Sphingobium amiense strain DSM 16289 plasmid pSAMIE_4, complete sequence.
type: Entry
definition: Sphingobium amiense strain DSM 16289 plasmid pSAMIE_4, complete sequence.
sequence version: NZ_AP018667.1
sequence date: 2022-12-27
sequence: sequence
division: CON
label: NZ_AP018667.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00116355
keyword: RefSeq
source: Sphingobium amiense
organism: Sphingobium amiense
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP018667.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.10.1; Unicycler v. 0.4.0; Canu\n v. 1.5\nGenome Coverage :: 365x\nSequencing Technology :: PacBio RS II; Hiseq 2500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 02:02:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,668\nCDSs (total) :: 4,607\nGenes (coding) :: 4,534\nCDSs (with protein) :: 4,534\nGenes (RNA) :: 61\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 73\nCDSs (without protein) :: 73\nPseudo Genes (ambiguous residues) :: 0 of 73\nPseudo Genes (frameshifted) :: 17 of 73\nPseudo Genes (incomplete) :: 60 of 73\nPseudo Genes (internal stop) :: 7 of 73\nPseudo Genes (multiple problems) :: 9 of 73\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 55670
topology: circular
so has quality: SO_0000988
location: 1..55670
location: region:1-55670:1
RO_0002162: 135719

NZ_AP018667
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00116355
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of the Nonylphenol-Degrading Bacterium Sphingobium amiense DSM 16289T
author: Ootsuka, M.
author: Nishizawa, T.
author: Ohta, H.
journal: Unpublished

2
title: Direct Submission
author: Ootsuka, M.
author: Nishizawa, T.
author: Ohta, H.
journal: Submitted (07-MAY-2018) Contact:Tomoyasu Nishizawa Ibaraki University College of Agriculture, Department of Bioresource sience; 3-21-1 Chuou, Ami, Ibaraki 300-0393, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55670:1
position: 55670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-55670:1:source
so part of: sequence
organism: Sphingobium amiense
mol type: genomic DNA
strain: DSM 16289
culture collection: DSM:16289
type material: type strain of Sphingobium amiense
plasmid: pSAMIE_4

135719
type: Taxonomy
SIO_000068: taxonomy

SAMIE_RS23595
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23595
old locus tag: SAMIE_4000010
so part of: sequence
location: 1..714
location: region:1-714:1
so has part: feature:1-714:1:exon
subclass of: SO_0000010

position:714:1
position: 714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-714:1:exon

SAMIE_RS23595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23595
old locus tag: SAMIE_4000010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008827689.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein A
translation: MQTVFEALGGATRGRRPGRQTGQRVHRYSRTEEGREGRFWQPFNPKNVARFMQAAEKYDRVKRLAHRRERNNRENGAIGHVGLEVLRELLRLIDYKTGRLDPAIATLALRIGRSIAAVVDALKRLKAHGFLDWLRRYVPTGNAGLRGPQVKQTSNAYRLMLPPQVERGMTAPPPEDDSDRRRVAAEEGRAMIAVLPLDEQPAQLIDDPGLAAILARLGRGIMDQERDSERQNESQQS
SIO_010081: SAMIE_RS23595
subclass of: SO_0000673
so part of: SAMIE_RS23595
location: 1..714
location: region:1-714:1
so has part: feature:1-714:1:exon

WP_179955656.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-714:1:exon

SAMIE_RS22475
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22475
old locus tag: SAMIE_4000020
so part of: sequence
location: complement(981..2624)
location: region:981-2624:-1
so has part: feature:981-2624:-1:exon
subclass of: SO_0000010

position:981:-1
position: 981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2624:-1
position: 2624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:981-2624:-1:exon

SAMIE_RS22475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22475
old locus tag: SAMIE_4000020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015472929.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MGLARATRNLARTARANPMWALFGILLAPFRFARHIIGVVLFTMVLFVALFLLLMLAIWYFGLDKNGAVAQLGVFGISGAVVLVMVWMFVLPLLRRFDYGDSADTHGSARFATAGEAQALNDDHGLLIGRDVKTGKPMRYAGPAHLLTIAPTRTGKGVGTIIPNLLEYPFAVVCIDPKGENARIAARQRGKFGAVHILDPFSVTGLSSAAFNPLDRIDPHGLDLADDCMTLADALVHDAPGEAGDAHWNEEAKALIAGILLHIVTTEPPATRTLETLRDRLTLAPAALTAQLAAMQAQGGLVARAANRQLGKSDREAAGVLSAAQRHTHFLDSPRMATVLGHSDFTFAGLKAAPATVFLVLPPDRLASYARWLRLMVAQALTELARAPGRPPWPVLFLLDEFAALGRLEPVERAMGLMAGYGVQLWPILQDVHQLRALYGQRAGTFLSNAGVLQVFGVNDQDSAKLVSDLAGQETVVFETMSRALDAEESGLSYGQQHVSRALLTPDEVRTLRPDRQLLFLAGQRPIIAGKLRYYDNREFAGRFDPA
SIO_010081: SAMIE_RS22475
subclass of: SO_0000673
so part of: SAMIE_RS22475
location: complement(981..2624)
location: region:981-2624:-1
so has part: feature:981-2624:-1:exon

WP_066704221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:981-2624:-1:exon

SAMIE_RS22480
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
gene: istB
locus tag: SAMIE_RS22480
old locus tag: SAMIE_4000030
pseudo: true
so part of: sequence
location: complement(2791..>3432)
location: region:2791-3432:-1
so has part: feature:2791-3432:-1:exon
subclass of: SO_0000010

position:2791:-1
position: 2791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3432:-1
position: 3432
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2791-3432:-1:exon

SAMIE_RS22480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
gene: istB
locus tag: SAMIE_RS22480
old locus tag: SAMIE_4000030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000983249.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS21-like element helper ATPase IstB
SIO_010081: SAMIE_RS22480
subclass of: SO_0000673
so part of: SAMIE_RS22480
location: complement(2791..>3432)
location: region:2791-3432:-1
so has part: feature:2791-3432:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2791-3432:-1:exon

SAMIE_RS22485
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22485
old locus tag: SAMIE_4000040
so part of: sequence
location: 3555..6464
location: region:3555-6464:1
so has part: feature:3555-6464:1:exon
subclass of: SO_0000010

position:3555:1
position: 3555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6464:1
position: 6464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3555-6464:1:exon

SAMIE_RS22485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22485
old locus tag: SAMIE_4000040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006961814.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MSLGVSSGDLIGSWSLSFSDIAFVTGKAETARLGLAVQLRFFAGHGFFVPDHASIPSDGVLYLAEQLGLDAKSVNHYDFSGRTARRHCAEILRHLGFRRMTQTDRRALSRWISDDLCAGGQPINAMLEHVFLWCRDRRIYGPSRKELERLVRSQRHLYLEALLARVRDRLAPDAVALLEASLADPDGPTGFNTMKGDAGQATLENILGVTAKLAFIQRLALPRDFLSVTGKAWVDQIVRRVAGEKASEMRRHVPARQLGLYAVYLMAREAQLTDAMVDLLIETVHKIGSRSKRKVVGDIAKDIERVYGKERLLVEIASASIDDPSGRICDVIFPIAGKDKLAAIIKESQAKGALDRRIYKVMRRSWANHYRRMLPSLLSALEFRSNNAVWRPVLAALDWIRSKVDDGCRYVPPHAVPVDEVIPARWRSSVIDEEGRVNRISYELCVLAQLRDRIRSKEIWVVGADRYRNPDDDLPKDFDARREAYYTGLNLTADARAFSSAIREELAQELLLLNANIPRNDKVRLLWRGENRISLTPFKPLPEPRGLASIKTEIGQRWPMTGLLDVLKEAALDTGLLEAFETSASRVALPKTALDQRLLLCLYGLGTNAGLKRIAGATPDVSYEELLHVHRRFVHAAALKEACARVANATLAIRNAAVWGDAGTACASDSTKFGAWDRNLMTEWHARYGGRGVMIYWHVERRATCVYSQLKRCSSSEVASMIEGVLRHCTDMEIQRQYVDSHGQSAVGFAFCRLLGFELAPRLKAIARQKLALPDVGMRTRLPHLQPILSSPINWDEIEQQYDEMVKYAAAMQTKTADPEAILRRFSRSEVMHPTYKALSELGRAVKTIFLCRYLREESFRREIHEGLNVVENWNSANGFVFFGKGGEIATNRIDEQQLSVLALHLLQASLVYVNTRMLQSVLVEPKWTGRMTPDDYRGLTPLIYSHVNPYGRFDLDLNSRIDFGRLAA
SIO_010081: SAMIE_RS22485
subclass of: SO_0000673
so part of: SAMIE_RS22485
location: 3555..6464
location: region:3555-6464:1
so has part: feature:3555-6464:1:exon

WP_006961814.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3555-6464:1:exon

SAMIE_RS22490
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22490
old locus tag: SAMIE_4000050
so part of: sequence
location: 6607..7473
location: region:6607-7473:1
so has part: feature:6607-7473:1:exon
subclass of: SO_0000010

position:6607:1
position: 6607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7473:1
position: 7473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6607-7473:1:exon

SAMIE_RS22490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22490
old locus tag: SAMIE_4000050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006953933.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTRVGYARVSTIDQDLDIQVARLKAAGCEILRSETGSGASRTGRTELETIMQFLRADDELVVLRLDRLGRSTRDVLNLVHELDQKGASLRVLEPEVTTAGSMGRMVITILGMVADMELTFIKDRQRAGIEAARAEGVYKGRKKNIDDDEIRRRITAGASKASVARDLKISRMTVYRALDVIPSRIGLPEKPPSVTIALHLTIENFNKHGRGRKPARERIEAMLERDYQMQKTGNCDYTLTVAYDQGADGVSLDDEIASLQTEMFNIAESYRCSIETDVYEIGGQERAW
SIO_010081: SAMIE_RS22490
subclass of: SO_0000673
so part of: SAMIE_RS22490
location: 6607..7473
location: region:6607-7473:1
so has part: feature:6607-7473:1:exon

