870.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:481630-481971:-1:exon

LOC130456221
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13616
gene: LOC130456221
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cAMP-regulated phosphoprotein 19-like
translation: MSAEIPQAASAEDQKEIEDKVTSPEKAEEAKLKARYPHLGQKSGGSDFLRKQLQKGQKYFDSGDYNMAKAKLKNKQLSTAAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG
SIO_010081: LOC130456221
subclass of: SO_0000673
so part of: LOC130456221
location: complement(481630..481971)
location: region:481630-481971:-1
so has part: feature:481630-481971:-1:exon

XP_056665872.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:481630-481971:-1:exon

LOC130456220
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC130456220
note: cAMP-regulated phosphoprotein 19-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 617232..631686
location: region:617232-631686:1
so has part: feature:617232-631686:1:exon
subclass of: SO_0000010

130456220
type: Gene
SIO_000068: ncbigene

position:617232:1
position: 617232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:631686:1
position: 631686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:617232-631686:1:exon

LOC130456220
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13616
gene: LOC130456220
product: cAMP-regulated phosphoprotein 19-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_056809889.1
SIO_010081: LOC130456220
subclass of: SO_0000673
so part of: LOC130456220
location: join(617232..617353,631291..631686)
location: region:617232-631686:1
so has part: feature:617232-617353:1:exon
so has part: feature:631291-631686:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:617232-617353:1:exon

position:617353:1
position: 617353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:631291-631686:1:exon

position:631291:1
position: 631291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC130456220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13616
gene: LOC130456220
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cAMP-regulated phosphoprotein 19-like
translation: MSAEIPQATSAEDQKEIEDKVTSPEKAEEAKLKARYPHLGQKSGGSDFLRKQLQKGQKYFDSGDYNMAKAKLKNKQLSTAAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG
SIO_010081: LOC130456220
subclass of: SO_0000673
so part of: LOC130456220
location: 631319..631660
location: region:631319-631660:1
so has part: feature:631319-631660:1:exon

XP_056665867.1
type: Protein
SIO_000068: ncbiprotein

position:631319:1
position: 631319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:631660:1
position: 631660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:631319-631660:1:exon

LOC130456226
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC130456226
note: transmembrane protein 50B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(649988..650538)
location: region:649988-650538:-1
so has part: feature:649988-650538:-1:exon
subclass of: SO_0000010

130456226
type: Gene
SIO_000068: ncbigene

position:649988:-1
position: 649988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:650538:-1
position: 650538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:649988-650538:-1:exon

LOC130456226
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13616
gene: LOC130456226
product: transmembrane protein 50B-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
transcript id: XM_056809900.1
SIO_010081: LOC130456226
subclass of: SO_0000673
so part of: LOC130456226
location: complement(649988..650538)
location: region:649988-650538:-1
so has part: feature:649988-650538:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:649988-650538:-1:exon

LOC130456226
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13616
gene: LOC130456226
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 50B-like
translation: MAGFLDNFRWPECECIDWSERRNAVASVVAGVLFFTGWWIMIDAAVVYPKPEQMNHAFHTYGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLRFGSLIASMWILFGAYVTQNTNVYPGLAVFFQNALIFFSTLIYKFG
SIO_010081: LOC130456226
subclass of: SO_0000673
so part of: LOC130456226
location: complement(650052..650507)
location: region:650052-650507:-1
so has part: feature:650052-650507:-1:exon

XP_056665878.1
type: Protein
SIO_000068: ncbiprotein

position:650052:-1
position: 650052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:650507:-1
position: 650507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:650052-650507:-1:exon

LOC107651027
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC107651027
note: endogenous retrovirus group K member 6 Env polyprotein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 681420..683171
location: region:681420-683171:1
so has part: feature:681420-683171:1:exon
subclass of: SO_0000010

107651027
type: Gene
SIO_000068: ncbigene

position:681420:1
position: 681420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:683171:1
position: 683171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:681420-683171:1:exon

LOC107651027
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13616
gene: LOC107651027
product: endogenous retrovirus group K member 6 Env polyprotein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
transcript id: XM_056809898.1
SIO_010081: LOC107651027
subclass of: SO_0000673
so part of: LOC107651027
location: 681420..683171
location: region:681420-683171:1
so has part: feature:681420-683171:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:681420-683171:1:exon

