Sphingobium amiense strain DSM 16289 plasmid pSAMIE_6, complete sequence.
type: Entry
definition: Sphingobium amiense strain DSM 16289 plasmid pSAMIE_6, complete sequence.
sequence version: NZ_AP018669.1
sequence date: 2022-12-27
sequence: sequence
division: CON
label: NZ_AP018669.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00116355
keyword: RefSeq
source: Sphingobium amiense
organism: Sphingobium amiense
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP018669.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.10.1; Unicycler v. 0.4.0; Canu\n v. 1.5\nGenome Coverage :: 365x\nSequencing Technology :: PacBio RS II; Hiseq 2500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 02:02:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,668\nCDSs (total) :: 4,607\nGenes (coding) :: 4,534\nCDSs (with protein) :: 4,534\nGenes (RNA) :: 61\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 73\nCDSs (without protein) :: 73\nPseudo Genes (ambiguous residues) :: 0 of 73\nPseudo Genes (frameshifted) :: 17 of 73\nPseudo Genes (incomplete) :: 60 of 73\nPseudo Genes (internal stop) :: 7 of 73\nPseudo Genes (multiple problems) :: 9 of 73\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 22371
topology: circular
so has quality: SO_0000988
location: 1..22371
location: region:1-22371:1
RO_0002162: 135719

NZ_AP018669
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00116355
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of the Nonylphenol-Degrading Bacterium Sphingobium amiense DSM 16289T
author: Ootsuka, M.
author: Nishizawa, T.
author: Ohta, H.
journal: Unpublished

2
title: Direct Submission
author: Ootsuka, M.
author: Nishizawa, T.
author: Ohta, H.
journal: Submitted (07-MAY-2018) Contact:Tomoyasu Nishizawa Ibaraki University College of Agriculture, Department of Bioresource sience; 3-21-1 Chuou, Ami, Ibaraki 300-0393, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22371:1
position: 22371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22371:1:source
so part of: sequence
organism: Sphingobium amiense
mol type: genomic DNA
strain: DSM 16289
culture collection: DSM:16289
type material: type strain of Sphingobium amiense
plasmid: pSAMIE_6

135719
type: Taxonomy
SIO_000068: taxonomy

SAMIE_RS22985
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22985
old locus tag: SAMIE_6000010
so part of: sequence
location: 25..678
location: region:25-678:1
so has part: feature:25-678:1:exon
subclass of: SO_0000010

position:25:1
position: 25
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:678:1
position: 678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25-678:1:exon

SAMIE_RS22985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22985
old locus tag: SAMIE_6000010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012554518.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MPTIAIISQKGGAGKTTLALHLAAAAEDSGHTALVIDVDPQATASQWAAWRQDAPPVVIDSAPPRLAAKIEQATGQGAAFIVIDTPPHADSAASAAVEAADLVLIPCRPSAFDLAAIKTTASLVKMRGKPAFVIFTAGSPTAPRMYDEAAQLVQDYGLDACPHHIADRAAFRHAAAEGKTAMEIEPSGKAADEVRQLYKWTCEHVNMQASRKRRANA
SIO_010081: SAMIE_RS22985
subclass of: SO_0000673
so part of: SAMIE_RS22985
location: 25..678
location: region:25-678:1
so has part: feature:25-678:1:exon

WP_007686145.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25-678:1:exon

SAMIE_RS22990
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22990
so part of: sequence
location: 675..989
location: region:675-989:1
so has part: feature:675-989:1:exon
subclass of: SO_0000010

position:675:1
position: 675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:989:1
position: 989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:675-989:1:exon

SAMIE_RS22990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013041578.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRKGSLLALRDRDAAPAPAMVEPEGRAAAPIARGTGAGSGSGSSSNPVAPSRQGKKAMTGYFSPEMSFAMHMTARKHGMSLQDAMAEAFNDWLRKMGESPVGK
SIO_010081: SAMIE_RS22990
subclass of: SO_0000673
so part of: SAMIE_RS22990
location: 675..989
location: region:675-989:1
so has part: feature:675-989:1:exon

