Sphingobium amiense strain DSM 16289 plasmid pSAMIE_5, complete sequence.
type: Entry
definition: Sphingobium amiense strain DSM 16289 plasmid pSAMIE_5, complete sequence.
sequence version: NZ_AP018668.1
sequence date: 2022-12-27
sequence: sequence
division: CON
label: NZ_AP018668.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00116355
keyword: RefSeq
source: Sphingobium amiense
organism: Sphingobium amiense
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP018668.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.10.1; Unicycler v. 0.4.0; Canu\n v. 1.5\nGenome Coverage :: 365x\nSequencing Technology :: PacBio RS II; Hiseq 2500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 02:02:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,668\nCDSs (total) :: 4,607\nGenes (coding) :: 4,534\nCDSs (with protein) :: 4,534\nGenes (RNA) :: 61\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 73\nCDSs (without protein) :: 73\nPseudo Genes (ambiguous residues) :: 0 of 73\nPseudo Genes (frameshifted) :: 17 of 73\nPseudo Genes (incomplete) :: 60 of 73\nPseudo Genes (internal stop) :: 7 of 73\nPseudo Genes (multiple problems) :: 9 of 73\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 39623
topology: circular
so has quality: SO_0000988
location: 1..39623
location: region:1-39623:1
RO_0002162: 135719

NZ_AP018668
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00116355
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of the Nonylphenol-Degrading Bacterium Sphingobium amiense DSM 16289T
author: Ootsuka, M.
author: Nishizawa, T.
author: Ohta, H.
journal: Unpublished

2
title: Direct Submission
author: Ootsuka, M.
author: Nishizawa, T.
author: Ohta, H.
journal: Submitted (07-MAY-2018) Contact:Tomoyasu Nishizawa Ibaraki University College of Agriculture, Department of Bioresource sience; 3-21-1 Chuou, Ami, Ibaraki 300-0393, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39623:1
position: 39623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-39623:1:source
so part of: sequence
organism: Sphingobium amiense
mol type: genomic DNA
strain: DSM 16289
culture collection: DSM:16289
type material: type strain of Sphingobium amiense
plasmid: pSAMIE_5

135719
type: Taxonomy
SIO_000068: taxonomy

SAMIE_RS22770
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22770
old locus tag: SAMIE_5000010
so part of: sequence
location: 1..642
location: region:1-642:1
so has part: feature:1-642:1:exon
subclass of: SO_0000010

position:642:1
position: 642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-642:1:exon

SAMIE_RS22770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22770
old locus tag: SAMIE_5000010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007406350.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MILAVGNTKGGVGKTTLAVNLAVALALAGRDLLLVDGDEQGTALTFTQLRTERLGEAGYTAVALTGAALRSQVRQLAGKYDDIIIDVGGRDTGSLRAALTVADTLLVPVQPRSFDVWALDQVAALVAEAREINDGLRAVAILNGADAQGADNEAALEMIGDIEGIEVLPTSIVRRKAFPNAAAEGRAILEQSPRDPKAIDELTALIAAVCISR
SIO_010081: SAMIE_RS22770
subclass of: SO_0000673
so part of: SAMIE_RS22770
location: 1..642
location: region:1-642:1
so has part: feature:1-642:1:exon

WP_066703227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-642:1:exon

SAMIE_RS22775
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22775
so part of: sequence
location: 660..938
location: region:660-938:1
so has part: feature:660-938:1:exon
subclass of: SO_0000010

position:660:1
position: 660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:938:1
position: 938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:660-938:1:exon

SAMIE_RS22775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22775
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015460617.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIARKPNSKPRAPAADAAADAFIAGAAKLAAVPIAAAEEAGEGGEPRKLPVMLRFDRALLAKVDAAAKRRGISRSAWIQFTVSRALDAGEG
SIO_010081: SAMIE_RS22775
subclass of: SO_0000673
so part of: SAMIE_RS22775
location: 660..938
location: region:660-938:1
so has part: feature:660-938:1:exon

WP_066703233.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:660-938:1:exon

SAMIE_RS22780
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22780
old locus tag: SAMIE_5000020
so part of: sequence
location: complement(955..1377)
location: region:955-1377:-1
so has part: feature:955-1377:-1:exon
subclass of: SO_0000010

position:955:-1
position: 955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1377:-1
position: 1377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:955-1377:-1:exon

SAMIE_RS22780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22780
old locus tag: SAMIE_5000020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013394241.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SgcJ/EcaC family oxidoreductase
translation: MTHLAEPEDAPEAFQSAWNAHDMAAFGRLFHDDAAFVNRFGHYVRGVDEIIDLHQPIHETIYRDSTLENELIDATPIGPPVAIVHFWSRLRTGPAHPAGAHDVDTLILAVLACRDGAWRIQALENVTLTNPRTGEPVLRR
SIO_010081: SAMIE_RS22780
subclass of: SO_0000673
so part of: SAMIE_RS22780
location: complement(955..1377)
location: region:955-1377:-1
so has part: feature:955-1377:-1:exon

WP_126516973.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:955-1377:-1:exon

SAMIE_RS22785
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22785
old locus tag: SAMIE_5000030
so part of: sequence
location: complement(1428..2303)
location: region:1428-2303:-1
so has part: feature:1428-2303:-1:exon
subclass of: SO_0000010

position:1428:-1
position: 1428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2303:-1
position: 2303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1428-2303:-1:exon

SAMIE_RS22785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22785
old locus tag: SAMIE_5000030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010165325.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MTQAALAETARTLTQRGRGNPFDPANYGEIVKPGELVDIVELSPLTLADRRIYNLLIANAWDRIGEPVIHRIAKSALKGTHQGNERIESSLLRLMGTIAIVTIRKGNKSFKRRVQLLGPSDESLEKDGFLHYRIPEELIEILRNSEVYARLKTQVMYCFESKYALCLYEMIERRIGLEYKQSEEFTIAELRGLLNVPDGKLERFADLNKYCLKVAQEEINKLCPFYVEFTPIKKGRKVERVSMMWLPKTSSGRRDAQNLIDQHSIVRRAKLRGGIPEMPVLVDFSLPAAER
SIO_010081: SAMIE_RS22785
subclass of: SO_0000673
so part of: SAMIE_RS22785
location: complement(1428..2303)
location: region:1428-2303:-1
so has part: feature:1428-2303:-1:exon

WP_066703130.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1428-2303:-1:exon

SAMIE_RS22790
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22790
old locus tag: SAMIE_5000040
so part of: sequence
location: complement(3490..5148)
location: region:3490-5148:-1
so has part: feature:3490-5148:-1:exon
subclass of: SO_0000010

position:3490:-1
position: 3490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5148:-1
position: 5148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3490-5148:-1:exon

