Helicobacter apodemus strain SCJK1 plasmid unnamed, complete sequence.
type: Entry
definition: Helicobacter apodemus strain SCJK1 plasmid unnamed, complete sequence.
sequence version: NZ_CP021887.1
sequence date: 2023-06-18
sequence: sequence
division: CON
label: NZ_CP021887.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07204495
keyword: RefSeq
source: Helicobacter apodemus
organism: Helicobacter apodemus
taxonomy: Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP021887.1.\nBacteria and source DNA available from Seoul National University,\nCollege of Veterinary Medicine.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUN-2017\nAssembly Method :: RS HGAP Assembly v. v 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 477.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/18/2023 10:46:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,053\nCDSs (total) :: 2,002\nGenes (coding) :: 1,959\nCDSs (with protein) :: 1,959\nGenes (RNA) :: 51\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 39\nncRNAs :: 3\nPseudo Genes (total) :: 43\nCDSs (without protein) :: 43\nPseudo Genes (ambiguous residues) :: 0 of 43\nPseudo Genes (frameshifted) :: 35 of 43\nPseudo Genes (incomplete) :: 9 of 43\nPseudo Genes (internal stop) :: 1 of 43\nPseudo Genes (multiple problems) :: 2 of 43\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 33248
topology: circular
so has quality: SO_0000988
location: 1..33248
location: region:1-33248:1
RO_0002162: 135569

NZ_CP021887
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07204495
type: BioSample
SIO_000068: biosample

1
title: Complete genome of Helicobacter apodemus
author: Cho, S.
journal: Unpublished

2
title: Direct Submission
author: Cho, S.
journal: Submitted (10-JUN-2017) Veterinary Public Health, Seoul National University College of Veterinary Medicine, Gwanak, Seoul 08826, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33248:1
position: 33248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-33248:1:source
so part of: sequence
organism: Helicobacter apodemus
mol type: genomic DNA
strain: SCJK1
host: Apodemus agrarius
plasmid: unnamed
country: South Korea: Gangwondo
collection date: 2015-05-15

135569
type: Taxonomy
SIO_000068: taxonomy

CDV25_RS09905
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09905
old locus tag: CDV25_09865
so part of: sequence
location: join(32980..33248,1..715)
location: region:1-33248:1
so has part: feature:32980-33248:1:exon
so has part: feature:1-715:1:exon
subclass of: SO_0000010

82134478
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:32980-33248:1:exon

position:32980:1
position: 32980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-715:1:exon

position:715:1
position: 715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CDV25_RS09905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09905
old locus tag: CDV25_09865
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MKSFQFLTTRKIHHTPTSGAKLISLDYNYTKEYNCNYDEFRAIHLSSFWGLDFRYKGANLVANTPRNYIQKFKKSIFVFTSLLIPSFLLSASIPVVDTAANAQMATQNAKQIAEWAREATRWTDTVSHYQKQIQAYQSELLSKTGMRDSVSFLRDIKQIYSDFSKAGENIQSFYNNVLRDPQEFLSKKGSEIFGRYTSFDRCNFDFMSQSEKNICKMNLITYAAQVETYNQASKQMDTISATLKKLQDKLVNAKDIKESTDIGNAIQLEVAKIQIVKNQIDLANASYENQRKIQENIAMQEYSKSFNYKPQVSTKELMQKAREQNKQ
SIO_010081: CDV25_RS09905
subclass of: SO_0000673
so part of: CDV25_RS09905
location: join(32980..33248,1..715)
location: region:1-33248:1
so has part: feature:32980-33248:1:exon
so has part: feature:1-715:1:exon

WP_108911882.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32980-33248:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-715:1:exon

CDV25_RS09910
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09910
old locus tag: CDV25_09870
so part of: sequence
location: 712..1737
location: region:712-1737:1
so has part: feature:712-1737:1:exon
subclass of: SO_0000010

82134479
type: Gene
SIO_000068: ncbigene

position:712:1
position: 712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1737:1
position: 1737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:712-1737:1:exon

CDV25_RS09910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09910
old locus tag: CDV25_09870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006803307.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MNDLFQTLGYSTQQIIDAVRQIGTSDKLAELSVLFSIIITLVIMYKGYEVLMGKSQSPIRELTFDIAGKLLAITFALNIGGWLNLTISAMDGIYEWAGGGTKMYQTLDTMFANTTQLASTIWAKTSILQVPVSLAAMVLCYIGFTIAVIPTLSILIVTTFTQTLLVITAPIVFWLLIFKSTRNVFTQWIGLLLSNTLVILLVGLFLKVFIGEINGWITSLSQHIQTGSEVLSTSIFYVIASFVLVTMIISAKVFAEKIANVSMEAAMGGVMSNALSPASRLAGRALGYGAGQATNLASPLASMAGNYAAGAAKNIGAGAKLMGSGGYSFAKRMYERMRNES
SIO_010081: CDV25_RS09910
subclass of: SO_0000673
so part of: CDV25_RS09910
location: 712..1737
location: region:712-1737:1
so has part: feature:712-1737:1:exon

WP_108911883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:712-1737:1:exon

CDV25_RS10265
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS10265
so part of: sequence
location: 1727..1882
location: region:1727-1882:1
so has part: feature:1727-1882:1:exon
subclass of: SO_0000010

82134545
type: Gene
SIO_000068: ncbigene

position:1727:1
position: 1727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1882:1
position: 1882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1727-1882:1:exon

CDV25_RS10265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS10265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002809290.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNLKRLQLIFVFLFGVLFFSACSTKGQYDDFFNDKKGWIPVNKTITQELKQ
SIO_010081: CDV25_RS10265
subclass of: SO_0000673
so part of: CDV25_RS10265
location: 1727..1882
location: region:1727-1882:1
so has part: feature:1727-1882:1:exon

WP_162550513.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1727-1882:1:exon

CDV25_RS09915
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09915
old locus tag: CDV25_09875
so part of: sequence
location: 1985..2530
location: region:1985-2530:1
so has part: feature:1985-2530:1:exon
subclass of: SO_0000010