WP_007686146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:675-989:1:exon

SAMIE_RS22995
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22995
old locus tag: SAMIE_6000020
so part of: sequence
location: complement(1053..2165)
location: region:1053-2165:-1
so has part: feature:1053-2165:-1:exon
subclass of: SO_0000010

position:1053:-1
position: 1053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2165:-1
position: 2165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1053-2165:-1:exon

SAMIE_RS22995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22995
old locus tag: SAMIE_6000020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008832586.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MTIDPSPSLFDAPIAAPVSAVDGDDRTPLLPVRHPNQDLFICDVLDAIPKDDMASMEHPVFSLSTKPDNRTRRYEHNGNVIEIIPSGKGLATIHDKDILIYCISQLVAKMNQGEQPSRTVRLQAYDMLVATNRQTSGEGYRLMADALTRLRGTTVRTNIQTGGVEETRIFGLIEEAKITRKTFDGRMLDLEITLSDWVYRSVISKNVLTLHRDYFRLRKPFERRMYELARKHCGVKDEWKIGLELLQKKCGSNSPLRVFRALVKKVCEHDADHGHFPDYAVTMDDDVILFRNRSGLKSKPDPVASAGDDAPYIDPETMHDAKTAAPGYDVYALYDEWVSWWHDMGKPELKSPAGAFLGFCKKRHERKPLR
SIO_010081: SAMIE_RS22995
subclass of: SO_0000673
so part of: SAMIE_RS22995
location: complement(1053..2165)
location: region:1053-2165:-1
so has part: feature:1053-2165:-1:exon

WP_007686147.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1053-2165:-1:exon

SAMIE_RS23000
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23000
so part of: sequence
location: complement(3035..3226)
location: region:3035-3226:-1
so has part: feature:3035-3226:-1:exon
subclass of: SO_0000010

position:3035:-1
position: 3035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3226:-1
position: 3226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3035-3226:-1:exon

SAMIE_RS23000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23000
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFLRAECLVDGVLDRDRLRYVTGREVQAGRMTEDDPLRRYALGDDSAFDGLMAAPPPQKRTRH
SIO_010081: SAMIE_RS23000
subclass of: SO_0000673
so part of: SAMIE_RS23000
location: complement(3035..3226)
location: region:3035-3226:-1
so has part: feature:3035-3226:-1:exon

WP_232037504.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3035-3226:-1:exon

SAMIE_RS23005
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23005
old locus tag: SAMIE_6000030
so part of: sequence
location: 3451..6360
location: region:3451-6360:1
so has part: feature:3451-6360:1:exon
subclass of: SO_0000010

position:3451:1
position: 3451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6360:1
position: 6360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3451-6360:1:exon

SAMIE_RS23005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23005
old locus tag: SAMIE_6000030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006961814.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MSLGVSSGDLIGSWSLSFSDIAFVTGKAETARLGLAVQLRFFAGHGFFVPDHASIPSDGVLYLAEQLGLDAKSVNHYDFSGRTARRHCAEILRHLGFRRMTQTDRRALSRWISDDLCAGGQPINAMLEHVFLWCRDRRIYGPSRKELERLVRSQRHLYLEALLARVRDRLAPDAVALLEASLADPDGPTGFNTMKGDAGQATLENILGVTAKLAFIQRLALPRDFLSVTGKAWVDQIVRRVAGEKASEMRRHVPARQLGLYAVYLMAREAQLTDAMVDLLIETVHKIGSRSKRKVVGDIAKDIERVYGKERLLVEIASASIDDPSGRICDVIFPIAGKDKLAAIIKESQAKGALDRRIYKVMRRSWANHYRRMLPSLLSALEFRSNNAVWRPVLAALDWIRSKVDDGCRYVPPHAVPVDEVIPARWRSSVIDEEGRVNRISYELCVLAQLRDRIRSKEIWVVGADRYRNPDDDLPKDFDARREAYYTGLNLTADARAFSSAIREELAQELLLLNANIPRNDKVRLLWRGENRISLTPFKPLPEPRGLASIKTEIGQRWPMTGLLDVLKEAALDTGLLEAFETSASRVALPKTALDQRLLLCLYGLGTNAGLKRIAGATPDVSYEELLHVHRRFVHAAALKEACARVANATLAIRNAAVWGDAGTACASDSTKFGAWDRNLMTEWHARYGGRGVMIYWHVERRATCVYSQLKRCSSSEVASMIEGVLRHCTDMEIQRQYVDSHGQSAVGFAFCRLLGFELAPRLKAIARQKLALPDVGMRTRLPHLQPILSSPINWDEIEQQYDEMVKYAAAMQTKTADPEAILRRFSRSEVMHPTYKALSELGRAVKTIFLCRYLREESFRREIHEGLNVVENWNSANGFVFFGKGGEIATNRIDEQQLSVLALHLLQASLVYVNTRMLQSVLVEPKWTGRMTPDDYRGLTPLIYSHVNPYGRFDLDLNSRIDFGRLAA
SIO_010081: SAMIE_RS23005
subclass of: SO_0000673
so part of: SAMIE_RS23005
location: 3451..6360
location: region:3451-6360:1
so has part: feature:3451-6360:1:exon