SAMIE_RS22790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22790
old locus tag: SAMIE_5000040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004213374.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MEWLRQLGRAIRNLARISRQNPIWAITALTLSPIALIRHLFRVAILFLIVGIVLAGGMQFMLHALLGLPRDSNLYQIVMMLTFLVIILAGLRALFQPLILKYGGPEGDATHGSARFATDAEARPLAQSEGLLIGRDRKSGKLLRYAGPAHLLTIAPTRTGKGVGTIIPNLIDYPGPVVCIDPKGENARVTARQRARFGPVHVLDPFGVTELPSAAFNPLDRLDPAGLDLADDAMTLADALVYDAPGEAGEAHWNEEAKALIAGIILSIATTEPPATRTLATLRDRLTLAPAAFAAMLETMQAQGGLAARAANRHLGKSDREAAGVLSAAQRHTHFLDSPRMTAVLDRSDFAFADLKASPASIYLVLPPDRLATYARWLRLMIAQGLTDLARAGVAPARPVLFLLDEFAALGRLDPVERAMGLMAGYGVQLWPILQDVHQLRATYERRAGTFLSNAGVLQVFGVNDHDSARLVSDLLGQETVVFETMSRALDAEETGLSFGTQHVGRALLTPDEVRAMPANLELLFLAGQRPIIASKLRYYADREFAGKFDPA
SIO_010081: SAMIE_RS22790
subclass of: SO_0000673
so part of: SAMIE_RS22790
location: complement(3490..5148)
location: region:3490-5148:-1
so has part: feature:3490-5148:-1:exon

WP_066703133.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3490-5148:-1:exon

SAMIE_RS22795
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22795
so part of: sequence
location: complement(5151..5432)
location: region:5151-5432:-1
so has part: feature:5151-5432:-1:exon
subclass of: SO_0000010

position:5151:-1
position: 5151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5432:-1
position: 5432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5151-5432:-1:exon

SAMIE_RS22795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004213373.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTLDVESIRRQVRALKFRRGSLVEVALWREDDADARANLAIEGMALTPDEEALFDMLRDEAVPPPLATAIVLKLLDHPDADPALAISPIGRA
SIO_010081: SAMIE_RS22795
subclass of: SO_0000673
so part of: SAMIE_RS22795
location: complement(5151..5432)
location: region:5151-5432:-1
so has part: feature:5151-5432:-1:exon

WP_066703136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5151-5432:-1:exon

SAMIE_RS22800
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22800
so part of: sequence
location: complement(5429..5647)
location: region:5429-5647:-1
so has part: feature:5429-5647:-1:exon
subclass of: SO_0000010

position:5429:-1
position: 5429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5647:-1
position: 5647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5429-5647:-1:exon

SAMIE_RS22800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007686160.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MARRERTRHLIELGGLVQKAGLVDLADDDRATLYGALLEAAAKAREDGNALALWKRRGRRAFDAEAEGKDAP
SIO_010081: SAMIE_RS22800
subclass of: SO_0000673
so part of: SAMIE_RS22800
location: complement(5429..5647)
location: region:5429-5647:-1
so has part: feature:5429-5647:-1:exon

WP_066703137.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5429-5647:-1:exon

SAMIE_RS22805
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22805
old locus tag: SAMIE_5000050
so part of: sequence
location: complement(5685..5987)
location: region:5685-5987:-1
so has part: feature:5685-5987:-1:exon
subclass of: SO_0000010

position:5685:-1
position: 5685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5987:-1
position: 5987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5685-5987:-1:exon

SAMIE_RS22805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22805
old locus tag: SAMIE_5000050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013038674.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MRKTRDYDAELRALVDKAKALKARKVQQLGELVTATGADALDIETLAGALIAAVEANVEAKEVWRAKGVAFFQRRGRKGGRGAASDDREPSEAGAGGSQG
SIO_010081: SAMIE_RS22805
subclass of: SO_0000673
so part of: SAMIE_RS22805
location: complement(5685..5987)
location: region:5685-5987:-1
so has part: feature:5685-5987:-1:exon

WP_066703139.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5685-5987:-1:exon

SAMIE_RS22810
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
gene: traA
locus tag: SAMIE_RS22810
old locus tag: SAMIE_5000060
so part of: sequence
location: 6160..9321
location: region:6160-9321:1
so has part: feature:6160-9321:1:exon
subclass of: SO_0000010

position:6160:1
position: 6160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9321:1
position: 9321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6160-9321:1:exon

SAMIE_RS22810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
gene: traA
locus tag: SAMIE_RS22810
old locus tag: SAMIE_5000060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015449240.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Ti-type conjugative transfer relaxase TraA
translation: MAIYHFSAKVISRANGSSAVASAAYRSASELHDDRLGRDHDFSNKAGVVHSEIMLPEGAPERLNDRATLWNEVEAGEKRKDAQLAREVEFSIPRELNQQQGVQLAREFVEKQFVERGMVADLNVHWDMGKDGQPKPHAHVMLAMREVRPEGFGAKVREWNSTQLLQGWREAWADHVNERLAELDIDARIDHRTLQAQGIELEPQHKIGPAASRMPEQGLEAERVEDHARIARENGEKIIANPQIALDAITRQQATFTRRNLAQFAFRHSDGKDQFDQVMGAVRASPELVALGKDGRGEDRFTSRDMIETEQRLERAGDRLGERTGHGLPAASLQRGLDAAGSGGLVLGDQQQDALAHITGQNDLAIVVGYAGTGKSAMLGVARDEWERAGYQVRGAALSGIAAEGLEGGSGIASRTIASMEYQWNQGRELLGPRDVLVIDEAGMIGTRQMERVLSEAERAGAKVVLVGDAEQLQAIEAGAAFRALAERHGAAEINEVRRQHEDWQKEATRALATGRTGEAVHAYERHGMVHAAETREQARSDLVDRWDAQRVADPDQTRIILTHTNAEVRDLNLAARDRLRDAGELGADVRVSAERGAREFAQGDRIMFLKNERGLGVKNGTLGRIERVSPDSMAVRLDDGRSVAFDLKDYAHVDHGYAATIHKSQGVTVDQAHVLATPGMDRHSAYVALSRHRDGVQLHYGRDDFADLASLTRTLGRERAKDMASDYDHAPDSRDRDAEIRAFGDRRGLSGEIRVADAPERKGVELLGPRAGTMRQMGEDPRTREIGEGRGAGETKAAAERQPRRGMFDGLKLSAEPAKAAEPAPDTKDAAKEKAAPKRGMFDGLKLPQRTPAPTKDVPARAEQGHTHDFRRAVERASRSAEAVLQARASGGPVLEHQKVALERATEALDQIRPGASRDMASAMQRDPGLLREAAAGRSGPMVAAMAQEARVRADPNLRADRFVERWQGLKQERDRLYRAGDMAGREKAGKEMAGMAKSLERDPQVESILRDRTRELGLEMGMNRSRDMGRGDLGRQLTQDLGIGRDRGLSR
SIO_010081: SAMIE_RS22810
subclass of: SO_0000673
so part of: SAMIE_RS22810
location: 6160..9321
location: region:6160-9321:1
so has part: feature:6160-9321:1:exon

WP_066703141.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6160-9321:1:exon

SAMIE_RS22815
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22815
old locus tag: SAMIE_5000070
so part of: sequence
location: 9348..10046
location: region:9348-10046:1
so has part: feature:9348-10046:1:exon
subclass of: SO_0000010

position:9348:1
position: 9348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10046:1
position: 10046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9348-10046:1:exon

