Streptomyces niveus NCIMB 11891 plasmid pSniv1 scaffold00002, whole genome shotgun sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Draft Genome Sequence of Streptomyces niveus NCIMB 11891, Producer of the Aminocoumarin Antibiotic Novobiocin
Draft genome sequence of Streptomyces niveus NCIMB 11891
Submitted (05-SEP-2013) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCM002281.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nAssembly Name :: S.niveus_v1\nGenome Coverage :: 23.0x\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 03:39:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,929\nCDSs (total) :: 7,855\nGenes (coding) :: 7,535\nCDSs (with protein) :: 7,535\nGenes (RNA) :: 74\nrRNAs :: 2 (5S)\ncomplete rRNAs :: 2 (5S)\ntRNAs :: 69\nncRNAs :: 3\nPseudo Genes (total) :: 320\nCDSs (without protein) :: 320\nPseudo Genes (ambiguous residues) :: 0 of 320\nPseudo Genes (frameshifted) :: 88 of 320\nPseudo Genes (incomplete) :: 272 of 320\nPseudo Genes (internal stop) :: 11 of 320\nPseudo Genes (multiple problems) :: 46 of 320\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011109749.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010355822.1
COORDINATES: similar to AA sequence:RefSeq:WP_020139688.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074702.1
COORDINATES: similar to AA sequence:RefSeq:WP_011029966.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006375377.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007383608.1
COORDINATES: similar to AA sequence:RefSeq:WP_006375391.1
COORDINATES: similar to AA sequence:RefSeq:WP_009719417.1
GO:0006260 - DNA replication [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
replication-associated recombination protein A
COORDINATES: similar to AA sequence:RefSeq:WP_005473805.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_008745670.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020207246.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015793311.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106293.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636357.1
GO:0003896 - DNA primase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007268491.1
COORDINATES: similar to AA sequence:RefSeq:WP_007821000.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004936820.1
COORDINATES: similar to AA sequence:RefSeq:WP_010069853.1
COORDINATES: similar to AA sequence:RefSeq:WP_018090607.1
COORDINATES: similar to AA sequence:RefSeq:WP_014173629.1
COORDINATES: similar to AA sequence:RefSeq:WP_009712425.1
beta-ketoacyl synthase N-terminal-like domain-containing protein
COORDINATES: protein motif:HMM:NF039952.1
COORDINATES: protein motif:HMM:NF013955.2
COORDINATES: protein motif:HMM:NF024970.2
COORDINATES: similar to AA sequence:RefSeq:WP_010064686.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158409.1
COORDINATES: similar to AA sequence:RefSeq:WP_003963345.1
COORDINATES: similar to AA sequence:RefSeq:WP_006607016.1
COORDINATES: similar to AA sequence:RefSeq:WP_014670158.1
COORDINATES: similar to AA sequence:RefSeq:WP_010986809.1
COORDINATES: similar to AA sequence:RefSeq:WP_019763425.1
COORDINATES: similar to AA sequence:RefSeq:WP_018840136.1
GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]
PP2C family protein-serine/threonine phosphatase
COORDINATES: protein motif:HMM:NF027952.2
COORDINATES: similar to AA sequence:RefSeq:WP_018092524.1
COORDINATES: protein motif:HMM:NF020904.2
GO:0042546 - cell wall biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF040274.1
COORDINATES: similar to AA sequence:RefSeq:WP_020674016.1
COORDINATES: similar to AA sequence:RefSeq:WP_020303203.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020129095.1
COORDINATES: similar to AA sequence:RefSeq:WP_005482412.1
COORDINATES: similar to AA sequence:RefSeq:WP_020129094.1
COORDINATES: similar to AA sequence:RefSeq:WP_005482399.1
COORDINATES: similar to AA sequence:RefSeq:WP_020665611.1
COORDINATES: similar to AA sequence:RefSeq:WP_020115022.1
COORDINATES: similar to AA sequence:RefSeq:WP_020134791.1
COORDINATES: similar to AA sequence:RefSeq:WP_020500876.1
COORDINATES: similar to AA sequence:RefSeq:WP_020550975.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612292.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020636674.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014179859.1
COORDINATES: similar to AA sequence:RefSeq:WP_014673285.1
COORDINATES: similar to AA sequence:RefSeq:WP_016468165.1
COORDINATES: similar to AA sequence:RefSeq:WP_018511332.1
COORDINATES: similar to AA sequence:RefSeq:WP_017578584.1
COORDINATES: protein motif:HMM:NF018154.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011109678.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039366.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020132047.1
COORDINATES: protein motif:HMM:NF013676.2
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019982431.1
COORDINATES: similar to AA sequence:RefSeq:WP_010265561.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009716733.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018524519.1
tetratricopeptide repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006382828.1
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: protein motif:HMM:NF033532.2
type VII secretion system-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_018523459.1
COORDINATES: protein motif:HMM:NF012915.2
COORDINATES: protein motif:HMM:NF014787.2
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014152331.1
GO:0008664 - 2'-5'-RNA ligase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014158422.1
COORDINATES: protein motif:HMM:NF024248.2
COORDINATES: similar to AA sequence:RefSeq:WP_015580432.1
COORDINATES: similar to AA sequence:RefSeq:WP_018844905.1
COORDINATES: protein motif:HMM:NF039687.1
COORDINATES: similar to AA sequence:RefSeq:WP_012382128.1
COORDINATES: similar to AA sequence:RefSeq:WP_004940863.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017545052.1
daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012184546.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014172676.1
COORDINATES: similar to AA sequence:RefSeq:WP_017627367.1
COORDINATES: similar to AA sequence:RefSeq:WP_020543461.1
COORDINATES: similar to AA sequence:RefSeq:WP_014182363.1
GO:0016310 - phosphorylation [Evidence IEA]
aminoglycoside phosphotransferase family protein