WP_006961814.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3451-6360:1:exon

SAMIE_RS23010
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23010
old locus tag: SAMIE_6000040
so part of: sequence
location: 6503..7369
location: region:6503-7369:1
so has part: feature:6503-7369:1:exon
subclass of: SO_0000010

position:6503:1
position: 6503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7369:1
position: 7369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6503-7369:1:exon

SAMIE_RS23010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23010
old locus tag: SAMIE_6000040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006953933.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTRVGYARVSTIDQDLDIQVARLKAAGCEILRSETGSGASRTGRTELETIMQFLRADDELVVLRLDRLGRSTRDVLNLVHELDQKGASLRVLEPEVTTAGSMGRMVITILGMVADMELTFIKDRQRAGIEAARAEGVYKGRKKNIDDDEIRRRITAGASKASVARDLKISRMTVYRALDVIPSRIGLPEKPPSVTIALHLTIENFNKHGRGRKPARERIEAMLERDYQMQKTGNCDYTLTVAYDQGADGVSLDDEIASLQTEMFNIAESYRCSIETDVYEIGGQERAW
SIO_010081: SAMIE_RS23010
subclass of: SO_0000673
so part of: SAMIE_RS23010
location: 6503..7369
location: region:6503-7369:1
so has part: feature:6503-7369:1:exon

WP_006961816.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6503-7369:1:exon

SAMIE_RS23015
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23015
old locus tag: SAMIE_6000050
so part of: sequence
location: complement(7394..7882)
location: region:7394-7882:-1
so has part: feature:7394-7882:-1:exon
subclass of: SO_0000010

position:7394:-1
position: 7394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7882:-1
position: 7882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7394-7882:-1:exon

SAMIE_RS23015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23015
old locus tag: SAMIE_6000050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010165349.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MQTCYNRCSDYFLLQDGAAPTLDDARELFSDVPPEKSAHNQAVLGWKGPGGLYAIAAILRDYPRDGTWYLGFMIVDAAQRGRGVGRSIYSTVESWAAARGATEIRLAVLEANEAAERFWRSLGFIEYRRVGPDTFKMRSHRRIELSRRLSGPVGPKLRFWPC
SIO_010081: SAMIE_RS23015
subclass of: SO_0000673
so part of: SAMIE_RS23015
location: complement(7394..7882)
location: region:7394-7882:-1
so has part: feature:7394-7882:-1:exon

WP_232037505.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7394-7882:-1:exon

SAMIE_RS23020
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23020
old locus tag: SAMIE_6000060
so part of: sequence
location: complement(7958..8722)
location: region:7958-8722:-1
so has part: feature:7958-8722:-1:exon
subclass of: SO_0000010

position:7958:-1
position: 7958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8722:-1
position: 8722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7958-8722:-1:exon

SAMIE_RS23020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23020
old locus tag: SAMIE_6000060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS6100 family transposase
translation: MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
SIO_010081: SAMIE_RS23020
subclass of: SO_0000673
so part of: SAMIE_RS23020
location: complement(7958..8722)
location: region:7958-8722:-1
so has part: feature:7958-8722:-1:exon

WP_001389365.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7958-8722:-1:exon

SAMIE_RS23030
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23030
old locus tag: SAMIE_6000070
so part of: sequence
location: complement(8803..9567)
location: region:8803-9567:-1
so has part: feature:8803-9567:-1:exon
subclass of: SO_0000010

position:8803:-1
position: 8803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9567:-1
position: 9567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8803-9567:-1:exon