SAMIE_RS22815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22815
old locus tag: SAMIE_5000070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015449241.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6118 family protein
translation: MDEDSQERNDPALAFERLRGEVSLLRHAVEALTRARESIDIPDYEPTLERTEKVLGILAQQIDGVRKSPAMTLTPENMGGRLNASVAEATRELRDQVQSAKSALSSATFDLQNMVASARRGDEQNRWLYIAGGGGLALGLLLYAVLADPIARVTPDSWRWPERMATRTLGEPSLWDAGQRLMQTAAPESWGLIVAASPLADGNREAVQACREQAEKAKKPVRCTIEVKPQKF
SIO_010081: SAMIE_RS22815
subclass of: SO_0000673
so part of: SAMIE_RS22815
location: 9348..10046
location: region:9348-10046:1
so has part: feature:9348-10046:1:exon

WP_066703147.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9348-10046:1:exon

SAMIE_RS23935
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23935
pseudo: true
so part of: sequence
location: 10316..>10450
location: region:10316-10450:1
so has part: feature:10316-10450:1:exon
subclass of: SO_0000010

position:10316:1
position: 10316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10450:1
position: 10450
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10316-10450:1:exon

SAMIE_RS23935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23935
inference: COORDINATES: protein motif:HMM:NF019335.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: TonB-dependent receptor plug domain-containing protein
SIO_010081: SAMIE_RS23935
subclass of: SO_0000673
so part of: SAMIE_RS23935
location: 10316..>10450
location: region:10316-10450:1
so has part: feature:10316-10450:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10316-10450:1:exon

SAMIE_RS23940
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23940
pseudo: true
so part of: sequence
location: <10496..10900
location: region:10496-10900:1
so has part: feature:10496-10900:1:exon
subclass of: SO_0000010

position:10496:1
position: 10496
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:10900:1
position: 10900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10496-10900:1:exon

SAMIE_RS23940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010512303.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: SAMIE_RS23940
subclass of: SO_0000673
so part of: SAMIE_RS23940
location: <10496..10900
location: region:10496-10900:1
so has part: feature:10496-10900:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10496-10900:1:exon

SAMIE_RS22825
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22825
so part of: sequence
location: complement(11132..11686)
location: region:11132-11686:-1
so has part: feature:11132-11686:-1:exon
subclass of: SO_0000010

position:11132:-1
position: 11132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11686:-1
position: 11686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11132-11686:-1:exon

SAMIE_RS22825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010405541.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YgjV family protein
translation: MIAGAVGGVALLCVLGWPFFTDYRTVVKIQSVGAAAFALYFLMLGSPTAAIACLISCTQLIISASIPDRYIIVRLYGASLILLAFLAIITWHGPPSVFAFVGSLLGSVARLQKSTARMKGFFLVGAPFWLAHNLIVGATFALGTDIVSLSSNLVSLFKSSMRRRKELASRELCRTRGTSAIVTI
SIO_010081: SAMIE_RS22825
subclass of: SO_0000673
so part of: SAMIE_RS22825
location: complement(11132..11686)
location: region:11132-11686:-1
so has part: feature:11132-11686:-1:exon

WP_083952608.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11132-11686:-1:exon

SAMIE_RS22830
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
gene: fliE
locus tag: SAMIE_RS22830
old locus tag: SAMIE_5000090
so part of: sequence
location: complement(12002..12355)
location: region:12002-12355:-1
so has part: feature:12002-12355:-1:exon
subclass of: SO_0000010

position:12002:-1
position: 12002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12355:-1
position: 12355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12002-12355:-1:exon

SAMIE_RS22830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
gene: fliE
locus tag: SAMIE_RS22830
old locus tag: SAMIE_5000090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009820593.1
GO function: GO:0005198 - structural molecule activity [Evidence IEA]
GO process: GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: flagellar hook-basal body complex protein FliE
translation: MSDLSVANIMAMRATMLDRNASLRGLLPATSRSSPTDSEIGAKPLSGFASTLQTAIQNVNTTLEQEDVATEAYERGETTDIATVALLQARSSVNFEATLQVRNKLLTAYNDIMNMQI
SIO_010081: SAMIE_RS22830
subclass of: SO_0000673
so part of: SAMIE_RS22830
location: complement(12002..12355)
location: region:12002-12355:-1
so has part: feature:12002-12355:-1:exon

WP_066703150.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12002-12355:-1:exon

SAMIE_RS22835
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22835
old locus tag: SAMIE_5000100
so part of: sequence
location: complement(12522..12956)
location: region:12522-12956:-1
so has part: feature:12522-12956:-1:exon
subclass of: SO_0000010

position:12522:-1
position: 12522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12956:-1
position: 12956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12522-12956:-1:exon

SAMIE_RS22835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22835
old locus tag: SAMIE_5000100
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPVLLAVAPGYTAQAQSVSAAPAKTAKSATTFISDMLARGPAEVKPWPGFVRLSAVTAVSFKQSCQMVLALNDKSSHLVDLSRALSIRPSFSTNGPQSYVEITGGMTAFRGVDIYVGDNASVRRVGEALEFLRASCDKNSATGF
SIO_010081: SAMIE_RS22835
subclass of: SO_0000673
so part of: SAMIE_RS22835
location: complement(12522..12956)
location: region:12522-12956:-1
so has part: feature:12522-12956:-1:exon

WP_126516974.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12522-12956:-1:exon

SAMIE_RS22840
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22840
old locus tag: SAMIE_5000110
so part of: sequence
location: complement(12973..13425)
location: region:12973-13425:-1
so has part: feature:12973-13425:-1:exon
subclass of: SO_0000010

position:12973:-1
position: 12973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13425:-1
position: 13425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12973-13425:-1:exon

SAMIE_RS22840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22840
old locus tag: SAMIE_5000110
inference: COORDINATES: protein motif:HMM:NF012792.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MLERVWSEEPVVVELPEAIPSFEAYPDRRGSMFAAVSGFCKFGAIYVGEIVDDPGCTFASFELAVHEEWRNQGWGTRLVSRAEAWAASSGFSGMMISVQPDNAAALALYRRLAYRLTWYERNRNQSAGSMHVLVKTLYPASPTKSRYRHA
SIO_010081: SAMIE_RS22840
subclass of: SO_0000673
so part of: SAMIE_RS22840
location: complement(12973..13425)
location: region:12973-13425:-1
so has part: feature:12973-13425:-1:exon

WP_066703155.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12973-13425:-1:exon

SAMIE_RS22850
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22850
old locus tag: SAMIE_5000120
so part of: sequence
location: complement(14188..14919)
location: region:14188-14919:-1
so has part: feature:14188-14919:-1:exon
subclass of: SO_0000010

position:14188:-1
position: 14188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14919:-1
position: 14919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14188-14919:-1:exon