WP_006961816.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6607-7473:1:exon

SAMIE_RS22495
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22495
pseudo: true
so part of: sequence
location: complement(<7530..7682)
location: region:7530-7682:-1
so has part: feature:7530-7682:-1:exon
subclass of: SO_0000010

position:7530:-1
position: 7530
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:7682:-1
position: 7682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7530-7682:-1:exon

SAMIE_RS22495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008604018.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ATP-binding protein
SIO_010081: SAMIE_RS22495
subclass of: SO_0000673
so part of: SAMIE_RS22495
location: complement(<7530..7682)
location: region:7530-7682:-1
so has part: feature:7530-7682:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7530-7682:-1:exon

SAMIE_RS22500
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
gene: istA
locus tag: SAMIE_RS22500
old locus tag: SAMIE_4000060
so part of: sequence
location: complement(7672..9195)
location: region:7672-9195:-1
so has part: feature:7672-9195:-1:exon
subclass of: SO_0000010

position:7672:-1
position: 7672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9195:-1
position: 9195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7672-9195:-1:exon

SAMIE_RS22500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
gene: istA
locus tag: SAMIE_RS22500
old locus tag: SAMIE_4000060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_032490240.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21 family transposase
translation: MALLSVIRRWHYRDHLSIREIAKRTGLSRNTVRKYLRSDTVEPQFKVPERPSKLDPFVDRLTVWLRREMGRSRKQKRTIKQLHADLVSLGFDGSYGRVAAFARAWRDDYRRQQQMSGKGTFVPLSFAPGEAFQFDWSEDWAIIDGVRTKLQVAHFKLSYSRAFFVRAYLLQTHEMLFDAHNHAFRVLGGVPRRGIYDNMRTAVDKVGRGKDRTVNARFLTMVSHYLFEAEFCNPAAGWEKGQVEKNVQDARHRLWQPVPQTETLDALNSWLEDRCKALWQDIPHGIEPGSVADAWAEEVASLMPMGRPFDGFVEYGKRVSPTCLVHLERNRYSVPASFANRPVSVRLYPDRFLVVAEGQLLCEHQRIIERSHDGPGRTVYDWRHYLAVVQRKPGALRNGAPFLEMPDAFQRLQRHLLRAPGGDREMVEILALVLHHDEQVVLRAVTMALESGVPTKTHILNLLHRLIDGKPLTTPPITAPQALRLVSEPLANVERYDALRGENRHAS
SIO_010081: SAMIE_RS22500
subclass of: SO_0000673
so part of: SAMIE_RS22500
location: complement(7672..9195)
location: region:7672-9195:-1
so has part: feature:7672-9195:-1:exon

WP_126516717.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7672-9195:-1:exon

SAMIE_RS22505
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22505
old locus tag: SAMIE_4000070
so part of: sequence
location: 9501..10751
location: region:9501-10751:1
so has part: feature:9501-10751:1:exon
subclass of: SO_0000010

position:9501:1
position: 9501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10751:1
position: 10751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9501-10751:1:exon

SAMIE_RS22505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22505
old locus tag: SAMIE_4000070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004863096.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MSASQEIKSWDTDYEWKVVLLLALGFGLVGLDRWILAPLYPFIAADLGLAEGDIGYLAGVLGIVWGLFAIFAGRLSDRIGHRKVLIPSIILFSLMSGFSGLAHSLTFLVVIRSLMGATEGAFCPTSFAATAAASKPERRGFNLGLQQSGFALFGFALAPMVATQLLTVVPSWREVFWVVAIPGFLVALLLYFVLRDPGNAPAAGLVGIEEAAPVKWMEALKSRNIIVCMMALICAMACVFVLGAMVPIYLMNVIRLSPQEMGIVTSAMGFGGFIGQFSWPGLSDKFGRKPLAIIGFLAAAVSVYWFSQIGADTTLLFVALFITSFFCLGNVALITGPIATESAPAGLVAASIGIVVGAGEIFGGGVAPAIAGFVANNFGLPSVLTVALTGVSIGVFVCLLLKETAPLRVGNRPATT
SIO_010081: SAMIE_RS22505
subclass of: SO_0000673
so part of: SAMIE_RS22505
location: 9501..10751
location: region:9501-10751:1
so has part: feature:9501-10751:1:exon

WP_096362255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9501-10751:1:exon

SAMIE_RS22510
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22510
old locus tag: SAMIE_4000080
so part of: sequence
location: complement(11122..11727)
location: region:11122-11727:-1
so has part: feature:11122-11727:-1:exon
subclass of: SO_0000010

position:11122:-1
position: 11122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11727:-1
position: 11727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11122-11727:-1:exon

SAMIE_RS22510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22510
old locus tag: SAMIE_4000080
inference: COORDINATES: protein motif:HMM:NF012656.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acyl-CoA dehydrogenase
translation: MLVPTDAVGITRAALSHRNMVYTHSFDVHFDDVRVSAENILGGPQAWNEGWRVLAGQSLDVEKVEVAAITYGLAQAAVEEAWQYAQERQQFGRPISGHQAVRHELVDARTRLQACRHMLYHAAWLVSQGRPASVETSMAKLFVADVSVQIGLACQRVLGAYGLSDEFDMPQIVIDLIGMPIIGGSSNMQKNNIAKRLGLAE
SIO_010081: SAMIE_RS22510
subclass of: SO_0000673
so part of: SAMIE_RS22510
location: complement(11122..11727)
location: region:11122-11727:-1
so has part: feature:11122-11727:-1:exon

WP_232037500.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11122-11727:-1:exon

SAMIE_RS22515
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22515
so part of: sequence
location: complement(11811..12095)
location: region:11811-12095:-1
so has part: feature:11811-12095:-1:exon
subclass of: SO_0000010

position:11811:-1
position: 11811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12095:-1
position: 12095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11811-12095:-1:exon

SAMIE_RS22515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010189087.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: XRE family transcriptional regulator
translation: MAENKHRGPTLDSFLEEEGVLAEFQAKAIKEVIAWQLSEAMRERKLSKKRLALLMHTSRTQVDRMLDPADGNVTIETLQRAAAVVGRRVELALI
SIO_010081: SAMIE_RS22515
subclass of: SO_0000673
so part of: SAMIE_RS22515
location: complement(11811..12095)
location: region:11811-12095:-1
so has part: feature:11811-12095:-1:exon

WP_066520978.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11811-12095:-1:exon

SAMIE_RS22520
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22520
old locus tag: SAMIE_4000090
so part of: sequence
location: complement(12088..12444)
location: region:12088-12444:-1
so has part: feature:12088-12444:-1:exon
subclass of: SO_0000010

position:12088:-1
position: 12088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12444:-1
position: 12444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12088-12444:-1:exon

SAMIE_RS22520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22520
old locus tag: SAMIE_4000090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013786598.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MGSGTAQRIELVFYQTDAGNVPVRDWLLGLPEANRREIGQDLQRVQFRWPVGMPLVRPMGKGLFEVRTSLPDGTIARVLFCFHQGELYALHGFIKKSQTTPAADLELARKRQKEVENG
SIO_010081: SAMIE_RS22520
subclass of: SO_0000673
so part of: SAMIE_RS22520
location: complement(12088..12444)
location: region:12088-12444:-1
so has part: feature:12088-12444:-1:exon

WP_066520988.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12088-12444:-1:exon

SAMIE_RS22525
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22525
old locus tag: SAMIE_4000100
so part of: sequence
location: complement(12476..13078)
location: region:12476-13078:-1
so has part: feature:12476-13078:-1:exon
subclass of: SO_0000010

position:12476:-1
position: 12476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13078:-1
position: 13078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12476-13078:-1:exon

SAMIE_RS22525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22525
old locus tag: SAMIE_4000100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007568958.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTNTLIGYARCSTDKQDLAAQRDALVQLGVAPDRIYTDHGFTGTNRARPGLDQALAAVRNGDTLVVPKLDRLARSVPDARAIGDQLTARGVRLQLSASVHDPGDPMGKLFFNILATFAEFEADLIRMRTREGMAVARARGKLRGKKPKLSDRQQKELRRMYDTGDYSISDLAELFSISRPTVYRTLGRQPTVTAVTAEPA
SIO_010081: SAMIE_RS22525
subclass of: SO_0000673
so part of: SAMIE_RS22525
location: complement(12476..13078)
location: region:12476-13078:-1
so has part: feature:12476-13078:-1:exon

WP_066520976.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12476-13078:-1:exon

SAMIE_RS22530
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22530
old locus tag: SAMIE_4000110
so part of: sequence
location: 13279..16248
location: region:13279-16248:1
so has part: feature:13279-16248:1:exon
subclass of: SO_0000010

position:13279:1
position: 13279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16248:1
position: 16248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13279-16248:1:exon

