Streptomyces roseochromogenus subsp. oscitans DS 12.976 plasmid pSros1 scaffold00002, whole genome shotgun sequence.
Streptomyces roseochromogenus subsp. oscitans DS 12.976
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Draft Genome Sequence of Streptomyces roseochromogenes subsp. oscitans DS 12.976, Producer of the Aminocoumarin Antibiotic Clorobiocin
Draft genome sequence of Streptomyces roseochromogenes subsp. oscitans DS 12.976
Submitted (05-SEP-2013) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCM002286.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nAssembly Name :: S.roseochromogenes_v1\nGenome Coverage :: 20.4x\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/30/2023 04:00:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 9,102\nCDSs (total) :: 9,017\nGenes (coding) :: 8,354\nCDSs (with protein) :: 8,354\nGenes (RNA) :: 85\nrRNAs :: 6, 6 (16S, 23S)\ncomplete rRNAs :: 6, 6 (16S, 23S)\ntRNAs :: 70\nncRNAs :: 3\nPseudo Genes (total) :: 663\nCDSs (without protein) :: 663\nPseudo Genes (ambiguous residues) :: 0 of 663\nPseudo Genes (frameshifted) :: 246 of 663\nPseudo Genes (incomplete) :: 564 of 663\nPseudo Genes (internal stop) :: 58 of 663\nPseudo Genes (multiple problems) :: 185 of 663\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_014152171.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_020140937.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043667.1
COORDINATES: similar to AA sequence:RefSeq:WP_016644109.1
COORDINATES: protein motif:HMM:NF013073.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
bifunctional lytic transglycosylase/C40 family peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_006130478.1
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0047952 - glycerol-3-phosphate dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0046167 - glycerol-3-phosphate biosynthetic process [Evidence IEA]
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_018568345.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018568344.1
COORDINATES: similar to AA sequence:RefSeq:WP_018568343.1
COORDINATES: protein motif:HMM:NF024970.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF040183.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018470038.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039453.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522953.1
COORDINATES: similar to AA sequence:RefSeq:WP_016639723.1
COORDINATES: protein motif:HMM:NF020250.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF019428.2
TadE/TadG family type IV pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_016639715.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268898.1
pilus assembly protein TadG-related protein
COORDINATES: protein motif:HMM:NF013630.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016644114.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_020124399.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554988.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569236.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569237.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677503.1
COORDINATES: similar to AA sequence:RefSeq:WP_018554999.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074394.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677500.1
COORDINATES: similar to AA sequence:RefSeq:WP_007505684.1
COORDINATES: similar to AA sequence:RefSeq:WP_018555002.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998292.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522962.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645455.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645457.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645459.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449479.1
COORDINATES: similar to AA sequence:RefSeq:WP_017236920.1
COORDINATES: similar to AA sequence:RefSeq:WP_018835069.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011109694.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979062.1
COORDINATES: similar to AA sequence:RefSeq:WP_010988925.1
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010988926.1
COORDINATES: similar to AA sequence:RefSeq:WP_005477086.1
COORDINATES: similar to AA sequence:RefSeq:WP_019883815.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022019.2
COORDINATES: similar to AA sequence:RefSeq:WP_018522327.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569657.1
COORDINATES: protein motif:HMM:TIGR02772.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004921040.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677141.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677551.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074346.1
COORDINATES: similar to AA sequence:RefSeq:WP_015623290.1
COORDINATES: similar to AA sequence:RefSeq:WP_014136380.1
COORDINATES: protein motif:HMM:TIGR00652.1
GO:0008837 - diaminopimelate epimerase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009998360.1
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019354735.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009998361.1
COORDINATES: similar to AA sequence:RefSeq:WP_014142973.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998362.1
COORDINATES: similar to AA sequence:RefSeq:WP_018850364.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_008745301.1
COORDINATES: similar to AA sequence:RefSeq:WP_014044707.1
Mu transposase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF033179.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
TnsA-like heteromeric transposase endonuclease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009338618.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019524936.1
COORDINATES: similar to AA sequence:RefSeq:WP_015794083.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043463.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569528.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018569529.1