LOC107651027
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13616
gene: LOC107651027
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endogenous retrovirus group K member 6 Env polyprotein-like
translation: MAFTILTLLNICHAEVYWSIVPKPPILRMLTWRDKPPLVYVNNTDWLPHPILAKRVPLESEGALYNYSGSTVYPPFCMSFRNSFIGNSFCVPRRHQAWIVKNATDNSYVGVGMGVIGMGDELARKTFQPKHPASKYLCPNQIGTVQKELPWTDCSVRVPRKVKMLATTDFNIYNWAPRLRCGRSEQLTRLGKYTDYEKWHMPCQDLQKMEDLLEVDMAGSRLAIEAGPIQNTQWKIVAATQPIYKFKIKVKNSGLDLEYDSHVNVTACVFAPYVMLVGNSLRIFKNDQGLYEINCTKCRLHQCLSPKNQDSYVAIMYHPPLMWVPVDLTETWASAPTVHIIQKAFNMVIHRSKRMVLEIIGAVVSVIAMITSLTTATLALTSSIQNHEFIQEVVSNSSKLWHTQQSIDLAYRDELDSLKDAVFWLGKEVEALHTRITYPCHYNQTGYCITPLPYDNVSYEWQLVVQHIKGAWGSHNSTLDIIKLQQQINKIDQIVYGNEAANIAANWEATLSSLDPQNWFGRANLTSIGTIILFILLAMGLIILCSRSCKNRAYIQGILPELARSYHTRQLVPENVELNTTVP
SIO_010081: LOC107651027
subclass of: SO_0000673
so part of: LOC107651027
location: 681420..683171
location: region:681420-683171:1
so has part: feature:681420-683171:1:exon

XP_056665876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:681420-683171:1:exon

LOC130456225
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC130456225
note: uncharacterized LOC130456225; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(843846..857658)
location: region:843846-857658:-1
so has part: feature:843846-857658:-1:exon
subclass of: SO_0000010

130456225
type: Gene
SIO_000068: ncbigene

position:843846:-1
position: 843846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:857658:-1
position: 857658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:843846-857658:-1:exon

LOC130456225
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13616
gene: LOC130456225
product: uncharacterized LOC130456225, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_056809896.1
SIO_010081: LOC130456225
subclass of: SO_0000673
so part of: LOC130456225
location: complement(join(843846..855264,855848..857658))
location: region:843846-857658:-1
so has part: feature:855848-857658:-1:exon
so has part: feature:843846-855264:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:855848-857658:-1:exon

position:855848:-1
position: 855848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:843846-855264:-1:exon

position:855264:-1
position: 855264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC130456225
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13616
gene: LOC130456225
product: uncharacterized LOC130456225, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_056809897.1
SIO_010081: LOC130456225
subclass of: SO_0000673
so part of: LOC130456225
location: complement(join(843846..855264,855848..857658))
location: region:843846-857658:-1
so has part: feature:855848-857658:-1:exon
so has part: feature:843846-855264:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:855848-857658:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:843846-855264:-1:exon

LOC130456225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13616
gene: LOC130456225
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC130456225 isoform X2
translation: MWGINAQSHPTYFLLSFLSFPYLSVLFLSLPLLLCSLSLFAPSTSYCLFPFLTFIPLLFFLLSLFDSVIPSLTTLESSLPWSPPHPTPFLFSYSVCPLGLSSSTFYLSSPFLPCLSFPLSQAPTPFLSCSPGLLISLSVTLFTSFAPALSLSLSLSSLSFPLNLSQGVSVSSLAISVSILFLNPSLPYSFSLSIYANLGLPVLCPLAPPHTPPFPLCCSLSSCLSISFFPHTLSLPSQLFPFLLCHSLAPSLSLPPSLSHIYVSLCGSLFWLYVSLALQTLSPQSLHLCVYLAHSRLELSLYLFLSVSSLSSTVSLVLSLSVSILRLHF
SIO_010081: LOC130456225
subclass of: SO_0000673
so part of: LOC130456225
location: complement(845457..846446)
location: region:845457-846446:-1
so has part: feature:845457-846446:-1:exon