82134480
type: Gene
SIO_000068: ncbigene

position:1985:1
position: 1985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2530:1
position: 2530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1985-2530:1:exon

CDV25_RS09915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09915
old locus tag: CDV25_09875
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002869250.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rha family transcriptional regulator
translation: MSHSIIINQQEVQFNTLNHQIFCTSLDVARVFGKEHKSILRAIRSKIRNKEIQNFNEHNFAPVKYKDIKGEVRTAYNLTRDGFSFIAMGLTGRKADLWKVQFINAFNQMEQILQKEIRSPNPYLTDLMNLIYPHLPKEDYRIDVNITQSLNPQESKRIFTLNYLVDNRISKDSMTNTNKEK
SIO_010081: CDV25_RS09915
subclass of: SO_0000673
so part of: CDV25_RS09915
location: 1985..2530
location: region:1985-2530:1
so has part: feature:1985-2530:1:exon

WP_108911884.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1985-2530:1:exon

CDV25_RS09920
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09920
old locus tag: CDV25_09880
so part of: sequence
location: 2530..3201
location: region:2530-3201:1
so has part: feature:2530-3201:1:exon
subclass of: SO_0000010

82134481
type: Gene
SIO_000068: ncbigene

position:3201:1
position: 3201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2530-3201:1:exon

CDV25_RS09920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09920
old locus tag: CDV25_09880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012108065.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MKENKFNTNLALDYEASFRYLIEKSNQRAWIITFISIFITILSIIAVVLLTPLKTIEPYVIRVDNTTGMVDILTILDEKEITKNEALDKYFISTYVKAREGYYYELLNQDYLLTQLMSSEKVANEYRSWYEGENARDQILKNSNEVNVQILSIVLGESNGVKTSTIRAMIITKNLNTKATSQATKVITLSYDYLLARASEENRMLNPLGFKVLTYRVDEEVVR
SIO_010081: CDV25_RS09920
subclass of: SO_0000673
so part of: CDV25_RS09920
location: 2530..3201
location: region:2530-3201:1
so has part: feature:2530-3201:1:exon

WP_108911885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2530-3201:1:exon

CDV25_RS09925
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
gene: virB9
locus tag: CDV25_RS09925
old locus tag: CDV25_09885
so part of: sequence
location: 3198..4085
location: region:3198-4085:1
so has part: feature:3198-4085:1:exon
subclass of: SO_0000010

82134482
type: Gene
SIO_000068: ncbigene

position:3198:1
position: 3198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4085:1
position: 4085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3198-4085:1:exon

CDV25_RS09925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
gene: virB9
locus tag: CDV25_RS09925
old locus tag: CDV25_09885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002790208.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein VirB9
translation: MKKAILIALFLSDISLALNIPKASPFDKRITYAIYNANDVFLINAKNGYVSVLEFGIDERIINTATGFSDGWDLIERDNLLFIKPKAYKTQLLQTDNMGESQSSQEFIVDPNPNDWKTNLIVITNLNTYIFDLKLIKNNNATYKLSFSYPQKDLEMTREFLESQEQENIRTDLNKNTIPRNWDFTMKINKGSEDISPNFAYDDGVFTYLGFDNTKTFPVAFMYENGKESILNTHIKKDGNYEVLVIQKIAKQILLRSGDKVVGIFNNGYAKNPLRKTRETSNENIQREINKKGGK
SIO_010081: CDV25_RS09925
subclass of: SO_0000673
so part of: CDV25_RS09925
location: 3198..4085
location: region:3198-4085:1
so has part: feature:3198-4085:1:exon

WP_108911886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3198-4085:1:exon

CDV25_RS09930
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
gene: virB10
locus tag: CDV25_RS09930
old locus tag: CDV25_09890
so part of: sequence
location: 4157..5314
location: region:4157-5314:1
so has part: feature:4157-5314:1:exon
subclass of: SO_0000010

82134483
type: Gene
SIO_000068: ncbigene

position:4157:1
position: 4157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5314:1
position: 5314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4157-5314:1:exon

CDV25_RS09930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
gene: virB10
locus tag: CDV25_RS09930
old locus tag: CDV25_09890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002826433.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein VirB10
translation: MQNKEQSDLNFEDHISELGNQKNHLKKIQAYVIFAVGGLLLIVLIIYFLQSFLGNDSIEETPKEENKDLAQSVKTKDFIPPVPQIPQQTFNELIAESPKQIEAPLFETNIPKPRIVKGIGTTVITSSSNGNFMGNSNDKDFGESPNTVFEFGQNAATSNNNLQGGDFVGEVFTPTFAKVSEFDQNLLLPKGTYIGCALKTRLVSSIKGGIACIVSNDVYSANGNILLIEKGSTITGTFNAGQMDDGMDRLFVIWQEIKTPNNIIIPVYSGATDELGASGLQGWVDHHYLKRFGSAILLSMIDDSMAILASQLSKNNTNGNNYYNYTQNSRENFSNIADTALKKMIDIKPTLYKNQGDIVGVYVNRDIDFSKVYKLTRKRNVNYTR
SIO_010081: CDV25_RS09930
subclass of: SO_0000673
so part of: CDV25_RS09930
location: 4157..5314
location: region:4157-5314:1
so has part: feature:4157-5314:1:exon

WP_108911887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4157-5314:1:exon

CDV25_RS09935
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
gene: virB11
locus tag: CDV25_RS09935
old locus tag: CDV25_09895
so part of: sequence
location: 5295..6299
location: region:5295-6299:1
so has part: feature:5295-6299:1:exon
subclass of: SO_0000010

82134484
type: Gene
SIO_000068: ncbigene

position:5295:1
position: 5295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6299:1
position: 6299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5295-6299:1:exon