SAMIE_RS22530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22530
old locus tag: SAMIE_4000110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015449233.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MARRRLLTDHERRCLFEPPTDDIAIIANYTLSAEDIEVIGRRYGAPNRLGLASHIALMRHLGFGLPGNNAVPTPVLHYLAAQLHVDPAALTSYGQRSQTRNDHAEIVARYLGLHPFRRMDIPFALELAEAAARHTDRGEPIVRALIEGLKDKRFILPASDTLERAGLAGRARARKAAAAALIETLDSSEMAHLDDLLVNNSDFGMTPLAWLRAYDEAPNTANINGLLERLRFVRNIGIDPAVSSEIPEFRFAQFVREGGVAPAFLLSDYSLNRRRATLVAAVIDLEARLADGAIQMFDRLIGGMFTRARRGRERRYQDSIQSVGQLMRLFGATISALDEAIQHGGDPLELIDEMVGWHKLVAAKAQVDALANLAGEDALVMATERYATLRRFGPAFFEAFSFKASGSRLQLIKAIDVIRDANQRKARHLPDSVPLPFPNRKWKQIITSGGRINRRLYEIAVAATLRDGLRAGDVWVEGSRSYQRFDAYLLSRRDTAKALEQLAFETDAQAYLAGRGRTLDWRLRRFAKQLKGGNLEGVSLDRDRLKIQQMPPISPPEAEALDRRLDGLLPRVRITELLLEVAERTGFLSAFRELRSGKEHDNPNAVLAAILADGTNLGLERMANASEGVTYAQIAWTHNWYLSPENYSHALQTIVAAHHQLPFARHWGAGTSSSSDGQFFRSGRSRSGAAEVNAKYGAEPGVKIYSHVSDHFASFGSRIMSATAGEAPYVLDGLVLGAGQLPLHEHYTDTGGASDHVFGLCHLLGFRFVPRLRDIADRKLGSILAPSSYRGIECLMGRTIKTAAIEADWDDIVRVVASIKDGTVAPSVIMRKLAAYKRQNKLDFALAELGRIERTLFALDWLEQPTLRRACQAGLNKGEARHTLAAAIYTNRQGRFTDRSLENQEYRASGLNLLIAAISYWNTLYLDRAVQHLGATDIEFDLALLAHLSPMGWAHISLTGDYLWDQAKRISAGEFRPLNDPLARLKLVA
SIO_010081: SAMIE_RS22530
subclass of: SO_0000673
so part of: SAMIE_RS22530
location: 13279..16248
location: region:13279-16248:1
so has part: feature:13279-16248:1:exon

WP_066704273.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13279-16248:1:exon

SAMIE_RS22535
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22535
old locus tag: SAMIE_4000120
so part of: sequence
location: complement(16161..16877)
location: region:16161-16877:-1
so has part: feature:16161-16877:-1:exon
subclass of: SO_0000010

position:16161:-1
position: 16161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16877:-1
position: 16877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16161-16877:-1:exon

SAMIE_RS22535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22535
old locus tag: SAMIE_4000120
EC number: 1.-.-.-
inference: COORDINATES: protein motif:HMM:NF014790.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acyl-CoA dehydrogenase family protein
translation: MYFSDEPDHIQMLRATLRRFIEKEAPRPKREEWRRAQAWPRDVFAKLSELGVCALTVPAEFGGQGPDWYAATAVIEELSRCGSFLAGPYIHCAFYGGGNVAESGSPEQKAVLLPKIAEGKVQFAYGFSEPDVGGDLASVQTRAHLEDGGDTVVINGSKRWCTGADWADYIICLVNSDPEGSKYRNLTLVLASLQGLCARQRFDGHFGNIGHATSLSRASGSFSGRNSPAEIRLAWSQR
SIO_010081: SAMIE_RS22535
subclass of: SO_0000673
so part of: SAMIE_RS22535
location: complement(16161..16877)
location: region:16161-16877:-1
so has part: feature:16161-16877:-1:exon

WP_232037501.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16161-16877:-1:exon

SAMIE_RS22540
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22540
so part of: sequence
location: complement(17012..17284)
location: region:17012-17284:-1
so has part: feature:17012-17284:-1:exon
subclass of: SO_0000010

position:17012:-1
position: 17012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17284:-1
position: 17284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17012-17284:-1:exon

SAMIE_RS22540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22540
inference: COORDINATES: protein motif:HMM:NF015582.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome C oxidase subunit IV family protein
translation: MTHSIRLTGIWALLIAVSLASFLMAEYHHARMLAVAVVMAIAGFKVRLVLYHFMDLGTVPPGFRWFFNCWVITCSVMIFGIYWYTAKMIA
SIO_010081: SAMIE_RS22540
subclass of: SO_0000673
so part of: SAMIE_RS22540
location: complement(17012..17284)
location: region:17012-17284:-1
so has part: feature:17012-17284:-1:exon

WP_066522072.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17012-17284:-1:exon

SAMIE_RS22545
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22545
old locus tag: SAMIE_4000130
so part of: sequence
location: complement(17297..17890)
location: region:17297-17890:-1
so has part: feature:17297-17890:-1:exon
subclass of: SO_0000010

position:17297:-1
position: 17297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17890:-1
position: 17890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17297-17890:-1:exon

SAMIE_RS22545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22545
old locus tag: SAMIE_4000130
inference: COORDINATES: protein motif:HMM:NF012720.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome c oxidase subunit 3
translation: MSETTLQGSEGKSALQTYPSIWAFIVLDSVIFGVFFLVFMVERLAQPGLFSASAKHLDPWLGFVNTLILISGSLLVALAVNAHRRGQGERVTRRLLVAAIAVSSCFGLIKITEYAEKFGSGITLVTNDFFTLYFALTGLHFVHYLFGMVVLAYLAWGTSSREATDPRFAIWLESGGLFWHFVDLLWIFLFSMLYLLW
SIO_010081: SAMIE_RS22545
subclass of: SO_0000673
so part of: SAMIE_RS22545
location: complement(17297..17890)
location: region:17297-17890:-1
so has part: feature:17297-17890:-1:exon

WP_066522074.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17297-17890:-1:exon

SAMIE_RS22550
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22550
old locus tag: SAMIE_4000140
so part of: sequence
location: complement(17937..18620)
location: region:17937-18620:-1
so has part: feature:17937-18620:-1:exon
subclass of: SO_0000010

position:17937:-1
position: 17937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18620:-1
position: 18620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17937-18620:-1:exon

SAMIE_RS22550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22550
old locus tag: SAMIE_4000140
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLAATVLFWGVLGHNIPPYSAGLSADEVAQKIIANATEVRIGMAIMMLLAILYFVWGVAVAKVMEVVERENKDNNVLSTMAYFSWALTVMIFIMPCSMWLTISYRPEVMEPQTLMLLYDWSWILFDTSYSLTTLGMVAMGVCLMSDRREKPLVPRWVCWVSIADGVAFLLLSLMPFVYEGPLSRSGSLNYYAQFSVFFFYWLVVSIAIVRASGRLVREHRESSSIRT
SIO_010081: SAMIE_RS22550
subclass of: SO_0000673
so part of: SAMIE_RS22550
location: complement(17937..18620)
location: region:17937-18620:-1
so has part: feature:17937-18620:-1:exon

WP_126516953.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17937-18620:-1:exon

SAMIE_RS22555
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22555
old locus tag: SAMIE_4000150
so part of: sequence
location: 18873..19286
location: region:18873-19286:1
so has part: feature:18873-19286:1:exon
subclass of: SO_0000010

position:18873:1
position: 18873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19286:1
position: 19286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18873-19286:1:exon

SAMIE_RS22555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22555
old locus tag: SAMIE_4000150
inference: COORDINATES: protein motif:HMM:NF013677.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MEQEIDGSGGVENGRRRRWTLEEKRAVVELSLDPACSMAEVAACFDVLPAQIYAWRRELREMAEDAAREDRAMFLPAVIEPTSVPAVLLEPEAANARLLPDAVVQVAMEVRGVPVMVAHGASSTLVASVIAALLRAR
SIO_010081: SAMIE_RS22555
subclass of: SO_0000673
so part of: SAMIE_RS22555
location: 18873..19286
location: region:18873-19286:1
so has part: feature:18873-19286:1:exon

WP_062346444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18873-19286:1:exon

SAMIE_RS22560
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
gene: tnpB
locus tag: SAMIE_RS22560
old locus tag: SAMIE_4000160
so part of: sequence
location: 19283..19654
location: region:19283-19654:1
so has part: feature:19283-19654:1:exon
subclass of: SO_0000010

position:19283:1
position: 19283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19654:1
position: 19654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19283-19654:1:exon

SAMIE_RS22560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
gene: tnpB
locus tag: SAMIE_RS22560
old locus tag: SAMIE_4000160
inference: COORDINATES: protein motif:HMM:NF017528.2
note: TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family insertion sequence element accessory protein TnpB
translation: MIGPGSDAKVLIYTKPIDFRCGIDTLVAKVQHELSQDPWRGVAYIFRSKRKDRLKILWFDGTGIWLMTKRAEAAEGFAWPPAVDGSFSITAAQMAALTSGMDWRRHRAPRRVNPPKIEGFADA
SIO_010081: SAMIE_RS22560
subclass of: SO_0000673
so part of: SAMIE_RS22560
location: 19283..19654
location: region:19283-19654:1
so has part: feature:19283-19654:1:exon

WP_062346440.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19283-19654:1:exon

SAMIE_RS22565
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22565
old locus tag: SAMIE_4000170
so part of: sequence
location: 19949..21442
location: region:19949-21442:1
so has part: feature:19949-21442:1:exon
subclass of: SO_0000010

position:19949:1
position: 19949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21442:1
position: 21442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19949-21442:1:exon