SAMIE_RS23030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23030
old locus tag: SAMIE_6000070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS6100 family transposase
translation: MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
SIO_010081: SAMIE_RS23030
subclass of: SO_0000673
so part of: SAMIE_RS23030
location: complement(8803..9567)
location: region:8803-9567:-1
so has part: feature:8803-9567:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8803-9567:-1:exon

SAMIE_RS23040
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23040
so part of: sequence
location: complement(9640..9855)
location: region:9640-9855:-1
so has part: feature:9640-9855:-1:exon
subclass of: SO_0000010

position:9640:-1
position: 9640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9855:-1
position: 9855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9640-9855:-1:exon

SAMIE_RS23040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23040
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAWFYAAEWPTFAPPLTPEIGNDHACCLHPCAPHRLHGVGQVEEDRIDGHEVSIAEAMIALSIIWCAFGRP
SIO_010081: SAMIE_RS23040
subclass of: SO_0000673
so part of: SAMIE_RS23040
location: complement(9640..9855)
location: region:9640-9855:-1
so has part: feature:9640-9855:-1:exon

WP_126516977.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9640-9855:-1:exon

SAMIE_RS23045
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
gene: istB
locus tag: SAMIE_RS23045
old locus tag: SAMIE_6000080
so part of: sequence
location: complement(9928..10695)
location: region:9928-10695:-1
so has part: feature:9928-10695:-1:exon
subclass of: SO_0000010

position:9928:-1
position: 9928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10695:-1
position: 10695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9928-10695:-1:exon

SAMIE_RS23045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
gene: istB
locus tag: SAMIE_RS23045
old locus tag: SAMIE_6000080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007011060.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21-like element ISSsp5 family helper ATPase IstB
translation: MSDQAPEILLAHHLKALKLPTCLREHHKLARQCAAEGVDHIRFLARLVEMEMIDRERRMVERRIKAARFPAVKSLDSFDFAAIPRLNKMQVLEMARCEWIERRENAIALGPSGTGKTHVALGLGLAACQKGLSVGFTTAAALVSEMMEARDERRLLRFQKQMAGYKLLIIDELGFVPLSKTGAELLFELISQRYERGSTFITSNLPFDEWTETFGSERLTGALLDRLTHHVSILEMNGESYRLAHSRARKAKTRP
SIO_010081: SAMIE_RS23045
subclass of: SO_0000673
so part of: SAMIE_RS23045
location: complement(9928..10695)
location: region:9928-10695:-1
so has part: feature:9928-10695:-1:exon

WP_007686288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9928-10695:-1:exon

SAMIE_RS23050
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
gene: istA
locus tag: SAMIE_RS23050
old locus tag: SAMIE_6000090
so part of: sequence
location: complement(10692..12143)
location: region:10692-12143:-1
so has part: feature:10692-12143:-1:exon
subclass of: SO_0000010

position:10692:-1
position: 10692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12143:-1
position: 12143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10692-12143:-1:exon

SAMIE_RS23050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
gene: istA
locus tag: SAMIE_RS23050
old locus tag: SAMIE_6000090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017502826.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21 family transposase
translation: MSQRAAAKRFNVSRETVRKMLSFSSPPGYRRQSVPQRPKLDGFVAIIDGWLEGDRSVPRKQRHTAKRVFDRLRTEHGFTGGYTIIKDYIREREQRSREMFVPLAHPAGDAQADFGEALVEIGGVEQKAYFFALDLPHSDACYVRAYPAAVAEAWVDGHVHAFAFFGAVPRSIVYDNDRCLVTKILPDGTRQRATLFSAFLSHYVIRDRYARPGKGNEKGNVEGLVGYCRRNFMVPIPKFPTWEAFNLWLEEQCRKRQQDKVRGQSETIGERLQRDLAAMQPLPATPFEACDQKGGRVSSQSLVRYRTNDYSVPVAWGHQEVWIRAYVDEVVIGCRSEVIARHPRCYAREEVVFDPLHYLPLIEQKINAFDQAAPLQGWDLPEAFTTLQRLMEGRMHKHGRREYVQVLRLLETFTLADLQAAVEQAIDLGAIGFDAVKHLVLCRIERVPPRLDLDVYPFLPRTTVEKTFARAYLSLLSDRQEAA
SIO_010081: SAMIE_RS23050
subclass of: SO_0000673
so part of: SAMIE_RS23050
location: complement(10692..12143)
location: region:10692-12143:-1
so has part: feature:10692-12143:-1:exon