XP_056665875.1
type: Protein
SIO_000068: ncbiprotein

position:845457:-1
position: 845457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:846446:-1
position: 846446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:845457-846446:-1:exon

LOC130456225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13616
gene: LOC130456225
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC130456225 isoform X1
translation: MWGINAQSHPTYFLLSFLSFPYLSVLFLSLPLLLCSLSLFAPSTSYCLFPFLTFIPLLFFLLSLFDSVIPSLTTLESSLPWSPPHPTPFLFSYSVCPLGLSSSTFYLSSPFLPCLSFPLSQAPTPFLSCSPGLLISLSVTLFTSFAPALSLSLSLSSLSFPLNLSQGVSVSSLAISVSILFLNPSLPYSFSLSIYANLGLPVLCPLAPPHTPPFPLCCSLSSCLSISFFPHTLSLPSQLFPFLLCHSLAPSLSLPPSLSHIYVSLCGSLFWLYVSLALQTLSPQSLHLCVYLAHSRFPFELSLYLFLSVSSLSSTVSLVLSLSVSILRLHF
SIO_010081: LOC130456225
subclass of: SO_0000673
so part of: LOC130456225
location: complement(851440..852435)
location: region:851440-852435:-1
so has part: feature:851440-852435:-1:exon

XP_056665874.1
type: Protein
SIO_000068: ncbiprotein

position:851440:-1
position: 851440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:852435:-1
position: 852435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:851440-852435:-1:exon

LOC130456230
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC130456230
note: uncharacterized LOC130456230; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1028429..1062676)
location: region:1028429-1062676:-1
so has part: feature:1028429-1062676:-1:exon
subclass of: SO_0000011

130456230
type: Gene
SIO_000068: ncbigene

position:1028429:-1
position: 1028429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1062676:-1
position: 1062676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1028429-1062676:-1:exon

LOC130456230
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456230
product: uncharacterized LOC130456230, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914823.1
SIO_010081: LOC130456230
subclass of: SO_0000673
so part of: LOC130456230
location: complement(join(1028429..1028653,1031961..1032053,1062623..1062676))
location: region:1028429-1062676:-1
so has part: feature:1062623-1062676:-1:exon
so has part: feature:1031961-1032053:-1:exon
so has part: feature:1028429-1028653:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1062623-1062676:-1:exon

position:1062623:-1
position: 1062623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1031961-1032053:-1:exon

position:1031961:-1
position: 1031961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1032053:-1
position: 1032053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1028429-1028653:-1:exon

position:1028653:-1
position: 1028653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC130456230
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456230
product: uncharacterized LOC130456230, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914824.1
SIO_010081: LOC130456230
subclass of: SO_0000673
so part of: LOC130456230
location: complement(join(1028429..1028653,1031961..1032053,1038700..1038835))
location: region:1028429-1038835:-1
so has part: feature:1038700-1038835:-1:exon
so has part: feature:1031961-1032053:-1:exon
so has part: feature:1028429-1028653:-1:exon

position:1038835:-1
position: 1038835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1038700-1038835:-1:exon

position:1038700:-1
position: 1038700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1031961-1032053:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1028429-1028653:-1:exon

LOC130456230
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456230
product: uncharacterized LOC130456230, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914825.1
SIO_010081: LOC130456230
subclass of: SO_0000673
so part of: LOC130456230
location: complement(join(1028429..1028653,1031961..1032053,1036572..1037017))
location: region:1028429-1037017:-1
so has part: feature:1036572-1037017:-1:exon
so has part: feature:1031961-1032053:-1:exon
so has part: feature:1028429-1028653:-1:exon

position:1037017:-1
position: 1037017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1036572-1037017:-1:exon

position:1036572:-1
position: 1036572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1031961-1032053:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1028429-1028653:-1:exon