SAMIE_RS22850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22850
old locus tag: SAMIE_5000120
inference: COORDINATES: protein motif:HMM:NF015506.2
GO function: GO:0015291 - secondary active transmembrane transporter activity [Evidence IEA]
GO process: GO:0006810 - transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: energy transducer TonB
translation: MKVVDYGPGETHRDIAYEAQKPWGGEAPGRYQPSSQLRWISLSLIAVIHVAGFYALQHLNIDIAKRLPAPPLVVNLLPLDPPPPEPIALPTQKMVEKAPKPQQVVAPPPLVATPTAPTTIQMTPKTEPEPPAPVKTEETKSPPSRATNTLVNLNTRLLSAEPPRYPIESRRRRETGTVILMVVVDEEGRVSAISVAASSGADRLDKAALNAVRRWRWSPTMIDGRPSQVRGLVRIPFELKDRQ
SIO_010081: SAMIE_RS22850
subclass of: SO_0000673
so part of: SAMIE_RS22850
location: complement(14188..14919)
location: region:14188-14919:-1
so has part: feature:14188-14919:-1:exon

WP_066703158.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14188-14919:-1:exon

SAMIE_RS22855
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22855
old locus tag: SAMIE_5000130
so part of: sequence
location: complement(14924..15538)
location: region:14924-15538:-1
so has part: feature:14924-15538:-1:exon
subclass of: SO_0000010

position:14924:-1
position: 14924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15538:-1
position: 15538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14924-15538:-1:exon

SAMIE_RS22855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22855
old locus tag: SAMIE_5000130
inference: COORDINATES: protein motif:HMM:NF024734.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
translation: MRVFSLARLTSRERYVIGLLRGADPGSASGGLLALFDRLRTTAGELGFRPGPLTGAYASRQELCLLGCIAAMQRENPGVLLKISGAIRTPTLACARRLAFEGVHLNHASISRLSGMIDACKELSVSTAPLLQVRPRSQRRPLPPMPESLQEKALAFVCSRGIASSRDLAALGVSRQVVSLMFKQGLLVRVRTGVYRAASDLKRG
SIO_010081: SAMIE_RS22855
subclass of: SO_0000673
so part of: SAMIE_RS22855
location: complement(14924..15538)
location: region:14924-15538:-1
so has part: feature:14924-15538:-1:exon

WP_066703161.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14924-15538:-1:exon

SAMIE_RS22860
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22860
old locus tag: SAMIE_5000140
so part of: sequence
location: complement(15547..17745)
location: region:15547-17745:-1
so has part: feature:15547-17745:-1:exon
subclass of: SO_0000010

position:15547:-1
position: 15547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17745:-1
position: 17745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15547-17745:-1:exon

SAMIE_RS22860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22860
old locus tag: SAMIE_5000140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008830047.1
GO component: GO:0019867 - outer membrane [Evidence IEA]
GO function: GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO process: GO:0015891 - siderophore transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TonB-dependent siderophore receptor
translation: MKSGILTRVSLGSLSVALIAAASPALAQTQDKPTELGGVTVTDTVIDDQEAETSYKVSRSIGAMRTDTPLIDVPQSVTVVSAKQINDQAANSIGDAIRYVPGVFSAQGEGNRETLVFRGNSTTGDFFVDGIRDDVQTYRDLYNIERLEVFKGPNAMVFGRGGVGGLINRVTKVADWTPHRAFRLEGGSFEHKRAQFDLGTPLSDAIAVRLTGVYQDSGSYRDGVNYNRWGFNPTVTFKLGEATTITAGYEHFKDDRIADRGVPARPGASTTSIGGPLDTPRGQFFGDPAGSPTYTNTDAGTLYIEHRFSEAVTLRNRTRYADYAKLYRNVFPGAVNAAGTSVSISAYDNAMQRRNLINQTDLNAEFSTGSIKHTLLVGAELGRQETENFRREGFFPASPTDLVGTSSITVPIAASNIRRPDVIYRPAATSGNNAGVLKVAAGYVQDQIELSPMFQVILGVRYEYLNTKVTDRRPAAFVPATQQREFDVTDNLWSPRAALIFKPAENASIYAAYSRTYLPRGGDQFTSLSVSNQNLAPERYQNYEIGAKWDINPGFNVTAAVFRLDRSNVLALSDPNNAASPTIPVGRQRSEGVELSAQGTITDQLSVVGAYTYSDARFLDTVSGTVRAGNQLANVPKHSGSIWTRFNPGGGLSGAIGVIRQGRRFAGTDNIVAMPGYTRVDAAAFYDVSENLSVQVNIENLLNERYFLYANSNNNITPGSPRAFRISLNARF
SIO_010081: SAMIE_RS22860
subclass of: SO_0000673
so part of: SAMIE_RS22860
location: complement(15547..17745)
location: region:15547-17745:-1
so has part: feature:15547-17745:-1:exon

WP_066703163.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15547-17745:-1:exon

SAMIE_RS22865
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22865
old locus tag: SAMIE_5000150
so part of: sequence
location: complement(18044..18733)
location: region:18044-18733:-1
so has part: feature:18044-18733:-1:exon
subclass of: SO_0000010

position:18044:-1
position: 18044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18733:-1
position: 18733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18044-18733:-1:exon

SAMIE_RS22865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22865
old locus tag: SAMIE_5000150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013039427.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CDP-alcohol phosphatidyltransferase family protein
translation: MTNRPKRIQENLLAGPERRLLTWLCARMPRWMTPDILTATGLAGAALTGIGYAASNSNPFWLILAIAGFVVQWFGDSMDGSLARFRSIERPSYGYFVDHSCDGLTILFIMVGMGASPYVTMSIALFALAGYLLLAIHTFLIAHVIHEFPLSHFNIGPTELRIILIILSLSMLLTKNMASPPSARIYFDVFVVFCAGIMVFLFVTRTWSVSRKLAASDMVYGSAANFDRP
SIO_010081: SAMIE_RS22865
subclass of: SO_0000673
so part of: SAMIE_RS22865
location: complement(18044..18733)
location: region:18044-18733:-1
so has part: feature:18044-18733:-1:exon

WP_066703165.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18044-18733:-1:exon

SAMIE_RS22870
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22870
old locus tag: SAMIE_5000160
so part of: sequence
location: complement(18772..19764)
location: region:18772-19764:-1
so has part: feature:18772-19764:-1:exon
subclass of: SO_0000010

position:18772:-1
position: 18772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19764:-1
position: 19764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18772-19764:-1:exon

SAMIE_RS22870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22870
old locus tag: SAMIE_5000160
inference: COORDINATES: protein motif:HMM:NF016236.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VacJ family lipoprotein
translation: MRFANRTTTIVLSPFALVVGSAAVAQDGQPLPVVDFPVEAASSPQAADRKDARPLLAPNAVMISGLTVAALPSAIESPLDLPTGEVPQEIDPLPGDQSDIVVKARPRSAPGDPLQAVNVQTYAATQAVDKAVVAPVALTYQKVLPDPLRAGIRNFFNNLSEPVSFLNFMLQIKPGRAAETVARFAVNTTVGVGGVIDVARRKPFRLPRRPNGFANTLGFYGVKPGPFLFLPLIGPTTVRDLVGLSIDRMVLPSTIGAPFNQPTYTAPATIVGSLDYRAEFDTQLQAFKDSPDPYAASRAHYLAGRQAEIDALRGRVPSQPIDRRTLPVLP
SIO_010081: SAMIE_RS22870
subclass of: SO_0000673
so part of: SAMIE_RS22870
location: complement(18772..19764)
location: region:18772-19764:-1
so has part: feature:18772-19764:-1:exon