CDV25_RS09935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
gene: virB11
locus tag: CDV25_RS09935
old locus tag: CDV25_09895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012662268.1
GO component: GO:0043684 - type IV secretion system complex [Evidence IEA]
GO process: GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type DNA transfer ATPase VirB11
translation: MSITLDKFTKQYFGEFLKDDSINEICYNGDNKIWVQNSKGLWVYKDTKLDFEIAGHFATSAAAFKKDKIDVSRPILSCILVGGERMQIVIPPATKDEHISITIRKPSKTRFKMEDHVKSGLFEDLNADDKNKVKPSNEELIKLYQARDYQNFIAKAVGYGKNIIIAGETGSGKTTFMKTLIDFIPTEERIITIEDVEEIKFYEHKNYVQLFYPSEAKSTDFLNSATLLKSCLRMKPDRILLAELRGAETYDFINVLASGHGGSITSCHAGSPEETFTRLALMTLQNPQGQCVPFEIIQKTLKDLIDIVVHIHAHHGKRRISGIYFKEIEKTEES
SIO_010081: CDV25_RS09935
subclass of: SO_0000673
so part of: CDV25_RS09935
location: 5295..6299
location: region:5295-6299:1
so has part: feature:5295-6299:1:exon

WP_108911888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5295-6299:1:exon

CDV25_RS09940
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09940
old locus tag: CDV25_09900
so part of: sequence
location: 6299..6877
location: region:6299-6877:1
so has part: feature:6299-6877:1:exon
subclass of: SO_0000010

82134485
type: Gene
SIO_000068: ncbigene

position:6877:1
position: 6877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6299-6877:1:exon

CDV25_RS09940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09940
old locus tag: CDV25_09900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006803313.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQKEKRGIYNVTFNEKKSTPLDTDLEAIENAIIDYVVHYVKGWHNTKRDKGRGAEHIKLHLEPDSKGQITLEELLNLGNSIREYLKVFKEPYLEDINKNGKVYEWENDEGVRFRIATDKIKREGLIPPLSPSDEIIITFYSDRNLNKQMEFKNPKVTEYYAKQTPQKDKSFFQEKMQDFTINKSIKNKDLER
SIO_010081: CDV25_RS09940
subclass of: SO_0000673
so part of: CDV25_RS09940
location: 6299..6877
location: region:6299-6877:1
so has part: feature:6299-6877:1:exon

WP_108911889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6299-6877:1:exon

CDV25_RS09945
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09945
old locus tag: CDV25_09905
so part of: sequence
location: 6874..8685
location: region:6874-8685:1
so has part: feature:6874-8685:1:exon
subclass of: SO_0000010

82134486
type: Gene
SIO_000068: ncbigene

position:6874:1
position: 6874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8685:1
position: 8685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6874-8685:1:exon

CDV25_RS09945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09945
old locus tag: CDV25_09905
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002822838.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MMQNRTFKIIFIVIAGFILTYLLTPFVFFFLNKVKILRVLEIYNIHFTLQAITNHYPKIWLSLSISFAFVFSAFILLVLSLKSKKSQFGEARFANSAEIKKMNLLNDKGIIIGKYKGKFLRFSGQQFVALGAPTRSGKGVGIVIPNLLEWTESAVVQDIKQECFDYTSKYRKEILGQEVYLFNPFSRQTHRYNPLTYIDMSDKEHCDSQLMDLANILYPLDGDSTSKFFNGLAQNLFVGLCYMWRDLELNNTGKEFQRAFNLEIGEFNFYNILQLSKGFYIQNENNTIQGFDDTYNFLVHCEVLDGATKRRLETYFNISSDATKSGVMSSFNAPLVPFESETLKLSTETSDFDLRDLRKKKMTIYIGITPDQLTNAQFILNIFWSQLILLNTKELPQKNKDLKYSCLLLMDEFTAPGRIQILQTSVSFIAGYNLRLLTIYQSLSQLETPPPLGYGKEGAKTLLTNHACQIFYAPREQEDAEAISRILGNTTFQTSSRSINSGGSGGGSRSISEASRALMLPQELREMSFENELITIDSGKPILCNKAFYYSDSYFMDKFKAISKSLSSIKKIPTRGQLENAILQGECKVKIQIIGENNENNVA
SIO_010081: CDV25_RS09945
subclass of: SO_0000673
so part of: CDV25_RS09945
location: 6874..8685
location: region:6874-8685:1
so has part: feature:6874-8685:1:exon

WP_108911890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6874-8685:1:exon

CDV25_RS09950
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09950
old locus tag: CDV25_09910
so part of: sequence
location: 8666..9094
location: region:8666-9094:1
so has part: feature:8666-9094:1:exon
subclass of: SO_0000010

82134487
type: Gene
SIO_000068: ncbigene

position:8666:1
position: 8666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9094:1
position: 9094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8666-9094:1:exon

CDV25_RS09950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09950
old locus tag: CDV25_09910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006803315.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cag pathogenicity island Cag12 family protein
translation: MKTMSLSVLVALLIIGCSAPKPKRLDEGSAISINNALLEKQYNFVPKDSFLSSQNWTYQIVVEKKSIEDDFIKNELVTKTFLLAHNATKMILIGREDLIKDYKEYFLNNQVIIPIELQPINPYEEEINRVNILFFNNITGEE
SIO_010081: CDV25_RS09950
subclass of: SO_0000673
so part of: CDV25_RS09950
location: 8666..9094
location: region:8666-9094:1
so has part: feature:8666-9094:1:exon

WP_108911891.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8666-9094:1:exon

CDV25_RS09955
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09955
old locus tag: CDV25_09915
so part of: sequence
location: 9094..9840
location: region:9094-9840:1
so has part: feature:9094-9840:1:exon
subclass of: SO_0000010

82134488
type: Gene
SIO_000068: ncbigene

position:9840:1
position: 9840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9094-9840:1:exon

CDV25_RS09955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09955
old locus tag: CDV25_09915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006803316.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbM/KikA/MpfK family conjugal transfer protein
translation: MKKTLIVALIFGVISAEAIELELLSGDTRSACEAILCLASPVKPPECASAIAKYFSIKFKKPWQTLQARKNFLNLCPVDSSNDPEMYKYKNDILVHLDGECSVFSLNNRIERKVIRIDRVCTNNGVETICNDVNVYGFRINPEPTNSCRLLSSSAYTDYRLKYTCDAKFYEKEEWERGYELKEVSQEIYNTLPLSQKEQKEKLIKISNYEYSQLPKNQRKRIGFQYYRIGIVYYQKIAIKKDCWINEK
SIO_010081: CDV25_RS09955
subclass of: SO_0000673
so part of: CDV25_RS09955
location: 9094..9840
location: region:9094-9840:1
so has part: feature:9094-9840:1:exon