LOC130456230
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456230
product: uncharacterized LOC130456230, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914826.1
SIO_010081: LOC130456230
subclass of: SO_0000673
so part of: LOC130456230
location: complement(join(1028429..1028653,1031961..1032053,1033706..1034340))
location: region:1028429-1034340:-1
so has part: feature:1033706-1034340:-1:exon
so has part: feature:1031961-1032053:-1:exon
so has part: feature:1028429-1028653:-1:exon

position:1034340:-1
position: 1034340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1033706-1034340:-1:exon

position:1033706:-1
position: 1033706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1031961-1032053:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1028429-1028653:-1:exon

LOC130456227
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC130456227
note: uncharacterized LOC130456227; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1096231..1101994)
location: region:1096231-1101994:-1
so has part: feature:1096231-1101994:-1:exon
subclass of: SO_0000011

130456227
type: Gene
SIO_000068: ncbigene

position:1096231:-1
position: 1096231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1101994:-1
position: 1101994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1096231-1101994:-1:exon

LOC130456227
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456227
product: uncharacterized LOC130456227, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914819.1
SIO_010081: LOC130456227
subclass of: SO_0000673
so part of: LOC130456227
location: complement(join(1096231..1096455,1099745..1099837,1101856..1101994))
location: region:1096231-1101994:-1
so has part: feature:1101856-1101994:-1:exon
so has part: feature:1099745-1099837:-1:exon
so has part: feature:1096231-1096455:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1101856-1101994:-1:exon

position:1101856:-1
position: 1101856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1099745-1099837:-1:exon

position:1099745:-1
position: 1099745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1099837:-1
position: 1099837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1096231-1096455:-1:exon

position:1096455:-1
position: 1096455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC130456227
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456227
product: uncharacterized LOC130456227, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914818.1
SIO_010081: LOC130456227
subclass of: SO_0000673
so part of: LOC130456227
location: complement(join(1096231..1096455,1099745..1100134))
location: region:1096231-1100134:-1
so has part: feature:1099745-1100134:-1:exon
so has part: feature:1096231-1096455:-1:exon

position:1100134:-1
position: 1100134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1099745-1100134:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1096231-1096455:-1:exon

LOC107650539
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC107650539
note: endogenous retrovirus group K member 6 Env polyprotein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1717879..1719630
location: region:1717879-1719630:1
so has part: feature:1717879-1719630:1:exon
subclass of: SO_0000010

107650539
type: Gene
SIO_000068: ncbigene

position:1717879:1
position: 1717879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1719630:1
position: 1719630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1717879-1719630:1:exon

LOC107650539
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13616
gene: LOC107650539
product: endogenous retrovirus group K member 6 Env polyprotein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
transcript id: XM_056809899.1
SIO_010081: LOC107650539
subclass of: SO_0000673
so part of: LOC107650539
location: 1717879..1719630
location: region:1717879-1719630:1
so has part: feature:1717879-1719630:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1717879-1719630:1:exon

LOC107650539
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13616
gene: LOC107650539
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endogenous retrovirus group K member 6 Env polyprotein-like
translation: MTFTILTLLNICHAEVYWSIVPKPPILRMLTWMDKPPLVYVNNTDWLPHPILAKRVPLESEGALYNYSGSTVYPPFCMSFRNSFIGNSFCVPRRQQAWIVKNATDNSYVGVGMGVIGMGDELARKTFQPKHPANKYLCPNQIGTVQKELPWTDCSVRVPRKVKMPATTDFNIYNWAPRLRCGRSEQLTRLDKYTDYEKWHMPCQNFQKIEDLLEVDMAGSRLAIEAGPIQNTQWKIVAATQPIYKFKVKVKNSGLDLEYDSHINVTACVFAPYVMLVGNNLRIFKNDQGLYEINCTKCRLHQCLSPKHQDSYVAIMYHPPLMWVPVNLTETWASTPTVHIVQKAFNMVIHRSKRMVFALVGAVVSVIAMITSLTTATLALTSSIQNHEFIQEVVSNSSKLWHTQQSIDLAYRDELDSLKDAVFWLGKEVEALHTRITYPCHYNQTGYCITPSPYDNVSYEWQLVVQHIKGAWGSHNSTLDIIKLQQQINKLDQIVYENEAANIAANWEATLSSLDPQNWFGRANLTSIGTIILFILLAIGLIILCSRSCKNRAYIRGILPELARSYHTRQLVPENVELNTTVL
SIO_010081: LOC107650539
subclass of: SO_0000673
so part of: LOC107650539
location: 1717879..1719630
location: region:1717879-1719630:1
so has part: feature:1717879-1719630:1:exon