WP_083952610.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18772-19764:-1:exon

SAMIE_RS22875
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22875
old locus tag: SAMIE_5000170
so part of: sequence
location: 20121..20723
location: region:20121-20723:1
so has part: feature:20121-20723:1:exon
subclass of: SO_0000010

position:20121:1
position: 20121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20723:1
position: 20723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20121-20723:1:exon

SAMIE_RS22875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22875
old locus tag: SAMIE_5000170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013833496.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome c
translation: MAGLNIDTRRHLPSATFVGIAAALLAVFTGIFIYAGIYNIAGDDPHSKPVYWVLEKLRNQSIAARARGIAVPADLGSATRISTGAGLYTEMCSGCHLGPGVERSEMSQGLYPQAPELARDGQRLSPAEQFWIIKHGVKLSAMPAWGRTHPDPLIWDMVAFVRKLPGMPAEEYKRIIATAPADHDEMMKDMPGMAAKPGAK
SIO_010081: SAMIE_RS22875
subclass of: SO_0000673
so part of: SAMIE_RS22875
location: 20121..20723
location: region:20121-20723:1
so has part: feature:20121-20723:1:exon

WP_066703174.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20121-20723:1:exon

SAMIE_RS22880
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22880
old locus tag: SAMIE_5000180
so part of: sequence
location: 20984..22006
location: region:20984-22006:1
so has part: feature:20984-22006:1:exon
subclass of: SO_0000010

position:20984:1
position: 20984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22006:1
position: 22006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20984-22006:1:exon

SAMIE_RS22880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22880
old locus tag: SAMIE_5000180
inference: COORDINATES: protein motif:HMM:NF025736.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphatase PAP2 family protein
translation: MDNERARLPDGSCHSGRNWHLAPKTIPLSWLLGAVGFSLVAVVVMMVRLRIAVQVDARLGIFIVLAFSGTVTIRFRFRQPLSRQQRVWRDAAEYYGLFISICVIGALAAYPVAAISTGFADSALERVDHFLRFDWLAWYRFVVEHPAIQWPERAAYQSIFFTPAVLFAYYAWSARRAEARQFILSFWLAAFLTLLLFFHVPAKGPLAFLWHGPLPYVPESALYQADLIPALRSHAAKPIDLGALRGLVAAPSFHAASALLYIAAAWPLRPLRWPVTILNAAMLLATPVEGTHYLVDLIAGAAVALAALAITQLAARRFSPRLASRPQRWKTAQSTISSAE
SIO_010081: SAMIE_RS22880
subclass of: SO_0000673
so part of: SAMIE_RS22880
location: 20984..22006
location: region:20984-22006:1
so has part: feature:20984-22006:1:exon

WP_083952611.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20984-22006:1:exon

SAMIE_RS22885
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22885
old locus tag: SAMIE_5000190
so part of: sequence
location: complement(22094..22570)
location: region:22094-22570:-1
so has part: feature:22094-22570:-1:exon
subclass of: SO_0000010

position:22094:-1
position: 22094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22570:-1
position: 22570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22094-22570:-1:exon

SAMIE_RS22885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22885
old locus tag: SAMIE_5000190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013292904.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MgtC/SapB family protein
translation: MTEFATGDAPWWVDIGRISLAALLGAIIGWQREHRGREAGIRTYMATSLGACAFGLISGAIGDGGRISAGIVTGIGFIGAGIILRDSGRVTGLTTAATLWASAAVGLSTAYGIYHIAVMTAVLLLLILELHRMPGWTRLSHRSRQHAQQSTIQKDISE
SIO_010081: SAMIE_RS22885
subclass of: SO_0000673
so part of: SAMIE_RS22885
location: complement(22094..22570)
location: region:22094-22570:-1
so has part: feature:22094-22570:-1:exon

WP_066703180.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22094-22570:-1:exon

SAMIE_RS22890
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22890
so part of: sequence
location: complement(22634..22888)
location: region:22634-22888:-1
so has part: feature:22634-22888:-1:exon
subclass of: SO_0000010

position:22634:-1
position: 22634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22888:-1
position: 22888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22634-22888:-1:exon

SAMIE_RS22890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22890
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASTSALGRRRFLWHYHPCRPAQRRNPLLVTHPIKVLFWSAVINGIVSMPIMVAPMVVVSRRSGMGQFTAPKSFFFSDKLQRPS
SIO_010081: SAMIE_RS22890
subclass of: SO_0000673
so part of: SAMIE_RS22890
location: complement(22634..22888)
location: region:22634-22888:-1
so has part: feature:22634-22888:-1:exon

WP_232037502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22634-22888:-1:exon

SAMIE_RS22895
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22895
old locus tag: SAMIE_5000200
so part of: sequence
location: complement(23003..23737)
location: region:23003-23737:-1
so has part: feature:23003-23737:-1:exon
subclass of: SO_0000010

position:23003:-1
position: 23003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23737:-1
position: 23737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23003-23737:-1:exon

SAMIE_RS22895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22895
old locus tag: SAMIE_5000200
EC number: 2.1.-.-
inference: COORDINATES: protein motif:HMM:NF017238.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent methyltransferase
translation: MNEAMPFFMGLRDVGLFVRSARTDARLNQLRSTQGAAAALEAVYAANPDPWAAGSPHYRYQRRKYEVLASRLPPRRFHHALDLGCGLGLLSRHLAAHADSVLGVDVAPTAIARARVQHADVPNLAFETHNIMALPSSLDGRFDLIMIADVLYYLFPLDDAALKTLSRRIAQLLSPGGICMLVNHYFFAFDSESRRSRRIHDAFIWSSDFTLDSEYRRPFYLVTQLSGISERVTQPHKNNYATRP
SIO_010081: SAMIE_RS22895
subclass of: SO_0000673
so part of: SAMIE_RS22895
location: complement(23003..23737)
location: region:23003-23737:-1
so has part: feature:23003-23737:-1:exon

WP_083952612.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23003-23737:-1:exon

SAMIE_RS22900
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22900
so part of: sequence
location: complement(23821..24057)
location: region:23821-24057:-1
so has part: feature:23821-24057:-1:exon
subclass of: SO_0000010

position:23821:-1
position: 23821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24057:-1
position: 24057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23821-24057:-1:exon

SAMIE_RS22900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22900
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTNIKSIPVIAAAALVITAPATAQMNKSMPGMSNSSMSSQSAHRSGGASASTGMTGKGHKAKKHHPGKRHSQAAKTSK
SIO_010081: SAMIE_RS22900
subclass of: SO_0000673
so part of: SAMIE_RS22900
location: complement(23821..24057)
location: region:23821-24057:-1
so has part: feature:23821-24057:-1:exon