WP_108911892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9094-9840:1:exon

CDV25_RS09960
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09960
old locus tag: CDV25_09920
so part of: sequence
location: 9837..10628
location: region:9837-10628:1
so has part: feature:9837-10628:1:exon
subclass of: SO_0000010

82134489
type: Gene
SIO_000068: ncbigene

position:9837:1
position: 9837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10628:1
position: 10628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9837-10628:1:exon

CDV25_RS09960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09960
old locus tag: CDV25_09920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002779641.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTMNENPSENLFEIIDDTDNQEIAMTNFNELLEKFDHTMKAINAKIHIGKQNSQNNTEDGIFKDLEDNFIELDNTFLTLIAYFKNPPSDEEKEFINKTTSIKKTMEDLAKFANEIQKISLDEKLKSYNEQINQFCEIVEYKLSYNAQNYNNFLDDFVADGKQTLHTFSEIFIKMTKNAKLFFMIFSFASLGLGVIIGTLVFLSYIKYLEYEKLKERVTTITQGLATISVDKEGKSLTLSFAKNNKTIFTENKNSIQITLQGGE
SIO_010081: CDV25_RS09960
subclass of: SO_0000673
so part of: CDV25_RS09960
location: 9837..10628
location: region:9837-10628:1
so has part: feature:9837-10628:1:exon

WP_239056461.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9837-10628:1:exon

CDV25_RS09965
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09965
old locus tag: CDV25_09925
so part of: sequence
location: 10692..11312
location: region:10692-11312:1
so has part: feature:10692-11312:1:exon
subclass of: SO_0000010

82134490
type: Gene
SIO_000068: ncbigene

position:10692:1
position: 10692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11312:1
position: 11312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10692-11312:1:exon

CDV25_RS09965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09965
old locus tag: CDV25_09925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002801287.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAFGRLVNDKIVIDTNNALNYKNKEGEIQQRKIDTALIDVIKEAGAVAAMEHGSVLFSAKINSEWKNFFVNRDEKTHNIVLKPTNSKNRDDFIYVNSNTNEQGYFYYTINQKRESAKELIEGVGITEHQNQDGSKSHYLETNVRLYNEELKKELKERGGEFVAIISNAGIKVVNETEMKAQKQEQQRQQTQEIKEPEKTQDKGIER
SIO_010081: CDV25_RS09965
subclass of: SO_0000673
so part of: CDV25_RS09965
location: 10692..11312
location: region:10692-11312:1
so has part: feature:10692-11312:1:exon

WP_108911894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10692-11312:1:exon

CDV25_RS09970
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09970
old locus tag: CDV25_09930
so part of: sequence
location: 11433..13622
location: region:11433-13622:1
so has part: feature:11433-13622:1:exon
subclass of: SO_0000010

82134491
type: Gene
SIO_000068: ncbigene

position:11433:1
position: 11433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13622:1
position: 13622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11433-13622:1:exon

CDV25_RS09970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09970
old locus tag: CDV25_09930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004276310.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006265 - DNA topological change [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA topoisomerase 3
translation: MRLFIAEKPELGRAIAEGLDGNYKSGEGYIQKGNDIVTWAFGHILELAKPEEYDDKYKIWKLEDLPLPIKEFKYLPKKESKKQLKIICDLINNDKITSIVNCGDADDEGQILIDEIVLYSKTSKPVFRVLINDLTPKAVKEEITKIQPNENFKGMSERGFARSQADWIVGINLTRAYTIIARQNHFDGVLSVGRVQTPILGLVVARDKEFESFKSINYYSLLGHFEVNNSIFKARLKTEEKILDENLAKEIKNTCENQNASINLTTEHKKEYPPLPYNLLVLQAECAKIFGFSPDKTLQITQSLREKHKAITYNRSDCQYLPETMFEESPKILNSIKENLNNDEIKALIAGSDIKIKSKAFNDANISAHYGIIPTQNKISSQLTQEELVVYDLIAKRFIIQFFHPREYQTTTINLEINQRVFTATQNKTIKNGFRSLWQNIDSDKEEEQDSDKNEYDLSNLKDNDIAKCSLIQIEKKQTKPRPYYTMTTLLKDLNSVAKYVTDEKIKKLLIEKDKDKKGESGGIGTPATRSNHIKTLIERGYIEVSKDKKQIVKSTKKGKDLISLSPKSLATPDMTALWFEQQKMIETSELQRKQFLEEVTKEVINEIQRINNNQDFKILEDESKPKIQCPQCNKGFLQKRKGKYGDFWGCSEFKQGCKAIYPDNKGTPNLETKQANNDTTHKCPQCNKGFLQRMQNKKGSWWWGCSEFKQGCKAMYYDDNGKPKIQSN
SIO_010081: CDV25_RS09970
subclass of: SO_0000673
so part of: CDV25_RS09970
location: 11433..13622
location: region:11433-13622:1
so has part: feature:11433-13622:1:exon

WP_108911895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11433-13622:1:exon

CDV25_RS09975
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09975
old locus tag: CDV25_09935
so part of: sequence
location: 13774..14064
location: region:13774-14064:1
so has part: feature:13774-14064:1:exon
subclass of: SO_0000010

82134492
type: Gene
SIO_000068: ncbigene

position:13774:1
position: 13774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14064:1
position: 14064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13774-14064:1:exon

CDV25_RS09975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09975
old locus tag: CDV25_09935
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002857818.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EexN family lipoprotein
translation: MKNIIKLSLLGAAVAGVFSACSEPKSIEYYSDPKNAKELEAKLKECKKNANSAQTDTECANAYHAEYSKSFNYKPQVSTKEFMQKAREQNKDFELK
SIO_010081: CDV25_RS09975
subclass of: SO_0000673
so part of: CDV25_RS09975
location: 13774..14064
location: region:13774-14064:1
so has part: feature:13774-14064:1:exon