SAMIE_RS22565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22565
old locus tag: SAMIE_4000170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612218.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family transposase
translation: MEDALAAARDEVKRLNDILDQFKRHRFGQSAERLDPDQYQLVLEELEAALSRAEAGLEALIDQADATGETKRRRRNNRGALPAHLERIEQVVDIEDKQCACCGNDLHVIGEDVTERLDVVPTIFRVLVTRRPRYGCRGCDEGGVTQAPAPSFIVDQGLPTDALVAQVIVARYADHLPLYRQAQIYARQGIDLDRATLADWVGRVGWWLTPLRQHLLAELRSSVKLFADETRMPVLAPGTGKTKSGQLWAYARDDRPWGGLAPPAVVYMYAAGRGGMHPIDHLGDFAGVLQVDGYAGYNEIKRRNGVTLAFCLLHARRKFYDFREKEPVADEVLRRFSAIYKIEATLRDTSPEARFEGRQLILKPLFDNLRDYLSKNLGRFSAKGKMAEAINYMLNHWQQLTYCLLDGRVELDTNTVERSIRPIALSRRNSLFAGSDAGADNWAVLASLLETCKLSDVDPLAWLTATLTKLANGHSNKDLDSLMPWHFPKIAGRNAPS
SIO_010081: SAMIE_RS22565
subclass of: SO_0000673
so part of: SAMIE_RS22565
location: 19949..21442
location: region:19949-21442:1
so has part: feature:19949-21442:1:exon

WP_066522435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19949-21442:1:exon

SAMIE_RS22570
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22570
old locus tag: SAMIE_4000180
so part of: sequence
location: 21481..21795
location: region:21481-21795:1
so has part: feature:21481-21795:1:exon
subclass of: SO_0000010

position:21481:1
position: 21481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21795:1
position: 21795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21481-21795:1:exon

SAMIE_RS22570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22570
old locus tag: SAMIE_4000180
inference: COORDINATES: protein motif:HMM:NF024242.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AraC family transcriptional regulator
translation: MTDTPTLSEVADKLHIAQRTLIRRLGRLGTTYQEITDRFLFCRAREMLENDQLAIKEIAAAIGFDDPANFGKAFKRWCGMSPGSYRKQRQDMGGTGPALSAETH
SIO_010081: SAMIE_RS22570
subclass of: SO_0000673
so part of: SAMIE_RS22570
location: 21481..21795
location: region:21481-21795:1
so has part: feature:21481-21795:1:exon

WP_096362254.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21481-21795:1:exon

SAMIE_RS22575
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22575
old locus tag: SAMIE_4000190
so part of: sequence
location: complement(22058..22825)
location: region:22058-22825:-1
so has part: feature:22058-22825:-1:exon
subclass of: SO_0000010

position:22058:-1
position: 22058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22825:-1
position: 22825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22058-22825:-1:exon

SAMIE_RS22575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22575
old locus tag: SAMIE_4000190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015918564.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6 family transposase
translation: MSGFKGRHFEGEIVLWAVRWYCRYGISYRDLEQMMGERGVNVDHSTIYRWVQRYAPEIEKRLRWQWRRPASTSWRVDETYIKVRGAWTYLYRAVDKDGNTIDFYLSPTRNTKAAKRFLGKALGGLKDWEKPEIINTDKAPTYTAAIAELKAEGKCPKDTQHRQVKYLNNVVEADHGKLKQLIRPVRGFKTLKTAYATIKGFEVMRALRKGQAAAFNLTRDICGEARLVERAFGLGACALTEAIQLIGKRMELEAA
SIO_010081: SAMIE_RS22575
subclass of: SO_0000673
so part of: SAMIE_RS22575
location: complement(22058..22825)
location: region:22058-22825:-1
so has part: feature:22058-22825:-1:exon

WP_066521070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22058-22825:-1:exon

SAMIE_RS22580
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22580
old locus tag: SAMIE_4000200
so part of: sequence
location: 22894..23931
location: region:22894-23931:1
so has part: feature:22894-23931:1:exon
subclass of: SO_0000010

position:22894:1
position: 22894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23931:1
position: 23931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22894-23931:1:exon

SAMIE_RS22580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22580
old locus tag: SAMIE_4000200
inference: COORDINATES: protein motif:HMM:NF012312.2
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MFLGSLSDRIGRRKVLIPSLIFFSLASGVSGLAGGFMSLLLIRGVMGVAEGAFCPTSFAAVAEASKPSRIGFNQGLQQSMFALFGLGFGPFIAAWLLSFTTWRGVFLLVTVPGLILSALIWMCIRDRTPAATQSDSVSHRPSEPSASIGQVLKVRNVRIGMLGLLCAMCGIFTLAAFAPLYLTEHLHLDAWAAASAASAIGFGGFAGQWILPTLSDIYGRRPMAILGFLGGAIFVFAFINTGASILPLFGTLFGATVCSFGLLSLISGPIAAESAPPGMVSTAAGLIIGVGEVFGGGLALVVAGYLIATYGIQSMLYLALGGLAIGVLLMFFLKETAPRKLAITD
SIO_010081: SAMIE_RS22580
subclass of: SO_0000673
so part of: SAMIE_RS22580
location: 22894..23931
location: region:22894-23931:1
so has part: feature:22894-23931:1:exon

WP_066521073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22894-23931:1:exon

SAMIE_RS22585
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
gene: istB
locus tag: SAMIE_RS22585
old locus tag: SAMIE_4000210
so part of: sequence
location: complement(24041..24904)
location: region:24041-24904:-1
so has part: feature:24041-24904:-1:exon
subclass of: SO_0000010

position:24041:-1
position: 24041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24904:-1
position: 24904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24041-24904:-1:exon

SAMIE_RS22585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
gene: istB
locus tag: SAMIE_RS22585
old locus tag: SAMIE_4000210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008833340.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21-like element helper ATPase IstB
translation: MTKAHNVDAQRLSFILNELRLPAIKVIWPEFTERADKEGWPATRLLAALTEHEMAERDRRRIERHLSDARLPPGKTLDSFAFDAVPMVSRAQVTAMTSGDGWLEKGANLILFGPPGGGKSHLAAAIGLQLVQNGWRVLFTRTSELVQKLQLARRELALESAIAKLDKYHLLILDDLAYVAKDQAETSVLFELISARYERRSMLITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRAALQRQTGAGRTPKYATIKSIEKMSISDNQSEESPLPATI
SIO_010081: SAMIE_RS22585
subclass of: SO_0000673
so part of: SAMIE_RS22585
location: complement(24041..24904)
location: region:24041-24904:-1
so has part: feature:24041-24904:-1:exon

WP_004211466.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24041-24904:-1:exon

SAMIE_RS22590
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
gene: istA
locus tag: SAMIE_RS22590
old locus tag: SAMIE_4000220
so part of: sequence
location: complement(24901..26373)
location: region:24901-26373:-1
so has part: feature:24901-26373:-1:exon
subclass of: SO_0000010

position:24901:-1
position: 24901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26373:-1
position: 26373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24901-26373:-1:exon

SAMIE_RS22590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
gene: istA
locus tag: SAMIE_RS22590
old locus tag: SAMIE_4000220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011053314.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21 family transposase
translation: MRLFMKLRQTNPVPVAAAKAGFSTATGYRIASDPVLPSHRKAPRGRRRPDPLESIFESEIVPMLKAAPGLRAVAIFEEMRRRHPDLDFGVRRTMERRIRAWRAVHGPEQEVIFRQTHEPGRMGLSDFTDMRSLKVTIAGAPLDHLLYHFRLVWSGFEHAHVILGGESYVALAEGLQNALWMLGGAPGEHRSDSLSAAFRNLDADARADLTTRYDALCEHYGMTPTRNNRGIAHENGSVESSHGHLKAAVEDALAMRGSTDFEDLAAYRRFIDEIVARKNRRSAARIDTERATLKPLPDRRTSDYEEHILPVTSSSTFVLRKVFYTVPSRLIGHRLRVRLYDDRLDLFLGGSYLMTRPRGRPKSATEHGYVVDYRHVIHSLRRKPMALLQLTYRDQLFPREAYRLMFERLLEAMSERDACRKMVELLSMAHERACEAELADLLAQDLDEGRLPDIAALRTRFSPDPAALPEVVVELGPLTDYDALLLGEAA
SIO_010081: SAMIE_RS22590
subclass of: SO_0000673
so part of: SAMIE_RS22590
location: complement(24901..26373)
location: region:24901-26373:-1
so has part: feature:24901-26373:-1:exon

WP_161626247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24901-26373:-1:exon

SAMIE_RS22595
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22595
old locus tag: SAMIE_4000230
so part of: sequence
location: complement(27023..27793)
location: region:27023-27793:-1
so has part: feature:27023-27793:-1:exon
subclass of: SO_0000010

position:27023:-1
position: 27023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27793:-1
position: 27793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27023-27793:-1:exon

SAMIE_RS22595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22595
old locus tag: SAMIE_4000230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020648694.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IclR family transcriptional regulator C-terminal domain-containing protein
translation: MSEPHPDFMQSLARGLQVLEAFRELGAGQSIASLSTHTDLPRGVIARCLYTLSELGYVGRRERLYHVLPGVLRLADAFLSDRSLSALAQPVLEGLRDELDESCSLAVLDGAEILYVARASRSRIMSIGLHVGSRLPAWVTSMGRVLLASLAPAERDTLLPQEPLPRLTPLTLVDRAALEKVLEGVVGNGYAIVDQELEIGLRSIAVPVCNEAGCTIGALNVGTNALERSLQDLEKTILPALTRAASSLGRQAHLSG
SIO_010081: SAMIE_RS22595
subclass of: SO_0000673
so part of: SAMIE_RS22595
location: complement(27023..27793)
location: region:27023-27793:-1
so has part: feature:27023-27793:-1:exon

WP_066521082.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27023-27793:-1:exon