WP_124811074.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23821-24057:-1:exon

SAMIE_RS22905
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22905
old locus tag: SAMIE_5000210
so part of: sequence
location: complement(24131..24448)
location: region:24131-24448:-1
so has part: feature:24131-24448:-1:exon
subclass of: SO_0000010

position:24131:-1
position: 24131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24448:-1
position: 24448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24131-24448:-1:exon

SAMIE_RS22905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22905
old locus tag: SAMIE_5000210
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTSRSYGILACVALACAASLSGPAFADPGHGHDQHRGAPSGYYPGPNNSRIPYQTGYYQDAHNQRQQYTYPPDWRNYGHPQSWYQNHPSWHTFDHPDYYRRGERH
SIO_010081: SAMIE_RS22905
subclass of: SO_0000673
so part of: SAMIE_RS22905
location: complement(24131..24448)
location: region:24131-24448:-1
so has part: feature:24131-24448:-1:exon

WP_066703191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24131-24448:-1:exon

SAMIE_RS22910
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22910
old locus tag: SAMIE_5000220
so part of: sequence
location: 24781..25098
location: region:24781-25098:1
so has part: feature:24781-25098:1:exon
subclass of: SO_0000010

position:24781:1
position: 24781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25098:1
position: 25098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24781-25098:1:exon

SAMIE_RS22910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22910
old locus tag: SAMIE_5000220
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRMVLAAAALAATAFTAAAPSAAFAQDHYRGGHHARYDHGGDNQDYHSQPRWAGDPYGTWSYNQQWQNNGHARGHDRRGYTGHGYDGRQYDVHGYDQRHGGGHY
SIO_010081: SAMIE_RS22910
subclass of: SO_0000673
so part of: SAMIE_RS22910
location: 24781..25098
location: region:24781-25098:1
so has part: feature:24781-25098:1:exon

WP_066703194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24781-25098:1:exon

SAMIE_RS22915
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22915
old locus tag: SAMIE_5000230
so part of: sequence
location: 25202..25555
location: region:25202-25555:1
so has part: feature:25202-25555:1:exon
subclass of: SO_0000010

position:25202:1
position: 25202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25555:1
position: 25555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25202-25555:1:exon

SAMIE_RS22915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22915
old locus tag: SAMIE_5000230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010338848.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: flagellar hook-basal body complex protein FliE
translation: MSDISVANVMGMRSAILERNAALRNVAPSLPRATAGVGSVAGVGSVSFASTLDSAVEKVNATLEAEDVATEAYERGETNDIATVALMQARTSVSFEATLQVRNKLLSAYKDIMSMPV
SIO_010081: SAMIE_RS22915
subclass of: SO_0000673
so part of: SAMIE_RS22915
location: 25202..25555
location: region:25202-25555:1
so has part: feature:25202-25555:1:exon

WP_066703197.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25202-25555:1:exon

SAMIE_RS22920
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22920
old locus tag: SAMIE_5000240
so part of: sequence
location: complement(25581..25961)
location: region:25581-25961:-1
so has part: feature:25581-25961:-1:exon
subclass of: SO_0000010

position:25581:-1
position: 25581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25961:-1
position: 25961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25581-25961:-1:exon

SAMIE_RS22920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22920
old locus tag: SAMIE_5000240
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015864217.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLRNKLLALAAGAALSVIPSVAVAHGHHDHHSHHYRGHGHYSGAYYGGYGPYGYGPYTSYGGYYPYAGYPGHSHGYSVAIITGGHGHGGYGYHGYEHGWHDGGHGWGDHGYAGHGFDGGHGDHHDH
SIO_010081: SAMIE_RS22920
subclass of: SO_0000673
so part of: SAMIE_RS22920
location: complement(25581..25961)
location: region:25581-25961:-1
so has part: feature:25581-25961:-1:exon

WP_169800223.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25581-25961:-1:exon

SAMIE_RS22925
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22925
old locus tag: SAMIE_5000250
so part of: sequence
location: 26330..26653
location: region:26330-26653:1
so has part: feature:26330-26653:1:exon
subclass of: SO_0000010

position:26330:1
position: 26330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26653:1
position: 26653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26330-26653:1:exon

SAMIE_RS22925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22925
old locus tag: SAMIE_5000250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004213342.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRAVHESIEGPFAIGEDLAVYGHITQGATLREGVKLILHGTIAGDLIIEPGSRAIIHGTVAGRIYNHGGRVEMFGMADSVENLSPEAATIIDAAAHILRGRRVEHVR
SIO_010081: SAMIE_RS22925
subclass of: SO_0000673
so part of: SAMIE_RS22925
location: 26330..26653
location: region:26330-26653:1
so has part: feature:26330-26653:1:exon

WP_066703206.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26330-26653:1:exon

SAMIE_RS22930
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22930
old locus tag: SAMIE_5000260
so part of: sequence
location: 26650..27036
location: region:26650-27036:1
so has part: feature:26650-27036:1:exon
subclass of: SO_0000010

position:26650:1
position: 26650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27036:1
position: 27036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26650-27036:1:exon

SAMIE_RS22930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22930
old locus tag: SAMIE_5000260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008831331.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family transcriptional regulator
translation: MSEEQDDGAFADNYAERSQAKALREQARAGGLRFEAYLPPDMADWLLERVERGGFVDPSEAVFAIVQNYIEMEPHRDLRDELLCRMLESSFEDVKAGRVHDAEEVFDEILRKIAEPRPEAARWEKIQR
SIO_010081: SAMIE_RS22930
subclass of: SO_0000673
so part of: SAMIE_RS22930
location: 26650..27036
location: region:26650-27036:1
so has part: feature:26650-27036:1:exon

WP_066703209.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26650-27036:1:exon

SAMIE_RS22935
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22935
old locus tag: SAMIE_5000270
so part of: sequence
location: 27033..27989
location: region:27033-27989:1
so has part: feature:27033-27989:1:exon
subclass of: SO_0000010

position:27033:1
position: 27033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27989:1
position: 27989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27033-27989:1:exon

SAMIE_RS22935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22935
old locus tag: SAMIE_5000270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004212934.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MNQLAPLPSLALPALVAAADERARLRFLEFFAVTIRNPHTRRAYMRAAGDFLAWVAPRGVVSLAGVQPLHVAAWIEALGGELAPPSVKQQLAAVRSLFDWLVTGQVVPVNPAASVRGPAHSQRRGKTPVLAPDEARALLDRIDVATHAGLRDRALIGLMVYSFARVGAALAMKVEDVFMQNRRLWVRLHEKGGKRHEMPCHHNLEEYLLAYIDGCGLREDRKGPLFRTIGRRTKRLSDRPLPQANAFAMVRRRAAAAGIGTAIGNHSFRATGITTYLKNGGTLETAATMANHSSTRTTQLYDRRPDDVTLDEVERVLI
SIO_010081: SAMIE_RS22935
subclass of: SO_0000673
so part of: SAMIE_RS22935
location: 27033..27989
location: region:27033-27989:1
so has part: feature:27033-27989:1:exon

WP_066703213.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27033-27989:1:exon

