Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia.
Nocardia cyriacigeorgica MDA3349 complete genome
Submitted (12-FEB-2018) BioSciences, Rice University, 6100 Main Street, Houston, TX 77005, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP026745.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 43.0x\nSequencing Technology :: PacBio; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 01:36:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,891\nCDSs (total) :: 5,828\nGenes (coding) :: 5,746\nCDSs (with protein) :: 5,746\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 82\nCDSs (without protein) :: 82\nPseudo Genes (ambiguous residues) :: 0 of 82\nPseudo Genes (frameshifted) :: 24 of 82\nPseudo Genes (incomplete) :: 65 of 82\nPseudo Genes (internal stop) :: 6 of 82\nPseudo Genes (multiple problems) :: 11 of 82\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018514039.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076611765.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013160158.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_017835732.1
COORDINATES: protein motif:HMM:NF025063.2
COORDINATES: similar to AA sequence:RefSeq:WP_018890159.1
COORDINATES: similar to AA sequence:RefSeq:WP_003967443.1
GO:0006885 - regulation of pH [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016397450.1
phosphate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018539333.1
iron export ABC transporter permease subunit FetB
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_018636504.1
COORDINATES: similar to AA sequence:RefSeq:WP_003907436.1
COORDINATES: protein motif:HMM:NF024777.2
LamG-like jellyroll fold domain-containing protein
COORDINATES: protein motif:HMM:NF015996.2
COORDINATES: similar to AA sequence:RefSeq:WP_017568655.1
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF015722.2
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: protein motif:HMM:NF014114.2
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: similar to AA sequence:RefSeq:WP_005448034.1
GO:0008832 - dGTPase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0016793 - triphosphoric monoester hydrolase activity [Evidence IEA]
GO:0006203 - dGTP catabolic process [Evidence IEA]
deoxyguanosinetriphosphate triphosphohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_019066449.1
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011212316.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212315.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212314.1
COORDINATES: similar to AA sequence:RefSeq:WP_020171073.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_011212311.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212310.1
COORDINATES: similar to AA sequence:RefSeq:WP_003415982.1
COORDINATES: protein motif:HMM:NF022344.2
COORDINATES: similar to AA sequence:RefSeq:WP_011212307.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212306.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212301.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212300.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172187.1
COORDINATES: similar to AA sequence:RefSeq:WP_011856870.1
COORDINATES: similar to AA sequence:RefSeq:WP_006247232.1
COORDINATES: similar to AA sequence:RefSeq:WP_009716782.1
COORDINATES: similar to AA sequence:RefSeq:WP_010145774.1
COORDINATES: similar to AA sequence:RefSeq:WP_018555301.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212219.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212217.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011212215.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212214.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212213.1
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_011212211.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212210.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212209.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011212208.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212367.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212366.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212365.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212364.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212363.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212362.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212361.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212360.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011212359.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212358.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011210014.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212356.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212355.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212354.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212353.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212352.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212351.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212350.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212349.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212348.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212347.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212346.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011212345.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212343.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011212342.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212341.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212175.1
COORDINATES: similar to AA sequence:RefSeq:WP_020663618.1
Scr1 family TA system antitoxin-like transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011212335.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212334.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212333.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212332.1
COORDINATES: protein motif:HMM:NF025429.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0046872 - metal ion binding [Evidence IEA]
Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog.; Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006438145.1
COORDINATES: similar to AA sequence:RefSeq:WP_010950421.1
COORDINATES: similar to AA sequence:RefSeq:WP_003994301.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007030379.1
COORDINATES: similar to AA sequence:RefSeq:WP_009475847.1
COORDINATES: similar to AA sequence:RefSeq:WP_019930519.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005086319.1
COORDINATES: similar to AA sequence:RefSeq:WP_011133493.1
COORDINATES: similar to AA sequence:RefSeq:WP_006545830.1
reverse transcriptase/maturase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012359879.1
COORDINATES: similar to AA sequence:RefSeq:WP_004952184.1
COORDINATES: protein motif:HMM:NF015799.2
COORDINATES: similar to AA sequence:RefSeq:WP_020730850.1
COORDINATES: similar to AA sequence:RefSeq:WP_005456785.1
COORDINATES: protein motif:HMM:NF012581.2
proton-conducting transporter membrane subunit
COORDINATES: protein motif:HMM:NF013231.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017840390.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007633972.1
winged helix-turn-helix domain-containing protein