WP_206378527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10692-12143:-1:exon

SAMIE_RS23055
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23055
old locus tag: SAMIE_6000100
so part of: sequence
location: 13121..13450
location: region:13121-13450:1
so has part: feature:13121-13450:1:exon
subclass of: SO_0000010

position:13121:1
position: 13121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13450:1
position: 13450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13121-13450:1:exon

SAMIE_RS23055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23055
old locus tag: SAMIE_6000100
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASTTVTLTGCGQDTGTDGAENTIVENVQVTLPPSIKASHPYRCEDNSVVTIDFLSDDVTINLRSEGTISQLKAPAPGEAFTDGKHTVAGDEAAIELTRPGKKPQTCKM
SIO_010081: SAMIE_RS23055
subclass of: SO_0000673
so part of: SAMIE_RS23055
location: 13121..13450
location: region:13121-13450:1
so has part: feature:13121-13450:1:exon

WP_126516978.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13121-13450:1:exon

SAMIE_RS23060
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23060
old locus tag: SAMIE_6000110
so part of: sequence
location: 13465..14382
location: region:13465-14382:1
so has part: feature:13465-14382:1:exon
subclass of: SO_0000010

position:13465:1
position: 13465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14382:1
position: 14382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13465-14382:1:exon

SAMIE_RS23060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23060
old locus tag: SAMIE_6000110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007709836.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MipA/OmpV family protein
translation: MALFELSAGERRAAPAGQEIREHGLAWRHDVRPTPFKGEARHFPKRCEYLCMTLSSRIGRLAWPTLLLAALALPAAASAQSGDHVTLGAGAGVVPDYQGSDDYRFLPIPVIDAQFGQFFVSLRNGIGVNVIEIGPLTAGASVALVGGYRRRDVPDGIRRVSTTAGGRLFANLKLDNLSFTVGATKAVEGGTRGVVADASLSYALPVSDRMTVIPTIGTSWANGKHMNRYFGIDASEAIASGLPFYRAGSGFKDVSGLITASYRLDSHWSLGATGGVTRLLGDAADSPLNERRWQPSGFMSVAYTF
SIO_010081: SAMIE_RS23060
subclass of: SO_0000673
so part of: SAMIE_RS23060
location: 13465..14382
location: region:13465-14382:1
so has part: feature:13465-14382:1:exon

WP_232037503.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13465-14382:1:exon

SAMIE_RS23065
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23065
old locus tag: SAMIE_6000120
so part of: sequence
location: 14494..15756
location: region:14494-15756:1
so has part: feature:14494-15756:1:exon
subclass of: SO_0000010

position:14494:1
position: 14494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15756:1
position: 15756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14494-15756:1:exon

SAMIE_RS23065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23065
old locus tag: SAMIE_6000120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010236724.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0004620 - phospholipase activity [Evidence IEA]
GO process: GO:0006629 - lipid metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phospholipase A
translation: MLRRVRPMIRYGGAVCIALGLAAGPTRAEAGTTASQIELVISAVADGDAYGAASVELRLLNSGSAPEAMALPPQIGAELTVNRSTSNISLERAPQTPAAVSVPAGGFTRARYILHLPPHTAAGEAVLAVPGWSAQRLAFAVGGSVSAPPPAPAGGGAGPATPRWDTSVPQTHLATNDVAAGNAFLSNLSAYAPIYAAYGPGTNSDARLQISFKYQLFGPSAAPDRRQSWEQGLHFAYTQRMFWDLGAKSSPFRNIDFVPELFYLAPTIGIGSGVSLGGQGGFRHESNGRSGAGSRSLNTLYVQPVASVALGSYRLSVGPRLWLYAGSLSDNPDIKRYRGNTGLFAEIGEDDGLRITTNTRLNFGSGKGAIDADISYPIDRLIGGNLNFYLFGQAFTGYGENLLDYNRRMTRLRVGLAIVR
SIO_010081: SAMIE_RS23065
subclass of: SO_0000673
so part of: SAMIE_RS23065
location: 14494..15756
location: region:14494-15756:1
so has part: feature:14494-15756:1:exon