SAMIE_RS22940
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22940
old locus tag: SAMIE_5000280
so part of: sequence
location: complement(27986..28606)
location: region:27986-28606:-1
so has part: feature:27986-28606:-1:exon
subclass of: SO_0000010

position:27986:-1
position: 27986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28606:-1
position: 28606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27986-28606:-1:exon

SAMIE_RS22940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22940
old locus tag: SAMIE_5000280
EC number: 3.1.3.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004213387.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histidine phosphatase family protein
translation: MRAIFIRHGESTGNAGVPCTDLATIELTERGHEQARAVAASWTEAPALIVTSPYTRTRQTAAPTIARFPGVPVEVWPIEEFTYLQPARWNGTRSAERMPHLERYWREADPDYCDGEGAESFGTLLRRCEAALTRLAAMPPLSLVYVFGHGQFIQAARAIVADVDLDARAKMLGFWRKGEPPAIGNAQRIGFHWEAGRWACAPPLAA
SIO_010081: SAMIE_RS22940
subclass of: SO_0000673
so part of: SAMIE_RS22940
location: complement(27986..28606)
location: region:27986-28606:-1
so has part: feature:27986-28606:-1:exon

WP_066703216.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27986-28606:-1:exon

SAMIE_RS22945
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22945
old locus tag: SAMIE_5000290
so part of: sequence
location: 28803..31712
location: region:28803-31712:1
so has part: feature:28803-31712:1:exon
subclass of: SO_0000010

position:28803:1
position: 28803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31712:1
position: 31712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28803-31712:1:exon

SAMIE_RS22945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22945
old locus tag: SAMIE_5000290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006961814.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MSLGVSSGDLIGSWSLSFSDIAFVTGKAETARLGLAVQLRFFAGHGFFVPDHASIPSDGVLYLAEQLGLDAKSVNHYDFSGRTARRHCAEILRHLGFRRMTQTDRRALSRWISDDLCAGGQPINAMLEHVFLWCRDRRIYGPSRKELERLVRSQRHLYLEALLARVRDRLAPDAVALLEASLADPDGPTGFNTMKGDAGQATLENILGVTAKLAFIQRLALPRDFLSVTGKAWVDQIVRRVAGEKASEMRRHVPARQLGLYAVYLMAREAQLTDAMVDLLIETVHKIGSRSKRKVVGDIAKDIERVYGKERLLVEIASASIDDPSGRICDVIFPIAGKDKLAAIIKESQAKGALDRRIYKVMRRSWANHYRRMLPSLLSALEFRSNNAVWRPVLAALDWIRSKVDDGCRYVPPHAVPVDEVIPARWRSSVIDEEGRVNRISYELCVLAQLRDRIRSKEIWVVGADRYRNPDDDLPKDFDARREAYYTGLNLTADARAFSSAIREELAQELLLLNANIPRNDKVRLLWRGENRISLTPFKPLPEPRGLASIKTEIGQRWPMTGLLDVLKEAALDTGLLEAFETSASRVALPKTALDQRLLLCLYGLGTNAGLKRIAGATPDVSYEELLHVHRRFVHAAALKEACARVANATLAIRNAAVWGDAGTACASDSTKFGAWDRNLMTEWHARYGGRGVMIYWHVERRATCVYSQLKRCSSSEVASMIEGVLRHCTDMEIQRQYVDSHGQSAVGFAFCRLLGFELAPRLKAIARQKLALPDVGMRTRLPHLQPILSSPINWDEIEQQYDEMVKYAAAMQTKTADPEAILRRFSRSEVMHPTYKALSELGRAVKTIFLCRYLREESFRREIHEGLNVVENWNSANGFVFFGKGGEIATNRIDEQQLSVLALHLLQASLVYVNTRMLQSVLVEPKWTGRMTPDDYRGLTPLIYSHVNPYGRFDLDLNSRIDFGRLAA
SIO_010081: SAMIE_RS22945
subclass of: SO_0000673
so part of: SAMIE_RS22945
location: 28803..31712
location: region:28803-31712:1
so has part: feature:28803-31712:1:exon

WP_006961814.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28803-31712:1:exon

SAMIE_RS22950
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22950
old locus tag: SAMIE_5000300
so part of: sequence
location: 31855..32721
location: region:31855-32721:1
so has part: feature:31855-32721:1:exon
subclass of: SO_0000010

position:31855:1
position: 31855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32721:1
position: 32721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31855-32721:1:exon

SAMIE_RS22950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22950
old locus tag: SAMIE_5000300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006953933.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTRVGYARVSTIDQDLDIQVARLKAAGCEILRSETGSGASRTGRTELETIMQFLRADDELVVLRLDRLGRSTRDVLNLVHELDQKGASLRVLEPEVTTAGSMGRMVITILGMVADMELTFIKDRQRAGIEAARAEGVYKGRKKNIDDDEIRRRITAGASKASVARDLKISRMTVYRALDVIPSRIGLPEKPPSVTIALHLTIENFNKHGRGRKPARERIEAMLERDYQMQKTGNCDYTLTVAYDQGADGVSLDDEIASLQTEMFNIAESYRCSIETDVYEIGGQERAW
SIO_010081: SAMIE_RS22950
subclass of: SO_0000673
so part of: SAMIE_RS22950
location: 31855..32721
location: region:31855-32721:1
so has part: feature:31855-32721:1:exon

WP_006961816.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31855-32721:1:exon

SAMIE_RS22955
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22955
old locus tag: SAMIE_5000310
so part of: sequence
location: complement(32688..33023)
location: region:32688-33023:-1
so has part: feature:32688-33023:-1:exon
subclass of: SO_0000010

position:32688:-1
position: 32688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33023:-1
position: 33023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32688-33023:-1:exon

SAMIE_RS22955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22955
old locus tag: SAMIE_5000310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014160816.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MKVTLSTRARRDLEGIRLYIEKDNPTRAISFVDELRDAARRIGDMSRAFPLVPRYEQHGIRRRSYNGYGILYSVQPDRVLAQSARSCDFGHVEEQRLNMAIYQARSCPPIS
SIO_010081: SAMIE_RS22955
subclass of: SO_0000673
so part of: SAMIE_RS22955
location: complement(32688..33023)
location: region:32688-33023:-1
so has part: feature:32688-33023:-1:exon

WP_126516976.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32688-33023:-1:exon

SAMIE_RS22960
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22960
so part of: sequence
location: complement(33020..33301)
location: region:33020-33301:-1
so has part: feature:33020-33301:-1:exon
subclass of: SO_0000010

position:33020:-1
position: 33020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33301:-1
position: 33301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33020-33301:-1:exon

SAMIE_RS22960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006954458.1
GO process: GO:0051983 - regulation of chromosome segregation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system ParD family antitoxin
translation: MATMNVSLPDPLRDYVQNRIDSGQYASVSDYVRDLIRRDQSAIVDEERWLKELDASIDESLQEMQAGGGHDLDEVCDAIIADIQKTASGEARQ
SIO_010081: SAMIE_RS22960
subclass of: SO_0000673
so part of: SAMIE_RS22960
location: complement(33020..33301)
location: region:33020-33301:-1
so has part: feature:33020-33301:-1:exon