SAMIE_RS22600
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
gene: pcaF
locus tag: SAMIE_RS22600
old locus tag: SAMIE_4000240
so part of: sequence
location: complement(27862..29064)
location: region:27862-29064:-1
so has part: feature:27862-29064:-1:exon
subclass of: SO_0000010

position:27862:-1
position: 27862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29064:-1
position: 29064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27862-29064:-1:exon

SAMIE_RS22600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
gene: pcaF
locus tag: SAMIE_RS22600
old locus tag: SAMIE_4000240
EC number: 2.3.1.174
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007248855.1
GO function: GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO process: GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-oxoadipyl-CoA thiolase
translation: MAHAFLCDAVRTPIGRFGGALAPVRADDLAAIPIKALLERNSGLDPAAIEEVFLGSANQAGEDNRNVARMAALLSGLPTNVPGTTLNRLCASGADAVGTAARAVVSGQIDLAIAGGVESMTRAPLVMGKAEKAWSRTPSIEDTTIGWRFVNPAMKALYGVDSMPETGENVARDYGVSRADQDFFALRSQQRAAVSQANGFFAEEIVPVTITGRKGNVIVDRDEHPRPETTAEALAKLKPIVHTDGTVTAGNASGVNDGAAAMLIASEAALKAHGLTPRARVLGMATAGVEPRVMGIGPVPASRKLLARLGLTIDDFDLIEINEAFASQVIASMRELGVDPGDERLNPNGGAIALGHPLGMSGARLALTAAHSLQQSGGKRALVTMCIGVGQGLALALERA
SIO_010081: SAMIE_RS22600
subclass of: SO_0000673
so part of: SAMIE_RS22600
location: complement(27862..29064)
location: region:27862-29064:-1
so has part: feature:27862-29064:-1:exon

WP_066521085.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27862-29064:-1:exon

SAMIE_RS22605
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22605
old locus tag: SAMIE_4000250
so part of: sequence
location: complement(29064..29741)
location: region:29064-29741:-1
so has part: feature:29064-29741:-1:exon
subclass of: SO_0000010

position:29741:-1
position: 29741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29064-29741:-1:exon

SAMIE_RS22605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22605
old locus tag: SAMIE_4000250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010215008.1
GO function: GO:0008410 - CoA-transferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-oxoacid CoA-transferase subunit B
translation: MMTQNTSGWSREQMAERAARELEDGYYVNLGIGIPTLVANYVPHDIEVTLQSENGMLGMGPFPYADEVDPDLINAGKQTITQLPTSSFFSSADSFAMIRGGHIDLTVLGAMEVSASGDIANWTIPGKMVKGMGGAMDLVAGVKRVVVVMEHCNKHGAPKILEECSLPLTGQNVVDLIVTDLCVLACDKVAGGLTLVELAPGITAEQVVSSTAAAVDISAFEAEAA
SIO_010081: SAMIE_RS22605
subclass of: SO_0000673
so part of: SAMIE_RS22605
location: complement(29064..29741)
location: region:29064-29741:-1
so has part: feature:29064-29741:-1:exon

WP_217998389.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29064-29741:-1:exon

SAMIE_RS22610
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22610
old locus tag: SAMIE_4000260
so part of: sequence
location: complement(29738..30448)
location: region:29738-30448:-1
so has part: feature:29738-30448:-1:exon
subclass of: SO_0000010

position:29738:-1
position: 29738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30448:-1
position: 30448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29738-30448:-1:exon

SAMIE_RS22610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22610
old locus tag: SAMIE_4000260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007405018.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CoA transferase subunit A
translation: MPRKIFDDPRAALEGLLFDGMTIMSGGFGLSGNPESLIPEIRSAGVKGLTVISNNAGADGFGLWALLESRQVRKMISSYVGENKLFEQQYLSGELELELNPQGTLAERIRAGGAGIPAFYTATGVGTVVAEGKPVEEFDGKAYVRETWLRADLAIIKAWRADPSGNLMFRKTARNFNPNMATAAKVTVVEVEEIVEPGTFDPDTIHTPGIYVDRIVLSTINEKRIEKLTTRERESA
SIO_010081: SAMIE_RS22610
subclass of: SO_0000673
so part of: SAMIE_RS22610
location: complement(29738..30448)
location: region:29738-30448:-1
so has part: feature:29738-30448:-1:exon

WP_066521087.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29738-30448:-1:exon

SAMIE_RS22615
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22615
old locus tag: SAMIE_4000270
so part of: sequence
location: 30601..31500
location: region:30601-31500:1
so has part: feature:30601-31500:1:exon
subclass of: SO_0000010

position:30601:1
position: 30601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31500:1
position: 31500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30601-31500:1:exon

SAMIE_RS22615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22615
old locus tag: SAMIE_4000270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008996022.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MRAGSADAFKVTETHGILMRPEHQIVQSSDTLGWRSLYASHQFERPYSDRFEGRDDHLIIVHLSGPVRVERNLSGEQEKQRIAPGGLFVLPPNQDFGVSLTAPLETIHLYIRRSLIRAAAQELCKGDPEKVEFLPRFGERDPLIEQMGRMVCGMMADNQSDFFADGVARLLAAQIVRHHSCGLQAELPRITGLNQRQLEAVHDVIEERMEESLSIDDLAEAVGLSPIHFARQFKRSTGKAPHQYLIEMRVSRARHLLAGDLPIAEIAYRCGFSHQEHLTRLFGRQQGTTPAAYRRALRL
SIO_010081: SAMIE_RS22615
subclass of: SO_0000673
so part of: SAMIE_RS22615
location: 30601..31500
location: region:30601-31500:1
so has part: feature:30601-31500:1:exon

WP_066521089.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30601-31500:1:exon

SAMIE_RS22620
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22620
old locus tag: SAMIE_4000280
so part of: sequence
location: 31759..32271
location: region:31759-32271:1
so has part: feature:31759-32271:1:exon
subclass of: SO_0000010

position:31759:1
position: 31759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32271:1
position: 32271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31759-32271:1:exon

SAMIE_RS22620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22620
old locus tag: SAMIE_4000280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008996021.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydroxyquinol 1,2-dioxygenase
translation: MADVVTEFGALTDYRKGGVEIIDDDPRNYVFSNVFEVAANAAPYERVAVGKNFEYVIESARAEGTSGWFSCAHDEFVLAMDGQIEVHLLKLDNSDAYVDPDSEGAVAIGEALPEGRKMGRIVLRRGHMALLPVGAAYRFYAEQPAAMLFQSIEGAVTVQKWGEICQTEAA
SIO_010081: SAMIE_RS22620
subclass of: SO_0000673
so part of: SAMIE_RS22620
location: 31759..32271
location: region:31759-32271:1
so has part: feature:31759-32271:1:exon

WP_066703981.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31759-32271:1:exon

SAMIE_RS22625
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22625
old locus tag: SAMIE_4000290
so part of: sequence
location: 32317..33342
location: region:32317-33342:1
so has part: feature:32317-33342:1:exon
subclass of: SO_0000010

position:32317:1
position: 32317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33342:1
position: 33342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32317-33342:1:exon

SAMIE_RS22625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22625
old locus tag: SAMIE_4000290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008996020.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydroxyquinol 1,2-dioxygenase
translation: MAMSEALEIIDFGDSKARTDTEHLAINNETGYRSFRAGGFTFTRDEYFARLTWPGGSHIIPIDAFLRAMMRDVAWGFFYGVVNFDHVFGTINHYGEVTMFAGRFNDAYRNAGRDHEERFKSSALMAVFKDILSDWTVEGYDPFAAPMETGLPWGIKNGNNDEAISRQRVTARRMVGLPGDTPVRTDANGFPVNRQFADVPQEQPVVEAEPGFEAEVSAYNLFGYLSRSDVTWNPSVCSVVGDSLFCPTSEEFILPVEHGNDRCEWFLQLSDEIVWDVKDKESGKPRARVTARAGDICCMPADIRHQGYSTKRSMLLVWENGSPKIPQMIADGTAPVVPVTF
SIO_010081: SAMIE_RS22625
subclass of: SO_0000673
so part of: SAMIE_RS22625
location: 32317..33342
location: region:32317-33342:1
so has part: feature:32317-33342:1:exon

WP_066521100.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32317-33342:1:exon

SAMIE_RS24025
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS24025
old locus tag: SAMIE_4000300
so part of: sequence
location: 33407..34540
location: region:33407-34540:1
so has part: feature:33407-34540:1:exon
subclass of: SO_0000010

position:33407:1
position: 33407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34540:1
position: 34540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33407-34540:1:exon

SAMIE_RS24025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS24025
old locus tag: SAMIE_4000300
inference: COORDINATES: protein motif:HMM:NF019268.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: outer membrane beta-barrel protein
translation: MKKGVSLALIGAGLGVLMAFPATAQEASAPQKVGPPAPAAADESPPNAGSAVASNPAGALARAVLGDGLESHKIMLLGWGEASAVTSTNDSKDVSPAAFFNTERGLNLNQLGVMLCSGRACPPFSFGPGAGVHNRVGPFPGPTPEHVTVDFNVTAIYGQDVQFLKLSGLDGDFHFDRNKDLKLGVTQAYADIYLPFLKGTSVMIGSFQTPLENAFNPPNWFATHTYGFQHGPAKHVGALAQTRVASGPAGHFSVDYGVVLGWNDWDNRNKNLDFIGGLRWRSADMRTWVDLEAIYGNGENDFGPAPGRGGSPYFALSSTGKYLGRLSSFLTVSHSLSPKFQVAMEASYGQQEAGDIAFVPWAITQGTVVRRQPGRAL
SIO_010081: SAMIE_RS24025
subclass of: SO_0000673
so part of: SAMIE_RS24025
location: 33407..34540
location: region:33407-34540:1
so has part: feature:33407-34540:1:exon