WP_081490922.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14494-15756:1:exon

SAMIE_RS23070
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23070
old locus tag: SAMIE_6000130
so part of: sequence
location: 15753..16391
location: region:15753-16391:1
so has part: feature:15753-16391:1:exon
subclass of: SO_0000010

position:15753:1
position: 15753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16391:1
position: 16391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15753-16391:1:exon

SAMIE_RS23070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23070
old locus tag: SAMIE_6000130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010165387.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO process: GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sigma-70 family RNA polymerase sigma factor
translation: MNAFKHRRTGFRPLAQQSERIDGLFDDNFGAGLIEQAASLSAYARRLTGSGGADADDLLQETMLRCWVARRSFVPDTNLGAWMRTVMRNSFLSGRRRAPFHADLPEDAFDRLLGVAGGQGAAVDLRDVNWALGELIPDQRAAILLAAEGLSIEEAAASLAIPAGTFKSRLWRGRLRLKRLIEHRDTPLLDRRVVEKHSKPRPRRNWKGVVIG
SIO_010081: SAMIE_RS23070
subclass of: SO_0000673
so part of: SAMIE_RS23070
location: 15753..16391
location: region:15753-16391:1
so has part: feature:15753-16391:1:exon

WP_017183397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15753-16391:1:exon

SAMIE_RS23075
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23075
old locus tag: SAMIE_6000140
so part of: sequence
location: 16758..17153
location: region:16758-17153:1
so has part: feature:16758-17153:1:exon
subclass of: SO_0000010

position:16758:1
position: 16758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17153:1
position: 17153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16758-17153:1:exon

SAMIE_RS23075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23075
old locus tag: SAMIE_6000140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004213344.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDQDEDTAFADNYAERDQAKALREQARAGGLRFEAYLTGDQADWLLERIERGMFADPSEAVFAIVKNFIDMEPHHDLRDELLRRILDGSIKRGLEDAEAGRVRDADEVFDELRRKMAAPRPAPARWEKIAR
SIO_010081: SAMIE_RS23075
subclass of: SO_0000673
so part of: SAMIE_RS23075
location: 16758..17153
location: region:16758-17153:1
so has part: feature:16758-17153:1:exon

WP_008831331.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16758-17153:1:exon

SAMIE_RS23080
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23080
old locus tag: SAMIE_6000150
so part of: sequence
location: 17150..18118
location: region:17150-18118:1
so has part: feature:17150-18118:1:exon
subclass of: SO_0000010

position:17150:1
position: 17150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18118:1
position: 18118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17150-18118:1:exon

SAMIE_RS23080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23080
old locus tag: SAMIE_6000150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004212934.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MNQLAPLPAPAPALALPALIAAADERAQLRFLEFFAVTIRNPHTRRAYARAAGDFLAWCEARGVASLAQVQPLHVAAWVEALGRELAAPSVKQQLAGVRHLFDWLVTGHAVPANPAGSVRGPAHSQRRGKTPVLAPDEARRLLDSIDVTTHAGLRDRALIGLMVYSFARIGAALAMRVEDVFMQNRRLWVRLHEKGGKRHEMPCHHNLEDYLTAYIDGCELREDRKGPLFRTIARSTKRLSDTPLPQANAFAMVRRRAAAAGIGTAIGNHSFRATGITTYLKNGGTLETAATMANHSSTRTTQLYDRRPDDVTLDEVERVLI
SIO_010081: SAMIE_RS23080
subclass of: SO_0000673
so part of: SAMIE_RS23080
location: 17150..18118
location: region:17150-18118:1
so has part: feature:17150-18118:1:exon

WP_008831330.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17150-18118:1:exon

SAMIE_RS23085
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23085
old locus tag: SAMIE_6000160
so part of: sequence
location: complement(18115..18735)
location: region:18115-18735:-1
so has part: feature:18115-18735:-1:exon
subclass of: SO_0000010

position:18115:-1
position: 18115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18735:-1
position: 18735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18115-18735:-1:exon