XP_056665877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1717879-1719630:1:exon

LOC130456229
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC130456229
note: RNA-binding protein FUS-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1861231..1863037
location: region:1861231-1863037:1
so has part: feature:1861231-1863037:1:exon
subclass of: SO_0000010

130456229
type: Gene
SIO_000068: ncbigene

position:1861231:1
position: 1861231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1863037:1
position: 1863037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1861231-1863037:1:exon

LOC130456229
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13616
gene: LOC130456229
product: RNA-binding protein FUS-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_056809901.1
SIO_010081: LOC130456229
subclass of: SO_0000673
so part of: LOC130456229
location: 1861231..1863037
location: region:1861231-1863037:1
so has part: feature:1861231-1863037:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1861231-1863037:1:exon

LOC130456229
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13616
gene: LOC130456229
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding protein FUS-like
translation: MASNEYTQPATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYGQSADTSGYGQSSYGSSYGQTQNSYGTQSAPQGYGSTSGYGSSQSSQPSYGQQSSYPGYSQQPVPSSTSGSYGSSSQSSSYGQPQSGGYGQQSGYGGQQQSSYGQQQSSYNPPQGYGQQNQYNSSSGGGGGSYGQDQSSMSGGSGGGYGNQDQSGGGSSSSYGGGQQDRGGRGRGGGGGSSSGGGGYNRNSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGFGGGGSGGGSRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKPPKPDGPGGGPGGSHMGGNFGDDRRGGRGGYDRGGYRGRGRDRGGFRGGRGGGDRGGFGPGKMDSRGEHRQDRQERPY
SIO_010081: LOC130456229
subclass of: SO_0000673
so part of: LOC130456229
location: 1861318..1862886
location: region:1861318-1862886:1
so has part: feature:1861318-1862886:1:exon

XP_056665879.1
type: Protein
SIO_000068: ncbiprotein

position:1861318:1
position: 1861318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1862886:1
position: 1862886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1861318-1862886:1:exon

LOC130456231
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC130456231
note: uncharacterized LOC130456231; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2030450..2041042
location: region:2030450-2041042:1
so has part: feature:2030450-2041042:1:exon
subclass of: SO_0000011

130456231
type: Gene
SIO_000068: ncbigene

position:2030450:1
position: 2030450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2041042:1
position: 2041042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2030450-2041042:1:exon

LOC130456231
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456231
product: uncharacterized LOC130456231
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914827.1
SIO_010081: LOC130456231
subclass of: SO_0000673
so part of: LOC130456231
location: join(2030450..2030723,2040818..2041042)
location: region:2030450-2041042:1
so has part: feature:2030450-2030723:1:exon
so has part: feature:2040818-2041042:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2030450-2030723:1:exon

position:2030723:1
position: 2030723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2040818-2041042:1:exon

position:2040818:1
position: 2040818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC130456224
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC130456224
note: uncharacterized LOC130456224; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2386887..2392652
location: region:2386887-2392652:1
so has part: feature:2386887-2392652:1:exon
subclass of: SO_0000011

130456224
type: Gene
SIO_000068: ncbigene

position:2386887:1
position: 2386887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2392652:1
position: 2392652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2386887-2392652:1:exon

LOC130456224
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456224
product: uncharacterized LOC130456224, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914817.1
SIO_010081: LOC130456224
subclass of: SO_0000673
so part of: LOC130456224
location: join(2386887..2387024,2389045..2389137,2392428..2392652)
location: region:2386887-2392652:1
so has part: feature:2386887-2387024:1:exon
so has part: feature:2389045-2389137:1:exon
so has part: feature:2392428-2392652:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2386887-2387024:1:exon

position:2387024:1
position: 2387024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2389045-2389137:1:exon

position:2389045:1
position: 2389045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2389137:1
position: 2389137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2392428-2392652:1:exon

position:2392428:1
position: 2392428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC130456224
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456224
product: uncharacterized LOC130456224, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914815.1
SIO_010081: LOC130456224
subclass of: SO_0000673
so part of: LOC130456224
location: join(2388725..2389137,2392428..2392652)
location: region:2388725-2392652:1
so has part: feature:2388725-2389137:1:exon
so has part: feature:2392428-2392652:1:exon

position:2388725:1
position: 2388725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2388725-2389137:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2392428-2392652:1:exon