WP_162849118.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33407-34540:1:exon

SAMIE_RS24030
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS24030
old locus tag: SAMIE_4000310
so part of: sequence
location: 34449..34793
location: region:34449-34793:1
so has part: feature:34449-34793:1:exon
subclass of: SO_0000010

position:34449:1
position: 34449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34793:1
position: 34793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34449-34793:1:exon

SAMIE_RS24030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS24030
old locus tag: SAMIE_4000310
inference: COORDINATES: protein motif:HMM:NF019268.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: outer membrane beta-barrel protein
translation: MVSRRPVTSHSCLGRSPKARWYGANLGARYSLSDKVSVNGRAEWFTDEQGAHALWAGVRGDVYAATGNVEYQLTPAIRLRAEARYDIHDGPGRLFDNYSKDQQLTGLLNAFFLF
SIO_010081: SAMIE_RS24030
subclass of: SO_0000673
so part of: SAMIE_RS24030
location: 34449..34793
location: region:34449-34793:1
so has part: feature:34449-34793:1:exon

WP_083949188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34449-34793:1:exon

SAMIE_RS22640
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22640
old locus tag: SAMIE_4000320
so part of: sequence
location: 34840..36303
location: region:34840-36303:1
so has part: feature:34840-36303:1:exon
subclass of: SO_0000010

position:34840:1
position: 34840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36303:1
position: 36303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34840-36303:1:exon

SAMIE_RS22640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22640
old locus tag: SAMIE_4000320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014900394.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aldehyde dehydrogenase family protein
translation: MQTKLLIGGEWVDGSAGTTIPVENPYDGSIIAHIAEATAEDVDRAVAAAEAALPAWRALPAHERGRLLLKLADRIEEETADLARLEATDTGHPIRDCLSLDVPRTALCFRYFGGMADKLEGSVVPVDAGFLNYVEREPIGVVGAIVPWNFPLMFTSWKMGPALAAGNTMVIKPSEITPLSTLRIGELMMEVGIPAGVINIVTGYGHTAGQRIAEHPRIGKVAFTGSTATGRRIVEASVSNLKKIQLELGGKGPNIIFADANIPAAIGGSAFAIFHNQGQACIAGSRMIVHESIADEVIERFTALAKSIRIGDPLDPETEMGPLTSRLHQQRVLSFVEVAKEEGGAVLAGGKVPEGEAYAKGCFVEPTIVRAKATDRVAQEEVFGPFVTILTFKDDEEALAIANGTDYGLGAGLWTNDLTRAHLFAKKLHAGMVWINCYKRVHPASPFGGVGMSGYGREMGFEAMREYTQPKSVWVNVDANLPPFYKR
SIO_010081: SAMIE_RS22640
subclass of: SO_0000673
so part of: SAMIE_RS22640
location: 34840..36303
location: region:34840-36303:1
so has part: feature:34840-36303:1:exon

WP_066521111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34840-36303:1:exon

SAMIE_RS22645
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22645
old locus tag: SAMIE_4000330
so part of: sequence
location: 36309..37367
location: region:36309-37367:1
so has part: feature:36309-37367:1:exon
subclass of: SO_0000010

position:36309:1
position: 36309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37367:1
position: 37367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36309-37367:1:exon

SAMIE_RS22645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22645
old locus tag: SAMIE_4000330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008996018.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: maleylacetate reductase
translation: MQDFIYCGQTAHVFFGQGSISRLEEAIATVGGTRALLLSTPNQAEQAQALTRGVESIIGVFDGATMHTPVEVTDTALKHIEASEADCLVAFGGGSTIGLAKAIALRTDLPQVAVPTTYAGSEMTPILGQTENGRKTTLKSPKVLPELVIYDVDLTLGLPVGMSGTSGINAIAHAVEGLYAKDTNPVMRMLAAAGIEALAEALPTIARKADDVDARSQALYGAWLCGTVLGSVGMALHHKLCHTLGGTFDLPHAETHTVVLPHALAYNAPAIPDSIDVLRKALKNDDPAQALFVLGRAVNAPASLRELGMPEDGIDKAADQAVENAYWNPRSLERDDLRNLIARAWAGERPAS
SIO_010081: SAMIE_RS22645
subclass of: SO_0000673
so part of: SAMIE_RS22645
location: 36309..37367
location: region:36309-37367:1
so has part: feature:36309-37367:1:exon

WP_066521105.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36309-37367:1:exon

SAMIE_RS22650
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22650
old locus tag: SAMIE_4000340
so part of: sequence
location: 37364..38191
location: region:37364-38191:1
so has part: feature:37364-38191:1:exon
subclass of: SO_0000010

position:37364:1
position: 37364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38191:1
position: 38191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37364-38191:1:exon

SAMIE_RS22650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22650
old locus tag: SAMIE_4000340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006752307.1
GO function: GO:0018576 - catechol 1,2-dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO process: GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dioxygenase
translation: MKGAIFPELTEAVIDAMAAAPNPRLREIMTVLVRHLHAAVRETRLTEEEWLAAVEFLTATGQICSGSRQEFILLSDTLGVSMLVDAINHNDGDVVTPSTVFGPFYSGIQRELATGASILLRPEDGDATLVSGSIADQDGNPIEGALIEVWQTAPCGLYDVQDQGQPEGHLRASFRSTPDGSYSFQTVLPVSYPIPADGPVGRMLGALGRHPNRPAHIHFMISAPGYRRLVTHIFVAGDDYLKSDAVFGVKPDLVVHPRPDGDRLAIDYDFRLAGA
SIO_010081: SAMIE_RS22650
subclass of: SO_0000673
so part of: SAMIE_RS22650
location: 37364..38191
location: region:37364-38191:1
so has part: feature:37364-38191:1:exon

WP_066521113.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37364-38191:1:exon

SAMIE_RS22655
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22655
old locus tag: SAMIE_4000350
so part of: sequence
location: 38198..38593
location: region:38198-38593:1
so has part: feature:38198-38593:1:exon
subclass of: SO_0000010

position:38198:1
position: 38198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38593:1
position: 38593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38198-38593:1:exon

SAMIE_RS22655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22655
old locus tag: SAMIE_4000350
inference: COORDINATES: protein motif:HMM:NF012575.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rieske (2Fe-2S) protein
translation: MEAETIRDYWRLRPHAPAIGTELCPAVEIEEGRAREFHFGRGRNMFRMFVIRHEGVLRGYLNLCPHFSLPLNHELDQFMVDGVIVCVQHFARFRPDDGTCIDGACDDSRLDAVPVYEDVDRLVRVGEAKPA
SIO_010081: SAMIE_RS22655
subclass of: SO_0000673
so part of: SAMIE_RS22655
location: 38198..38593
location: region:38198-38593:1
so has part: feature:38198-38593:1:exon

WP_066521108.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38198-38593:1:exon

SAMIE_RS22660
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22660
old locus tag: SAMIE_4000360
so part of: sequence
location: complement(39186..39767)
location: region:39186-39767:-1
so has part: feature:39186-39767:-1:exon
subclass of: SO_0000010

position:39186:-1
position: 39186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39767:-1
position: 39767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39186-39767:-1:exon

SAMIE_RS22660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22660
old locus tag: SAMIE_4000360
inference: COORDINATES: protein motif:HMM:NF016176.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YceI family protein
translation: MRAIFLYPIAATALAASLLNAPAVAAPAPTWTVNKAQSRLGFQASMNGQAISGAFRRFDARIAFDPANLSGSSVVAVIDTGSAATGDATRDESLPTPDWFNTKVFPRATFTSKSFKSLGGNRYQAAGTLNIRGVNRPVVLPFQLNINRGEARMQGSLVIDRRWFGVGRGQFASTDAVAANVRVNVTIQAARAK
SIO_010081: SAMIE_RS22660
subclass of: SO_0000673
so part of: SAMIE_RS22660
location: complement(39186..39767)
location: region:39186-39767:-1
so has part: feature:39186-39767:-1:exon

WP_066522462.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39186-39767:-1:exon

SAMIE_RS22665
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22665
old locus tag: SAMIE_4000370
so part of: sequence
location: complement(39772..40362)
location: region:39772-40362:-1
so has part: feature:39772-40362:-1:exon
subclass of: SO_0000010

position:39772:-1
position: 39772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40362:-1
position: 40362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39772-40362:-1:exon

SAMIE_RS22665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22665
old locus tag: SAMIE_4000370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012321321.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytochrome b
translation: MRQRTRYSAVAMLLHWSIAALIIANLFLGWRMGFLKGLAQFDMFQLHKSVGITVLVLSIVRLVWRMLNPVPPLPAGMKGWEVAAAHVTHWAFYGLMIGLPLTGWAVVSVSPWNIPTLLWHTIPWPHIGLLHDLPINAKQAVEKVGGSIHMYFAFGGTALIVMHIGAALKHQFISRDGVLGRMVPGLRSTPHTSSEA
SIO_010081: SAMIE_RS22665
subclass of: SO_0000673
so part of: SAMIE_RS22665
location: complement(39772..40362)
location: region:39772-40362:-1
so has part: feature:39772-40362:-1:exon

WP_066522461.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39772-40362:-1:exon

SAMIE_RS22675
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22675
old locus tag: SAMIE_4000380
so part of: sequence
location: 40575..41339
location: region:40575-41339:1
so has part: feature:40575-41339:1:exon
subclass of: SO_0000010

position:40575:1
position: 40575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41339:1
position: 41339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40575-41339:1:exon