WP_162849122.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33020-33301:-1:exon

SAMIE_RS22965
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22965
old locus tag: SAMIE_5000320
so part of: sequence
location: complement(33560..34888)
location: region:33560-34888:-1
so has part: feature:33560-34888:-1:exon
subclass of: SO_0000010

position:33560:-1
position: 33560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34888:-1
position: 34888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33560-34888:-1:exon

SAMIE_RS22965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22965
old locus tag: SAMIE_5000320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007683476.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKFATSPAWGEHLGEALGDHLGLAMEEFDFEADELADIVGDHWAGVLWGCAFEDLLTRTIQPDRNIVDDYIRRRGWNESGPTKIYLRALRSSVMSLHEVSEVEPGSGFLVRDLIRGGEPLRVSERSASQTLKQWDRIGARVVQVGGKHLLSGGVLSFTMEAAEALVADLRRSKGKRSPRTALNLDADDLAALPALISTAWLFDVVPKTMGPAPIPTLHNIDGEEVMFHRVRFPFARGVTQALVGERLDTVPALQRETTHFWNWLGEKPNGKAKSTGRMAWGVTMADGTPVLGNVELKGRALMLAVTSAERAKRGTALINDALAGLVGSPLTTIETVEQAMAARAEGLTSSEPAPAIAPEVATPLIHAMLDRQYRATLDEPVGMLGDITPRAAVQTAAGRHRVAGWLKHLENRSSSQLDANDPMATYDFTWIWRELGIENLRK
SIO_010081: SAMIE_RS22965
subclass of: SO_0000673
so part of: SAMIE_RS22965
location: complement(33560..34888)
location: region:33560-34888:-1
so has part: feature:33560-34888:-1:exon

WP_020817906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33560-34888:-1:exon

SAMIE_RS22970
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22970
old locus tag: SAMIE_5000330
so part of: sequence
location: complement(34915..35520)
location: region:34915-35520:-1
so has part: feature:34915-35520:-1:exon
subclass of: SO_0000010

position:34915:-1
position: 34915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35520:-1
position: 35520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34915-35520:-1:exon

SAMIE_RS22970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22970
old locus tag: SAMIE_5000330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011950671.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTREPYLIGYARVSKGDDQSNAAQRRALDAAGCKRVFEETASGGRWDRPKLLEMIGQLRDGDVVVVWKLDRLSRSLKDMLHIMERIELAGAGFRSLTEAIDTTTAAGRMMMQMVGSFAEFERAMIRERTSAGLAQARAEGRIGGRRPKLGDKQRREIAESVTSGRKSGAEMARLYGVSEPTVSRIVAAHRQQFSQQQREQA
SIO_010081: SAMIE_RS22970
subclass of: SO_0000673
so part of: SAMIE_RS22970
location: complement(34915..35520)
location: region:34915-35520:-1
so has part: feature:34915-35520:-1:exon

WP_026109404.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34915-35520:-1:exon

SAMIE_RS22975
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22975
old locus tag: SAMIE_5000340
so part of: sequence
location: 35650..38601
location: region:35650-38601:1
so has part: feature:35650-38601:1:exon
subclass of: SO_0000010

position:35650:1
position: 35650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38601:1
position: 38601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35650-38601:1:exon

SAMIE_RS22975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22975
old locus tag: SAMIE_5000340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011950672.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MPARIPMTQRQRAALLALPDSEAAVVRHHGLDAEDLAAIGFARTPATRLSYALQLCCLRYPGRHLRTGELLPAIMLDHIAEQVGVDAGVVADFARRAPTRYDQLAAIKARFGFTDLSRPARGIMMTWLETEAMAIVDGRILLDRLLDELRTRRIVIPGISVVERMAAEAMLRTETDLVAAVDAKLDADMRQRLDMLIDEKVHDRQSRLSWLREPEPRVASASLAEILEKVAIIHRTGISSIPVDPLHEPRLTQFAREGVRYTAQAFQQMRVSRRRVILLATLREMEATLTDAAIAMFSALMGRAHLRARKRLEQRVAISGREGRDRLMRIATVLETVSQAARAGGDIGAALRDIVPLDMLDADAAIIRRTAAPHRDDVLSEIAAEYRTFKRTGPLFLQALDFHGRAGTAALRDAMAILSNLDGDWRKPLPADVPLGHVERRWHRHVVVAGKIDRTHWEMATYGALTNALASGDIWVPRSRLHRSLDVLLAPLSGAALQPPFSLGNPHAWLDQRAAQLDSALRDVAHNLAGRDAALFAGERLRFPKELKDDDARHDEGRRLTLACYDMLPATRITDVLSQVERWTGFTRHFGHVSTGLPPGDEQAFLATLIAEATNLGLSRMAEVCGAGSRRALLRMQTWHMREETFRAALACLTDAIHAEPIAAWFGQGHRASADGQAFYLGGPGEAGGAVNAHYGRDPVVKIYTTITDRYAPLHQTVIAGTAGEAIHALDGLLGHDSNADLTALHVDGGGVSDIVFATMHLLGLDFEPRIPRLSDRRLYAFEPSKRYGRLAPLFGHRLNRDLIVSHWPDIERVIGAIRHRTVTPSLILKKLSAYRQQNSLAAALREIGRIERTLFTLRWFEDPALRRTVTAELNKGEARNSLARAVAFHRLGRFRDRGLENQQTRAAALNLVTAAIILFNCRYLGRAVDEMRRRGSPIDPAMLSRLSPLGWDRINLTGDYVWSDHLDLDANGLMPLLIKPLP
SIO_010081: SAMIE_RS22975
subclass of: SO_0000673
so part of: SAMIE_RS22975
location: 35650..38601
location: region:35650-38601:1
so has part: feature:35650-38601:1:exon

WP_228168062.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35650-38601:1:exon

SAMIE_RS22980
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22980
old locus tag: SAMIE_5000350
so part of: sequence
location: 38917..39549
location: region:38917-39549:1
so has part: feature:38917-39549:1:exon
subclass of: SO_0000010

position:38917:1
position: 38917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39549:1
position: 39549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38917-39549:1:exon

SAMIE_RS22980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22980
old locus tag: SAMIE_5000350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013038655.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SprT-like domain-containing protein
translation: MTQDNRESWLNRVAAGMAPLFEVLDAPLPARVRVAIGFTSAGRKGKAIGECWDNRLSADGHFEIFIRPDLAHAPDAMPAQIAAILAHELIHAAVGIPAGHGKAFKRIALGLGLVGPMRATTPGEAFLSAIAPILDAVGPLPHARLDTDGESTAPKKQKTRMLKCECATCGYTVRTARKWLELAGAPLCPIEDHGRMEHEPLDDDDSEPEE
SIO_010081: SAMIE_RS22980
subclass of: SO_0000673
so part of: SAMIE_RS22980
location: 38917..39549
location: region:38917-39549:1
so has part: feature:38917-39549:1:exon

WP_066703224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38917-39549:1:exon