SAMIE_RS23085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23085
old locus tag: SAMIE_6000160
EC number: 3.1.3.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004213387.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histidine phosphatase family protein
translation: MRAIFIRHGENTGNAGVPCHDLATIALTERGHEQARAVAASWTQAPALIVTSPYTRTRQTAAPTIARFPGVPVEVWPIEEFTYLQPARWNGTRSAERMPHLERYWREADPDYCDGEGAESFSTLLRRCEAALTRLAAMPAGSLAYVFGHGQFIQAARAIVADAHLDDRAKMRAFWRKGEPPAIGNAQRVGFHWQGDRWTCAPALAA
SIO_010081: SAMIE_RS23085
subclass of: SO_0000673
so part of: SAMIE_RS23085
location: complement(18115..18735)
location: region:18115-18735:-1
so has part: feature:18115-18735:-1:exon

WP_008831329.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18115-18735:-1:exon

SAMIE_RS23090
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23090
old locus tag: SAMIE_6000170
so part of: sequence
location: complement(18742..19194)
location: region:18742-19194:-1
so has part: feature:18742-19194:-1:exon
subclass of: SO_0000010

position:18742:-1
position: 18742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19194:-1
position: 19194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18742-19194:-1:exon

SAMIE_RS23090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23090
old locus tag: SAMIE_6000170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008831328.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2442 domain-containing protein
translation: MNITDKARTITAVRATGPSSLHLSWSEGTAADLDLGAVLADRAFAALRDPGEFAKVEVGDWGHSLAWPSGAELGADMLWLETLSATGHGDVRAFLEWRLRHALSLSKAADALGVSRRMVAYYSNGEKKVPKPILLACRGWEASNGLYRAA
SIO_010081: SAMIE_RS23090
subclass of: SO_0000673
so part of: SAMIE_RS23090
location: complement(18742..19194)
location: region:18742-19194:-1
so has part: feature:18742-19194:-1:exon

WP_008831328.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18742-19194:-1:exon

SAMIE_RS23095
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23095
so part of: sequence
location: complement(19191..19418)
location: region:19191-19418:-1
so has part: feature:19191-19418:-1:exon
subclass of: SO_0000010

position:19191:-1
position: 19191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19418:-1
position: 19418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19191-19418:-1:exon

SAMIE_RS23095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017503387.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4160 domain-containing protein
translation: MVTMFRGPRWKIAVYGRDHGVPHFHIEGPDFRCSVAIASFDVIVGTVSAAVLKDALEWARPNQALLMQTWQELNG
SIO_010081: SAMIE_RS23095
subclass of: SO_0000673
so part of: SAMIE_RS23095
location: complement(19191..19418)
location: region:19191-19418:-1
so has part: feature:19191-19418:-1:exon

WP_020817904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19191-19418:-1:exon

SAMIE_RS23105
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23105
so part of: sequence
location: complement(19755..19961)
location: region:19755-19961:-1
so has part: feature:19755-19961:-1:exon
subclass of: SO_0000010

position:19755:-1
position: 19755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19961:-1
position: 19961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19755-19961:-1:exon

SAMIE_RS23105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013038659.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAGHRPFSDLMKDWSPERRARNEAHKAKLEAELMGRAATRDAIEELEAGKGVRFTSVEALMSDLHDDD
SIO_010081: SAMIE_RS23105
subclass of: SO_0000673
so part of: SAMIE_RS23105
location: complement(19755..19961)
location: region:19755-19961:-1
so has part: feature:19755-19961:-1:exon

WP_008831325.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19755-19961:-1:exon

SAMIE_RS23110
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23110
so part of: sequence
location: complement(19975..20136)
location: region:19975-20136:-1
so has part: feature:19975-20136:-1:exon
subclass of: SO_0000010

position:19975:-1
position: 19975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20136:-1
position: 20136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19975-20136:-1:exon

SAMIE_RS23110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23110
inference: COORDINATES: protein motif:HMM:NF013540.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MRQESGLSQAGFARLLWAHKRTVQRWEAGTMRPTGAALALLTLVKRRGIQILT
SIO_010081: SAMIE_RS23110
subclass of: SO_0000673
so part of: SAMIE_RS23110
location: complement(19975..20136)
location: region:19975-20136:-1
so has part: feature:19975-20136:-1:exon