WP_108911896.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13774-14064:1:exon

CDV25_RS09980
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09980
old locus tag: CDV25_09940
so part of: sequence
location: 14268..14831
location: region:14268-14831:1
so has part: feature:14268-14831:1:exon
subclass of: SO_0000010

82134493
type: Gene
SIO_000068: ncbigene

position:14268:1
position: 14268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14831:1
position: 14831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14268-14831:1:exon

CDV25_RS09980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09980
old locus tag: CDV25_09940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006802367.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMISIINKKGGVGKTPFAFSIAKDLGYFLQSNDNSIIEKIYPQKAKILPTPKKINDCVYDFGGFVEKGILDIVKASNKIIIPCTSNYNSLLRTLETLNEIGNNDKVCILVTDFRDEKEKNQICETLESNFTDLNLFFFKFSKIIENSMSSGASFTELYSENNLSRLSYTNFFNEYQRLLDFIRKDKQ
SIO_010081: CDV25_RS09980
subclass of: SO_0000673
so part of: CDV25_RS09980
location: 14268..14831
location: region:14268-14831:1
so has part: feature:14268-14831:1:exon

WP_108911897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14268-14831:1:exon

CDV25_RS09985
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09985
old locus tag: CDV25_09945
so part of: sequence
location: 14831..15094
location: region:14831-15094:1
so has part: feature:14831-15094:1:exon
subclass of: SO_0000010

82134494
type: Gene
SIO_000068: ncbigene

position:15094:1
position: 15094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14831-15094:1:exon

CDV25_RS09985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09985
old locus tag: CDV25_09945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002804244.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKKPFTIAEALNSESTSQKTYGKADKKSSGRKSIDKELRREHLVTCRLNQKEYEILKQLIEIELSSDASAYIRRLILKEARALNIN
SIO_010081: CDV25_RS09985
subclass of: SO_0000673
so part of: CDV25_RS09985
location: 14831..15094
location: region:14831-15094:1
so has part: feature:14831-15094:1:exon

WP_108911898.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14831-15094:1:exon

CDV25_RS09990
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS09990
old locus tag: CDV25_09950
so part of: sequence
location: 15142..20934
location: region:15142-20934:1
so has part: feature:15142-20934:1:exon
subclass of: SO_0000010

82134495
type: Gene
SIO_000068: ncbigene

position:15142:1
position: 15142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20934:1
position: 20934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15142-20934:1:exon

CDV25_RS09990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS09990
old locus tag: CDV25_09950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002934571.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SNF2-related protein
translation: MMRKTKKQIENEKYGNKSLFDFIELEFSQGEENEQQGRELSQHREVTGNIERIGISSNSSSVDRQENSTIQLDNTREMGRNLSKHNQESGNVRSNDISNSTNRNGTRNFREQGSRAEENGRANRYGDTSRRTNQSQSIHRDRTSNLFSFISRNDDQRQETRTGGNNQQPILELTARDNGLQGGNLKSGQKLDFISDDEIYLGSLKDRFQKNIQAIKLLKTIEQENRYATKQEQEVLNKFSGWGGIPQAFDHYNKEWEKEFKELINTLDYTEHEKAKTSTLDAFYTPKIIIDTIYQGLNQLGFNDDDHTKEIFEPSAGIGSFLSYAKNYSDKYHFTCIELDTISAKILKNLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDSTLNKSSVHNYFISNAIKNLKEDGIAAFVVSSYFLDSKNNAIRSYIAEQATFLGAVRLPNNAFKKRANTEVTTDIIFFKKGKDLNMDKSWLESVEYYDNRFDEAAKRDMNPDIFNDFRINEYFKNNPQNILGKMDIKTSQYGKDLECLDDGIDLKIALENFIKTLPKNIYKYRETKIKLSYYRIDRESPEYEKYSKALSKLKDGNYFEYNNEIYMKIRSDDELVFSKSVLNEHDKRRIKKLIAIRDQFNTLIEYEKNEPNDLLVENQRKYLNKLYDEFVAKEGYLNRDANKKAFREDVEANKILALEKNYNAGISKNVALKEGIDPVAPSAAKADIFFKRTINAKKEIKIANPKEALIASINEYGRIDLKFLEINLNQPLEETLKSLEQDKLIFKDHDNPANYILAEKYLSGNVKTKYKEVKKLVEEGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKYYKDFIEETLQITPKDYDLFLMKKTGEWNFKGNRYILSSYIRSQYATERMNCFDLIEHGLLRKPIRIYDKKVDQWGKEYRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLENIYNERFNTNVEPQYNGEHLELPNFNTNIKLKKHQKNAIYRAIQENSIIFDHQVGAGKTLVAICSVMEQKRMGLLNKPLIIVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNREKFFSKIATNNYDAIIMTHSQFKLIPAPYEVIKRQFEEDINILEQTLKRKKDDENVMRYSVKDLEKRIENFKVKLQDLQTAHKKSKAIDFSELGIDALIVDEAHEFKNLLITTSMGDISGLGNLKGSQKAYDLYCKTQYIHKQNKKLYFLTGTPISNSITELYTLQRYIQPNILKEKGIESFDAWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTNTDIMKYQKDFVPKLYNDKPINVIAPRSEAIAEFIGIQDENGNWNEGSIVWRMENQSEDISKNNLLACTTDARKAGLDFRLINPYYDDYKDSKINKLIENIYNEYNIWNDDKGTQLIFCDLSTPKQHSQKVSLNNNTSISKLEKEEEFVNINETIEQTEEENNKSLDELLAEQAKFDVYTDILKKLVSKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTNVQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDARMWQVIESKARSIEQFRKSGADARTLEDITSGAADAAEMKAEATGNPLILLQVQLNNDLRQEEMLYSGYKRQIHNNEESLKNNISRINYLQKNIGIYTTLKSIVDSNTNEHFQGKYYEIQDDVKTIAKDFIILKEDNSDSNKKKQKEVELIFNKNIEAISKDYHKEYKILEYKGLLISGERTSLDTLSFYISTLDGTFIEPENLVYKKDSQILPLANQVSFRGFITKVNNFYNDLERLISSKDSQIKKLETEITELKSITGDNTPAYKRKDYLEALREDNRIVMNEIEKMSKQKDYKSAFIPKSTRILESVKNKPIQDLER
SIO_010081: CDV25_RS09990
subclass of: SO_0000673
so part of: CDV25_RS09990
location: 15142..20934
location: region:15142-20934:1
so has part: feature:15142-20934:1:exon