LOC130456228
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC130456228
note: uncharacterized LOC130456228; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2426182..2479631
location: region:2426182-2479631:1
so has part: feature:2426182-2479631:1:exon
subclass of: SO_0000011

130456228
type: Gene
SIO_000068: ncbigene

position:2426182:1
position: 2426182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2479631:1
position: 2479631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2426182-2479631:1:exon

LOC130456228
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456228
product: uncharacterized LOC130456228, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914822.1
SIO_010081: LOC130456228
subclass of: SO_0000673
so part of: LOC130456228
location: join(2426182..2426220,2476023..2476115,2479421..2479631)
location: region:2426182-2479631:1
so has part: feature:2426182-2426220:1:exon
so has part: feature:2476023-2476115:1:exon
so has part: feature:2479421-2479631:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2426182-2426220:1:exon

position:2426220:1
position: 2426220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2476023-2476115:1:exon

position:2476023:1
position: 2476023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2476115:1
position: 2476115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2479421-2479631:1:exon

position:2479421:1
position: 2479421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC130456228
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456228
product: uncharacterized LOC130456228, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914821.1
SIO_010081: LOC130456228
subclass of: SO_0000673
so part of: LOC130456228
location: join(2473753..2474370,2476023..2476115,2479421..2479631)
location: region:2473753-2479631:1
so has part: feature:2473753-2474370:1:exon
so has part: feature:2476023-2476115:1:exon
so has part: feature:2479421-2479631:1:exon

position:2473753:1
position: 2473753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2473753-2474370:1:exon

position:2474370:1
position: 2474370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2476023-2476115:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2479421-2479631:1:exon

LOC130456228
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456228
product: uncharacterized LOC130456228, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914820.1
SIO_010081: LOC130456228
subclass of: SO_0000673
so part of: LOC130456228
location: join(2475628..2476115,2479421..2479631)
location: region:2475628-2479631:1
so has part: feature:2475628-2476115:1:exon
so has part: feature:2479421-2479631:1:exon

position:2475628:1
position: 2475628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2475628-2476115:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2479421-2479631:1:exon

LOC130456222
type: Gene
subclass of: SO_0000704
RO_0002162: 13616
gene: LOC130456222
note: uncharacterized LOC130456222; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2854806..2861434)
location: region:2854806-2861434:-1
so has part: feature:2854806-2861434:-1:exon
subclass of: SO_0000011

130456222
type: Gene
SIO_000068: ncbigene

position:2854806:-1
position: 2854806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2861434:-1
position: 2861434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2854806-2861434:-1:exon

LOC130456222
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456222
product: uncharacterized LOC130456222, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914814.1
SIO_010081: LOC130456222
subclass of: SO_0000673
so part of: LOC130456222
location: complement(join(2854806..2855030,2858335..2858427,2861307..2861434))
location: region:2854806-2861434:-1
so has part: feature:2861307-2861434:-1:exon
so has part: feature:2858335-2858427:-1:exon
so has part: feature:2854806-2855030:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2861307-2861434:-1:exon

position:2861307:-1
position: 2861307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2858335-2858427:-1:exon

position:2858335:-1
position: 2858335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2858427:-1
position: 2858427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2854806-2855030:-1:exon

position:2855030:-1
position: 2855030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC130456222
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13616
nc RNA class: lncRNA
gene: LOC130456222
product: uncharacterized LOC130456222, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008914813.1
SIO_010081: LOC130456222
subclass of: SO_0000673
so part of: LOC130456222
location: complement(join(2854806..2855030,2858335..2858758))
location: region:2854806-2858758:-1
so has part: feature:2858335-2858758:-1:exon
so has part: feature:2854806-2855030:-1:exon

position:2858758:-1
position: 2858758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2858335-2858758:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2854806-2855030:-1:exon