SAMIE_RS22675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22675
old locus tag: SAMIE_4000380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS6100 family transposase
translation: MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
SIO_010081: SAMIE_RS22675
subclass of: SO_0000673
so part of: SAMIE_RS22675
location: 40575..41339
location: region:40575-41339:1
so has part: feature:40575-41339:1:exon

WP_001389365.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40575-41339:1:exon

SAMIE_RS22685
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22685
old locus tag: SAMIE_4000390
so part of: sequence
location: 41413..42003
location: region:41413-42003:1
so has part: feature:41413-42003:1:exon
subclass of: SO_0000010

position:41413:1
position: 41413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42003:1
position: 42003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41413-42003:1:exon

SAMIE_RS22685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22685
old locus tag: SAMIE_4000390
inference: COORDINATES: protein motif:HMM:NF012801.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TonB-dependent receptor
translation: MGASAFYKDIVSLIRSEIVVQSLPVQIIRASGETSTSNLNFNVSRIVNGSGVTVKGFELFYQQAFTFLPAPFDGLGASANYTFIDNSDPEQLTAASRNNFNLTAYYEKGPAGVRLSYAWRGGFLLSPSSAQAMGTRSLAYGTLDGSASLKITDNASLTLEGVNLLNAAQLTQFTSGLPSAYVDAGRRILFGARFSF
SIO_010081: SAMIE_RS22685
subclass of: SO_0000673
so part of: SAMIE_RS22685
location: 41413..42003
location: region:41413-42003:1
so has part: feature:41413-42003:1:exon

WP_269472508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41413-42003:1:exon

SAMIE_RS22690
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22690
old locus tag: SAMIE_4000400
so part of: sequence
location: complement(42483..43832)
location: region:42483-43832:-1
so has part: feature:42483-43832:-1:exon
subclass of: SO_0000010

position:42483:-1
position: 42483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43832:-1
position: 43832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42483-43832:-1:exon

SAMIE_RS22690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22690
old locus tag: SAMIE_4000400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013039775.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1380 family transposase
translation: MNDDIASTFRFPAAGRKKVTAAFDGGRLTSDGGVLLLAQAERTMGICQRLAACIADWRDPARVVHRLDDILRARVFAIACGYEDADDLDALRDDPGFRLALGKLPGSGAGLASQPTMSRWENAPTTRELARMMAAMIDIYCASYPAPPAAVTLDIDDTCDVVHGYQQLSFWNGHHGERCFLPIHVYDTATGRPVAMLLRTGKTPSGVEAAGHIRRLVRHIRRNWPETHITIRGDGHYGRPEVMAFCEAASVDYVFGLPTNAALRGDPVIVAVADACAVKRAQRQYPVLRTYAETSYGAKSWNCQRRVVARIEASTMGMDIRYVVTSLAKGSAEHIYDTLYCARGNAENLIKRHKTQLASDRTSCRSANANQMRLILHTAAYWLLWRIQQEIPKATALAAAEFATLRLRLLKVAARVIETATRIRVAFASACPDASVFRAIAISLRPAPT
SIO_010081: SAMIE_RS22690
subclass of: SO_0000673
so part of: SAMIE_RS22690
location: complement(42483..43832)
location: region:42483-43832:-1
so has part: feature:42483-43832:-1:exon

WP_162849047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42483-43832:-1:exon

SAMIE_RS22695
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22695
old locus tag: SAMIE_4000410
so part of: sequence
location: 44176..44808
location: region:44176-44808:1
so has part: feature:44176-44808:1:exon
subclass of: SO_0000010

position:44176:1
position: 44176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44808:1
position: 44808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44176-44808:1:exon

SAMIE_RS22695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22695
old locus tag: SAMIE_4000410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013831444.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MEMPETELTAAKRPVWNAGRTVGAKRALKPKQIWEIRFYLNQRRRLRDRALFDLAIDSKLRGCDLVQMKIGDIVSGGQIRTRAIVMQQKTGRPVQFELLPDARASLLAWLDRRGGTVDDYVFPSRVDHNGHLSTRQYARLVDEWVTGVGLMRNEYGTHSLRRTKASIIYRATGNLRAVQILLGHSKIENTVRYLGIDVEDALALAENTEI
SIO_010081: SAMIE_RS22695
subclass of: SO_0000673
so part of: SAMIE_RS22695
location: 44176..44808
location: region:44176-44808:1
so has part: feature:44176-44808:1:exon

WP_066522348.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44176-44808:1:exon

SAMIE_RS23210
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS23210
so part of: sequence
location: complement(44963..45262)
location: region:44963-45262:-1
so has part: feature:44963-45262:-1:exon
subclass of: SO_0000010

position:44963:-1
position: 44963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45262:-1
position: 45262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44963-45262:-1:exon

SAMIE_RS23210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS23210
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVELHLLGSRSMHTRVLTKAGQYWARAETLLRKHPVRLPVNAELGTDCGHRRVHAMGLKHDNRHCLEYDLVRRFDNDRFISSGSMVSLFRKSIGCETAD
SIO_010081: SAMIE_RS23210
subclass of: SO_0000673
so part of: SAMIE_RS23210
location: complement(44963..45262)
location: region:44963-45262:-1
so has part: feature:44963-45262:-1:exon

WP_123905560.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44963-45262:-1:exon

SAMIE_RS22700
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22700
old locus tag: SAMIE_4000420
so part of: sequence
location: 45431..45733
location: region:45431-45733:1
so has part: feature:45431-45733:1:exon
subclass of: SO_0000010

position:45431:1
position: 45431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45733:1
position: 45733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45431-45733:1:exon

SAMIE_RS22700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22700
old locus tag: SAMIE_4000420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012076428.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YciI family protein
translation: MGTFVFEALDRPGMEARRLQARDLHRAYIRNTPTGMRCVLGGPLRERADGPMHGTLLVFEADNADDVRTFMANDPYQLADLFEMVTVWEWSLGLGHIVVG
SIO_010081: SAMIE_RS22700
subclass of: SO_0000673
so part of: SAMIE_RS22700
location: 45431..45733
location: region:45431-45733:1
so has part: feature:45431-45733:1:exon

WP_066522351.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45431-45733:1:exon

SAMIE_RS22705
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22705
old locus tag: SAMIE_4000430
so part of: sequence
location: complement(45798..46697)
location: region:45798-46697:-1
so has part: feature:45798-46697:-1:exon
subclass of: SO_0000010

position:45798:-1
position: 45798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46697:-1
position: 46697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45798-46697:-1:exon

SAMIE_RS22705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22705
old locus tag: SAMIE_4000430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010339591.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pirin family protein
translation: MSTLTHPSEGVDTVVVPNSRDLGDGFFVRRALPSPQRQMVGPFIFFDEMGPVAFRGGQGLDVRPHPHIGLSTLTYLLEGEIVHRDSLGIHQTIRPGEINWMTAGRGIVHSERTDLDTRKSDSVLSGLQVWIALPTADEETAPSFDHFKAQEIPIEDEGGVRFTLIAGQSEGLQSPVKTFSDLVYAEIQLQHGARYKANDEHIERAFYVVSGAIEVVGQTGSFGAGQLVVLKPHAEVIIRASGQTGVMLIGGEPFPEERHVYWNLVSSRPDRIEQAKEDWRHDRFARVPDETDFIPLPSV
SIO_010081: SAMIE_RS22705
subclass of: SO_0000673
so part of: SAMIE_RS22705
location: complement(45798..46697)
location: region:45798-46697:-1
so has part: feature:45798-46697:-1:exon

WP_066522347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45798-46697:-1:exon

SAMIE_RS22710
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
gene: wrbA
locus tag: SAMIE_RS22710
old locus tag: SAMIE_4000440
so part of: sequence
location: 47000..47599
location: region:47000-47599:1
so has part: feature:47000-47599:1:exon
subclass of: SO_0000010

position:47000:1
position: 47000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47599:1
position: 47599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47000-47599:1:exon

SAMIE_RS22710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
gene: wrbA
locus tag: SAMIE_RS22710
old locus tag: SAMIE_4000440
EC number: 1.6.5.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006162678.1
GO function: GO:0010181 - FMN binding [Evidence IEA]; GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)H:quinone oxidoreductase
translation: MAKVLVLYYSTYGHIETMAQAVAEGARSAGAEVDIKRVPETVPDGVARDNHFKLDQTAPIASVADLENYDAIIIGTGTRFGRLSSQMAAFLDQAGGLWARGALNGKVGAAFTSTATQHGGQETTLFSLITNLLHFGMVVVGLPYSHQGQMSLDEIVGGAPYGATTIAGGDGSRQPSKIELDGARHQGEIVAKTAAKLFA
SIO_010081: SAMIE_RS22710
subclass of: SO_0000673
so part of: SAMIE_RS22710
location: 47000..47599
location: region:47000-47599:1
so has part: feature:47000-47599:1:exon

WP_066522345.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47000-47599:1:exon

SAMIE_RS22715
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22715
pseudo: true
so part of: sequence
location: 47657..>48226
location: region:47657-48226:1
so has part: feature:47657-48226:1:exon
subclass of: SO_0000010

position:47657:1
position: 47657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48226:1
position: 48226
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47657-48226:1:exon

SAMIE_RS22715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008833472.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: YceI family protein
SIO_010081: SAMIE_RS22715
subclass of: SO_0000673
so part of: SAMIE_RS22715
location: 47657..>48226
location: region:47657-48226:1
so has part: feature:47657-48226:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:47657-48226:1:exon