WP_108911911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15142-20934:1:exon

CDV25_RS09995
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
gene: mobP1
locus tag: CDV25_RS09995
old locus tag: CDV25_09955
so part of: sequence
location: complement(21097..22491)
location: region:21097-22491:-1
so has part: feature:21097-22491:-1:exon
subclass of: SO_0000010

82134496
type: Gene
SIO_000068: ncbigene

position:21097:-1
position: 21097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22491:-1
position: 22491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21097-22491:-1:exon

CDV25_RS09995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
gene: mobP1
locus tag: CDV25_RS09995
old locus tag: CDV25_09955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002934573.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobP1 family relaxase
translation: MSRFKIFDDEIIARKVFTKIENASKLPLNYINKNKDTYVKDKTGKLINKNMFRKNTEVVVKITSGSKNLQALSRHINYISRDGNVELISSDFDRYIGKDETLEVKKIFKNEGSPIPLYKEGAKEKRHTINMVFSMKKHFTTPKEKLQQAAITSLKRMYPNNFFVVAFHNDTDNPHCHVCLKVADKNGKRINPRKSDLASLRTEFAKALNELGIEAKATNKQVKNQEYLVESDRNISSPSPHQNQASKNKMHYYQVMDFGQGNYKFSTDKNAKKSYYVSYKTKKGITTIWGQDLERVVKDNKVLRGEYARFKIVGQEDYEIRKKVKINNKWQEVSKILKKPIWDVSVIGREKELKQISRIAKTAKKYKIIQDKGMNNERDYTKQYRQRVLQELGNKSIRRGDVAQKRDSMRVLSKQPMVYDAKRTQMLLHINALNQLQQGERRRTNNIVRWTNSGNNEVARGSKP
SIO_010081: CDV25_RS09995
subclass of: SO_0000673
so part of: CDV25_RS09995
location: complement(21097..22491)
location: region:21097-22491:-1
so has part: feature:21097-22491:-1:exon

WP_108911899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21097-22491:-1:exon

CDV25_RS10000
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS10000
old locus tag: CDV25_09960
so part of: sequence
location: complement(22495..23022)
location: region:22495-23022:-1
so has part: feature:22495-23022:-1:exon
subclass of: SO_0000010

82134497
type: Gene
SIO_000068: ncbigene

position:22495:-1
position: 22495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23022:-1
position: 23022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22495-23022:-1:exon

CDV25_RS10000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS10000
old locus tag: CDV25_09960
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKYLLTIETNNFEYLNKIKLETKSSINRIINYIIKVYSQNNNENFELISNPINENKNMKEIRIKLTDDEFNLLKEISLSNAFRSVSKQAKFTLINSLNKNKLFTNIEIDEFIKTRTEINAIGKNIYQLLKIIRGKNLVKINDDNLKNTINDIRNKIDILSDILGKIIEVNNQRI
SIO_010081: CDV25_RS10000
subclass of: SO_0000673
so part of: CDV25_RS10000
location: complement(22495..23022)
location: region:22495-23022:-1
so has part: feature:22495-23022:-1:exon

WP_108911900.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22495-23022:-1:exon

CDV25_RS10005
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS10005
old locus tag: CDV25_09965
so part of: sequence
location: 23234..23515
location: region:23234-23515:1
so has part: feature:23234-23515:1:exon
subclass of: SO_0000010

82134498
type: Gene
SIO_000068: ncbigene

position:23234:1
position: 23234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23515:1
position: 23515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23234-23515:1:exon

CDV25_RS10005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS10005
old locus tag: CDV25_09965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002839419.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLQESKMIEDLKREYDEKIKKLRQKEKEKKESIYKKLSMALLKDFETCGNFIDEFNILIKKLDCKNTKIAMDKVNSLYDFNKNTDTIENAKNN
SIO_010081: CDV25_RS10005
subclass of: SO_0000673
so part of: CDV25_RS10005
location: 23234..23515
location: region:23234-23515:1
so has part: feature:23234-23515:1:exon

WP_108911901.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23234-23515:1:exon

CDV25_RS10010
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS10010
old locus tag: CDV25_09970
so part of: sequence
location: 23540..24154
location: region:23540-24154:1
so has part: feature:23540-24154:1:exon
subclass of: SO_0000010

82134499
type: Gene
SIO_000068: ncbigene

position:23540:1
position: 23540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24154:1
position: 24154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23540-24154:1:exon

CDV25_RS10010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS10010
old locus tag: CDV25_09970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002864057.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NTPase
translation: MEKIYSYKIKVTDVSKLNDHYKEAIQEGTYEDEDIDKFFNTIKTFDVAESLLKKDFSNQFIEFEIITDTENIPLKVRLGDKNFQKGIQHLINLGSSKINKENINPQVEKEINKQLDGYKPKTYDKMLDGTFNALKNLSEIANKDLGLMILEFSDSFLKARENHQQNPEKESFFKQKMNEFFKKKLNKKQFDKEITTNKTLSMNR
SIO_010081: CDV25_RS10010
subclass of: SO_0000673
so part of: CDV25_RS10010
location: 23540..24154
location: region:23540-24154:1
so has part: feature:23540-24154:1:exon

WP_108911902.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23540-24154:1:exon

CDV25_RS10015
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS10015
old locus tag: CDV25_09975
so part of: sequence
location: 24162..25385
location: region:24162-25385:1
so has part: feature:24162-25385:1:exon
subclass of: SO_0000010

82134500
type: Gene
SIO_000068: ncbigene

position:24162:1
position: 24162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25385:1
position: 25385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24162-25385:1:exon