WP_015449421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19975-20136:-1:exon

SAMIE_RS23115
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23115
old locus tag: SAMIE_6000180
so part of: sequence
location: complement(20188..20607)
location: region:20188-20607:-1
so has part: feature:20188-20607:-1:exon
subclass of: SO_0000010

position:20188:-1
position: 20188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20607:-1
position: 20607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20188-20607:-1:exon

SAMIE_RS23115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23115
old locus tag: SAMIE_6000180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007685989.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: XRE family transcriptional regulator
translation: MNADDMKVETFACVFDAIADTPEEATELRTRADLMRGITARVKSWDVPLGEAAKRLGLTPPRLNDLLRGKFNRFSLDDLMTAATAAVIAPPAPRKSSWDDLRGIVKGNGARFTIEEINDAIAEAGAAAGMAGMNDHDGD
SIO_010081: SAMIE_RS23115
subclass of: SO_0000673
so part of: SAMIE_RS23115
location: complement(20188..20607)
location: region:20188-20607:-1
so has part: feature:20188-20607:-1:exon

WP_066704185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20188-20607:-1:exon

SAMIE_RS23120
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23120
old locus tag: SAMIE_6000190
so part of: sequence
location: complement(20643..20963)
location: region:20643-20963:-1
so has part: feature:20643-20963:-1:exon
subclass of: SO_0000010

position:20643:-1
position: 20643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20963:-1
position: 20963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20643-20963:-1:exon

SAMIE_RS23120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23120
old locus tag: SAMIE_6000190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007685988.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MPSTKKPASSKRASFPREASYEKRFVKDWERLSRSGRYNMNQLKEAMMLLIANDAPLGPEWLDHALKGDWSDHRECHIGGDFLLIYTIEGNLVNFVRAGTHSELFE
SIO_010081: SAMIE_RS23120
subclass of: SO_0000673
so part of: SAMIE_RS23120
location: complement(20643..20963)
location: region:20643-20963:-1
so has part: feature:20643-20963:-1:exon

WP_007685988.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20643-20963:-1:exon

SAMIE_RS23125
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23125
old locus tag: SAMIE_6000200
so part of: sequence
location: complement(20932..21213)
location: region:20932-21213:-1
so has part: feature:20932-21213:-1:exon
subclass of: SO_0000010

position:20932:-1
position: 20932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21213:-1
position: 21213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20932-21213:-1:exon

SAMIE_RS23125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23125
old locus tag: SAMIE_6000200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017503755.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MAATAFVRARIDETLKDEAAAVLAELGLTVSDVVRMTLTRVAKDHALPFELKVPNAETRAAIESSRATMKARRARFTDPKELFDALDQEARQQ
SIO_010081: SAMIE_RS23125
subclass of: SO_0000673
so part of: SAMIE_RS23125
location: complement(20932..21213)
location: region:20932-21213:-1
so has part: feature:20932-21213:-1:exon

WP_007685985.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20932-21213:-1:exon

SAMIE_RS23135
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23135
old locus tag: SAMIE_6000210
so part of: sequence
location: 21628..22269
location: region:21628-22269:1
so has part: feature:21628-22269:1:exon
subclass of: SO_0000010

position:21628:1
position: 21628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22269:1
position: 22269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21628-22269:1:exon

SAMIE_RS23135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23135
old locus tag: SAMIE_6000210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008831324.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SprT-like domain-containing protein
translation: MEQDNRESWLNRVAAGMAPLFAALDAPLPARIRVAIGFTSSGRKGKAIGECWDNRLSADGHFEIFIRPDLAHAPDAMPAQIAAILAHELVHAAVGIPAGHGKAFKRIALGLGLVGPMRATTPGEAFLAAVAPILDAVGPLPHARLDTDGESTAPKKQKTRMLKCECATCGYTVRTARKWLELAGAPLCPIEDHGRMEHEPLDDGSEDEGGDDG
SIO_010081: SAMIE_RS23135
subclass of: SO_0000673
so part of: SAMIE_RS23135
location: 21628..22269
location: region:21628-22269:1
so has part: feature:21628-22269:1:exon

WP_008831324.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21628-22269:1:exon