SAMIE_RS22720
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22720
old locus tag: SAMIE_4000460
so part of: sequence
location: complement(48283..49047)
location: region:48283-49047:-1
so has part: feature:48283-49047:-1:exon
subclass of: SO_0000010

position:48283:-1
position: 48283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49047:-1
position: 49047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48283-49047:-1:exon

SAMIE_RS22720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22720
old locus tag: SAMIE_4000460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS6100 family transposase
translation: MTDFKWRHFQGDVILWAVRWYCRYPISYRDLEEMLAERGISVDHTTIYRWVQCYAPEMEKRLRWFWRRGFDPSWRLDETYVKVRGKWTYLYRAVDKRGDTIDFYLSPTRSAKAAKRFLGKALRGLKHWEKPATLNTDKAPSYGAAITELKREGKLDRETAHRQVKYLNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
SIO_010081: SAMIE_RS22720
subclass of: SO_0000673
so part of: SAMIE_RS22720
location: complement(48283..49047)
location: region:48283-49047:-1
so has part: feature:48283-49047:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:48283-49047:-1:exon

SAMIE_RS22730
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22730
old locus tag: SAMIE_4000470
pseudo: true
so part of: sequence
location: complement(<49110..49649)
location: region:49110-49649:-1
so has part: feature:49110-49649:-1:exon
subclass of: SO_0000010

position:49110:-1
position: 49110
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:49649:-1
position: 49649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49110-49649:-1:exon

SAMIE_RS22730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22730
old locus tag: SAMIE_4000470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000904895.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: SAMIE_RS22730
subclass of: SO_0000673
so part of: SAMIE_RS22730
location: complement(<49110..49649)
location: region:49110-49649:-1
so has part: feature:49110-49649:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:49110-49649:-1:exon

SAMIE_RS22735
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22735
old locus tag: SAMIE_4000480
so part of: sequence
location: 49775..52666
location: region:49775-52666:1
so has part: feature:49775-52666:1:exon
subclass of: SO_0000010

position:49775:1
position: 49775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52666:1
position: 52666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49775-52666:1:exon

SAMIE_RS22735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22735
old locus tag: SAMIE_4000480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010512303.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MPRRVTLTDRQREALLHLPVDQGELLRHYTLSDEDLGHIRQRRRAHNRFGFALQLCVLRYPGRVLAPGELIPAQVSDFIAAQLGLTSDDLLLYAAREETRHEHLADLRRIYGYRSFSGRGARDLREWIAREAEAATSNEDLARRFVAECRRTRTILPGSSTIERLCADALVEAERRIEDLIAHRITPTLSENLAHLLEDTVDGRVTRFVWLRQFEVGANSAAANRLMDRLEYLQRFDLPADLLDGVPAHRVTRLRRQGERYYADGMRDLPEDRRLAILAVCTLEWRSSLADVIVETHDRIVGRLYRASERLCNTRIADEKAAVRDTLKSFAEIGGALLGAQDDGTALDGIIATGPGWERFRTLVATASALTNVLAADPLSRVLDGYHRFRLYAPRMLRLLDMQAAPIATPLLAAVAMLRNGIKVDPPVDFLRPNSKWHRHLRAEPSGDHRLWEIAVLFHIRDAFRSGDIWLAGSRRYGDLKQLLVPPQAIEQTARLAVPLRPGEWLAERRARLDTRLKEFGRAARTGTIPGGIIENGKLHIDKLRADTPEGAEDLVLDLYQQLPPARITDLLLEVDERTGFSEAFTHLRTGAPCSDRIGLMNVLLAEGVNLGLRKMAAATNTHSFWELLRIARWHVEGSAYDRALAMIVEAHAALPMAAFWGQGQSASSDGQFFLATEQGEAMNLINAKYGNVPGLKGYSHVSDQYAPFATQVIPATVSEAPYILDGLLMNDAGRRVRQHFADTGGFTDHVFAACALLGYRFAPRIRDLPQKRLYAFTPNATPANVRALVGGKINEPLIERNWPDILRIMATIAAGIVAPSQILRKLASYPRQNELALALREVGRIERTLFMIDWILDAGLQRQAQIGLNKGEAHHALKRAISFHRRGEIRDRSGEGQHYRIAGMNLLAAIIIFWNTMKLGEVVNTRAASGTHIAPDLLAHVSPLGWEHINLTGEYRWPKSLA
SIO_010081: SAMIE_RS22735
subclass of: SO_0000673
so part of: SAMIE_RS22735
location: 49775..52666
location: region:49775-52666:1
so has part: feature:49775-52666:1:exon

WP_016746447.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49775-52666:1:exon

SAMIE_RS22740
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22740
pseudo: true
so part of: sequence
location: <52695..52811
location: region:52695-52811:1
so has part: feature:52695-52811:1:exon
subclass of: SO_0000010

position:52695:1
position: 52695
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:52811:1
position: 52811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52695-52811:1:exon

SAMIE_RS22740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22740
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016509640.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: SAMIE_RS22740
subclass of: SO_0000673
so part of: SAMIE_RS22740
location: <52695..52811
location: region:52695-52811:1
so has part: feature:52695-52811:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:52695-52811:1:exon

SAMIE_RS22745
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22745
old locus tag: SAMIE_4000490
so part of: sequence
location: 53041..53391
location: region:53041-53391:1
so has part: feature:53041-53391:1:exon
subclass of: SO_0000010

position:53041:1
position: 53041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53391:1
position: 53391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53041-53391:1:exon

SAMIE_RS22745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22745
old locus tag: SAMIE_4000490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016510868.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MHRKALRNISWIKGALKEFGRFPEDAQDQATDALTAIAEGDTPDIAKPMTGLGSGIWELAIKERGDAFRVIYALQLDDDIWVVHAFQKKSKSGIATPKQEIDLVRERIKRLKEALQ
SIO_010081: SAMIE_RS22745
subclass of: SO_0000673
so part of: SAMIE_RS22745
location: 53041..53391
location: region:53041-53391:1
so has part: feature:53041-53391:1:exon

WP_066704234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53041-53391:1:exon

SAMIE_RS22750
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22750
old locus tag: SAMIE_4000500
so part of: sequence
location: 53388..53726
location: region:53388-53726:1
so has part: feature:53388-53726:1:exon
subclass of: SO_0000010

position:53388:1
position: 53388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53726:1
position: 53726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53388-53726:1:exon

SAMIE_RS22750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22750
old locus tag: SAMIE_4000500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016510871.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MTDDDDFEMIRGTGNVYADLGMKEPEQRQLRAILAAEISKTLATDNLTVRAAEKITGVAAADFSRIRQSKLKGFTIDRLMTILDRLNRDVQVSVSVLPRKADGQAGFHLLPA
SIO_010081: SAMIE_RS22750
subclass of: SO_0000673
so part of: SAMIE_RS22750
location: 53388..53726
location: region:53388-53726:1
so has part: feature:53388-53726:1:exon

WP_066704232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53388-53726:1:exon

SAMIE_RS22755
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22755
old locus tag: SAMIE_4000510
so part of: sequence
location: 54060..54743
location: region:54060-54743:1
so has part: feature:54060-54743:1:exon
subclass of: SO_0000010

position:54060:1
position: 54060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54743:1
position: 54743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54060-54743:1:exon

SAMIE_RS22755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22755
old locus tag: SAMIE_4000510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008827686.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MKVITVISQKGGAGKTTLAIHLAAAGAGAGLTALILDTDPQATASHWSEWRGSSDLEVVDCASPPLLPRKLQQAAELGADLVVIDTPPHADIMAREACKVADLVLIPCRPQAFDLKAVEMTAELVQASGKPAFVLFMGGPQRAPTTYRDARELIEGSDGVAGMGVDVAPVMLTQRAIYHHSTAQGKTAIELEPEGKAAEEVAALWEWTSKQVNVSTRSRVNNERGAA
SIO_010081: SAMIE_RS22755
subclass of: SO_0000673
so part of: SAMIE_RS22755
location: 54060..54743
location: region:54060-54743:1
so has part: feature:54060-54743:1:exon

WP_066704229.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54060-54743:1:exon

SAMIE_RS22760
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22760
so part of: sequence
location: 54740..55006
location: region:54740-55006:1
so has part: feature:54740-55006:1:exon
subclass of: SO_0000010

position:54740:1
position: 54740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55006:1
position: 55006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54740-55006:1:exon

SAMIE_RS22760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22760
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010189082.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKFGAMKQQRAEKAGAIGDSPDQATATVATRAQTRQGKKAVSAYFSPEVSRGLNMLAAEQGTTLQALLGEAIDLLMRQHGKHPFGER
SIO_010081: SAMIE_RS22760
subclass of: SO_0000673
so part of: SAMIE_RS22760
location: 54740..55006
location: region:54740-55006:1
so has part: feature:54740-55006:1:exon

WP_066704224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54740-55006:1:exon

SAMIE_RS22765
type: Gene
subclass of: SO_0000704
RO_0002162: 135719
locus tag: SAMIE_RS22765
so part of: sequence
location: 55120..55311
location: region:55120-55311:1
so has part: feature:55120-55311:1:exon
subclass of: SO_0000010

position:55120:1
position: 55120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55311:1
position: 55311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55120-55311:1:exon

SAMIE_RS22765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135719
locus tag: SAMIE_RS22765
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008827688.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLPIEAPRRQRNRIGKKSIAGRFDPAVARAFAILAVKEDSTIEAMLTEAVLDILQKYNQPIEK
SIO_010081: SAMIE_RS22765
subclass of: SO_0000673
so part of: SAMIE_RS22765
location: 55120..55311
location: region:55120-55311:1
so has part: feature:55120-55311:1:exon

WP_010189081.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55120-55311:1:exon