CDV25_RS10015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS10015
old locus tag: CDV25_09975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002823310.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5710 domain-containing protein
translation: MPQKRIYLYVPFKDKEKARLLGAMWDDKEKKWFAPKFLDKNIFTQWLHPPHHHKKEFLFDEQEILSTFKFALEKYGLIIEGLPIMDGKIHRVKTTTDRGRETSGAYSGFLNEYPAGFIQNFKTNVKENWKMPLEKAKQNITNYQASNQKDFNISPNNKQDILEIQQKTALKIEEEYNQANWAYSNHPYLKKKGFSENFYLKQDKRGSLLIPLRDENNKIWSVQRIFPNGDKIIGIIKTKEEKEQGIEYSARKSGCFHIIGAKTLEHCKEFIITEGFATAATIHKALNKPVIMGVDAGNLLKIVEILKRKFNDIPITLIADNDRKRELKGLPNIGIKSAREIQQQFSDIKIIIPQINDKEAEQGMSDFNDIFLAKGIDEVKKQLEIIDFQKKLKTFKITSYKKQELTR
SIO_010081: CDV25_RS10015
subclass of: SO_0000673
so part of: CDV25_RS10015
location: 24162..25385
location: region:24162-25385:1
so has part: feature:24162-25385:1:exon

WP_108911903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24162-25385:1:exon

CDV25_RS10020
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS10020
old locus tag: CDV25_09980
so part of: sequence
location: 25819..26037
location: region:25819-26037:1
so has part: feature:25819-26037:1:exon
subclass of: SO_0000010

82134501
type: Gene
SIO_000068: ncbigene

position:25819:1
position: 25819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26037:1
position: 26037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25819-26037:1:exon

CDV25_RS10020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS10020
old locus tag: CDV25_09980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002818418.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system HicB family antitoxin
translation: MLLNVIIEKDKDGYFARILELEGCVSQGNTYEEALINIKEAGELYLESLKSEEKRTIENKITSIVPMVLANA
SIO_010081: CDV25_RS10020
subclass of: SO_0000673
so part of: CDV25_RS10020
location: 25819..26037
location: region:25819-26037:1
so has part: feature:25819-26037:1:exon

WP_108911904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25819-26037:1:exon

CDV25_RS10025
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS10025
old locus tag: CDV25_09985
so part of: sequence
location: 26030..26233
location: region:26030-26233:1
so has part: feature:26030-26233:1:exon
subclass of: SO_0000010

82134502
type: Gene
SIO_000068: ncbigene

position:26030:1
position: 26030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26233:1
position: 26233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26030-26233:1:exon

CDV25_RS10025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS10025
old locus tag: CDV25_09985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002779783.1
GO function: GO:0003729 - mRNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system HicA family toxin
translation: MPELPKITAKEAEKLLLQSGFLIDRQKGSHRIYKKVSHRIVIPHHSGEILHPKIIKQLFEIIEATKD
SIO_010081: CDV25_RS10025
subclass of: SO_0000673
so part of: CDV25_RS10025
location: 26030..26233
location: region:26030-26233:1
so has part: feature:26030-26233:1:exon

WP_108911905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26030-26233:1:exon

CDV25_RS10030
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS10030
old locus tag: CDV25_09990
so part of: sequence
location: 26235..28028
location: region:26235-28028:1
so has part: feature:26235-28028:1:exon
subclass of: SO_0000010

82134503
type: Gene
SIO_000068: ncbigene

position:26235:1
position: 26235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28028:1
position: 28028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26235-28028:1:exon

CDV25_RS10030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS10030
old locus tag: CDV25_09990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002835057.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MPKRNTIDTITLGIFSDENVSVICEDTIKLERDSVAVLSGNSEVGKSFLALKACANAINDGLKPFFWSIEDKSQAILERIKNIENFYPFHTVELEFSNDLPKTDKNPIDCLREELNELKDCDLIVIDTFSAFFSILGFKDQNNQNDVQNFFNVLTDIAKSNKQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFQKGENKNSTTYRLLEVLKDNNNINAGEFQKTIKVLQNSSIDEPLIKDVKVENIHNHTLEIINKKDISAVSVHDLAKGYVTMNENRGIFYLSSRKLIDTNFYKVFKENDNKIEFEMTNSNGSSYTITLKNSLLTQTHRNILDALFLYIKKNVDTSVIKRHQEKFWDMEVRLEPYKFLKQYLNKAPSNYSWLKQKFIEISRFAYDLAFTQNIEAKDKQTTTQRDKGILMFDSVERITKENGVIVSVFVLTVRREYIKRLETESTLSYDDGLSRILIDLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYRFYKENSIISRQKKEIIKLKDKLIEFGINIYGKGVEFAEYDDEFFYNKYKNENDLIFIYENNNRVKRYIKRNDPMNQLNTKNNKFLLQKSLFD
SIO_010081: CDV25_RS10030
subclass of: SO_0000673
so part of: CDV25_RS10030
location: 26235..28028
location: region:26235-28028:1
so has part: feature:26235-28028:1:exon

WP_108911906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26235-28028:1:exon

CDV25_RS10035
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS10035
old locus tag: CDV25_09995
so part of: sequence
location: complement(28169..28783)
location: region:28169-28783:-1
so has part: feature:28169-28783:-1:exon
subclass of: SO_0000010

82134504
type: Gene
SIO_000068: ncbigene

position:28169:-1
position: 28169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28783:-1
position: 28783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28169-28783:-1:exon

CDV25_RS10035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS10035
old locus tag: CDV25_09995
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002809050.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIYLDEILEVKISSTKSQEKRKIKDLKQKLKSGDLLIATELSRLGRSMLEIINLVLEFNANNIKFLFLRQMELSNFNNPASKLILSVYAYLAENERELISQRTKAGLENARASGKKLGRPMGTLNSIYDKDTEKIQILLEKNLPIKSIWKLLYADSGKSYDSLLWFVKQRKLKLD
SIO_010081: CDV25_RS10035
subclass of: SO_0000673
so part of: CDV25_RS10035
location: complement(28169..28783)
location: region:28169-28783:-1
so has part: feature:28169-28783:-1:exon

WP_108911912.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28169-28783:-1:exon

CDV25_RS10040
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS10040
old locus tag: CDV25_10000
so part of: sequence
location: 28955..29218
location: region:28955-29218:1
so has part: feature:28955-29218:1:exon
subclass of: SO_0000010

82134505
type: Gene
SIO_000068: ncbigene

position:28955:1
position: 28955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29218:1
position: 29218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28955-29218:1:exon

CDV25_RS10040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS10040
old locus tag: CDV25_10000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002828964.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbC/VirB2 family protein
translation: MKTKLLLLILLSPMIVLAAGGIDKVNTFMQNLGTALYAIGAIVLTIAFMWAGFKVMFQGQTLREVAPVFIGGVLVGSASAIAGYIIS
SIO_010081: CDV25_RS10040
subclass of: SO_0000673
so part of: CDV25_RS10040
location: 28955..29218
location: region:28955-29218:1
so has part: feature:28955-29218:1:exon

WP_108911907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28955-29218:1:exon

CDV25_RS10045
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS10045
old locus tag: CDV25_10005
so part of: sequence
location: 29236..32004
location: region:29236-32004:1
so has part: feature:29236-32004:1:exon
subclass of: SO_0000010

82134506
type: Gene
SIO_000068: ncbigene

position:29236:1
position: 29236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32004:1
position: 32004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29236-32004:1:exon

CDV25_RS10045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS10045
old locus tag: CDV25_10005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002788503.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB4 family type IV secretion/conjugal transfer ATPase
translation: MQKNPLFKGLTRPPMIFGVPITPFIVAMGGIFLLAFYSQNIFLLILAIPAFFIMKAMTKKDDFIFRLMFLKIRFFSNPASKNHYKVKTYNVSSYRQIPQNSDLPKISVFGLHTEPNFEKLIPFSSLITDSVVITKNYLLLSTWEVSGISFEVEEDNELDSKNNLLNMLFKSFANEPVSFYFHNCRYSIEDKLTSKFNNTFLEEIDRKYYESFKQQGTLRKNSLYLTLIFNPLKIKIEKTTFMKSSFENKRKMISSFLAKFSEFTDRLETNIKDFNPKRLKTYSKDDKTYSQQLEFYNYLLGGRFNPVRVLPSPIDQYLNGNLQNIQFGSETIQLNGNNSTKRFARAIEIKDYTNETFAGILDVLMYLNIDYTITQSFSPIPRIDAKSAISKQKKQLIATEDDGFSQVAQIDEALDQLTNGEISFGKYHFSILIYGDTIQECKDNTNEVITRMNELGFGVALATIALPATFFAQLPSNFAIRPRINLISSMNFSSLIALHNFSMGKRDKNCWGDAVSILKTPNKQPYYFNFHQSSGANKNDFGELFLANTLILGQSGGGKTVFMNFIVDQMLKYANKDTFPDDIPQENRRFTAVYLDKDKGALGNILCAGGRYISIENGKPTGFNPFMIESTQENIRQLQSLIKLLVTRNNEILTTREEEMLNNAINSVMRGFEKEERKYPISLLLENLTENVDDDNSLKSRLTLFKRGKPFGWVFDNEFDNLDFPDDINLFGIDGTEFLDDKDVSGILSYYILWRVMSLADGRRLCIDIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSLEDFLKLKNAKTLIEQSATMVFLPNPKAKEEEYVNGVGLSYDEYMIIKGFNPTKRQFLIKRQDEKVIATLDLSSLGSENLKILSTGTSYIDTIEKIFAQDKSLDEKVKELKEFYRNS
SIO_010081: CDV25_RS10045
subclass of: SO_0000673
so part of: CDV25_RS10045
location: 29236..32004
location: region:29236-32004:1
so has part: feature:29236-32004:1:exon

WP_108911908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29236-32004:1:exon

CDV25_RS10050
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS10050
old locus tag: CDV25_10010
so part of: sequence
location: 32016..32540
location: region:32016-32540:1
so has part: feature:32016-32540:1:exon
subclass of: SO_0000010

82134507
type: Gene
SIO_000068: ncbigene

position:32016:1
position: 32016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32540:1
position: 32540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32016-32540:1:exon

CDV25_RS10050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS10050
old locus tag: CDV25_10010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002869250.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rha family transcriptional regulator
translation: MSHSIIINQQEVQFNTLNHQIFCTSLDVARVFGKEHKSILRAIRSKIRNKEIQNFNEHNFAPVKYKDIKGEVRTAYNLTRDGFSFIAMGLTGRKADLWKVQFINAFNQMEQILQKEIRSPNPYLTDLMNLIYPHLPKEDYRIDVNITQSLNPQESKRIFTLNYLVDNRNQIKRS
SIO_010081: CDV25_RS10050
subclass of: SO_0000673
so part of: CDV25_RS10050
location: 32016..32540
location: region:32016-32540:1
so has part: feature:32016-32540:1:exon

WP_108911909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32016-32540:1:exon

CDV25_RS10055
type: Gene
subclass of: SO_0000704
RO_0002162: 135569
locus tag: CDV25_RS10055
old locus tag: CDV25_10015
so part of: sequence
location: 32545..32970
location: region:32545-32970:1
so has part: feature:32545-32970:1:exon
subclass of: SO_0000010

82134508
type: Gene
SIO_000068: ncbigene

position:32545:1
position: 32545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32970:1
position: 32970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32545-32970:1:exon

CDV25_RS10055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 135569
locus tag: CDV25_RS10055
old locus tag: CDV25_10015
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: single-stranded DNA-binding protein
translation: MNNVNLIGYLGRDFEVGTTGNGKVYAKNSLAITKKWKNERGNEESSTTWIPIVLFGKSAESASMHIKKGSQFACSGELSSSQYADEAGNIKTILNVIVSKFYWLGKKDKENTKQITQTPPKEPNIEYEHSITNIESEEIPF
SIO_010081: CDV25_RS10055
subclass of: SO_0000673
so part of: CDV25_RS10055
location: 32545..32970
location: region:32545-32970:1
so has part: feature:32545-32970:1:exon

WP_108911910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32545-32970:1:exon