Corvus hawaiiensis isolate bCorHaw1 chromosome 41, bCorHaw1.pri.cur, whole genome shotgun sequence.
type: Entry
definition: Corvus hawaiiensis isolate bCorHaw1 chromosome 41, bCorHaw1.pri.cur, whole genome shotgun sequence.
sequence version: NC_063253.1
sequence date: 2022-05-19
sequence: sequence
division: CON
label: NC_063253.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA838000
dblink: SAMN22550278
keyword: WGS
keyword: RefSeq
source: Corvus hawaiiensis (hawaiian crow)
organism: Corvus hawaiiensis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM036386.1.\nAssembly name: bCorHaw1.pri.cur\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/11/04. The original whole-genome shotgun project has the\naccession JAJGSY000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 20-SEP-2021\nAssembly Method :: HiFiasm v. 0.15.4+galaxy; purge_dups v.\n 1.2.5+galaxy3; Bionano Solve v.\n 3.6.1+galaxy2; Salsa v. 2.3+galaxy0;\n gEVAL manual curation v. 2021-09-20; VGP\n pipeline v. 2.0\nAssembly Name :: bCorHaw1.pri.cur\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 29.61x\nSequencing Technology :: PacBio Sequel II HiFi; Illumina NovaSeq;\n Bionano Genomics Saphyr DLS; Arima\n Genomics Hi-C v2\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Corvus hawaiiensis Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 123330
topology: linear
so has quality: SO_0000987
location: 1..123330
location: region:1-123330:1
RO_0002162: 134902

NC_063253
type: RefSeq
SIO_000068: refseq

PRJNA838000
type: BioProject
SIO_000068: bioproject

SAMN22550278
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123330:1
position: 123330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-123330:1:source
so part of: sequence
organism: Corvus hawaiiensis
mol type: genomic DNA
isolate: bCorHaw1
chromosome: 41
sex: female
tissue type: blood
dev stage: adult
country: USA: University of Hawaii at Manoa
lat lon: 21.297467 N 157.818261 W
collection date: 2020-08-08
collected by: Bryce Masuda

134902
type: Taxonomy
SIO_000068: taxonomy

LOC125319307
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319307
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3895..7262)
location: region:3895-7262:-1
so has part: feature:3895-7262:-1:exon
subclass of: SO_0000010

125319307
type: Gene
SIO_000068: ncbigene

position:3895:-1
position: 3895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7262:-1
position: 7262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3895-7262:-1:exon

LOC125319307
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125319307
product: uncharacterized LOC125319307
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 69% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048290418.1
SIO_010081: LOC125319307
subclass of: SO_0000673
so part of: LOC125319307
location: complement(join(3895..3959,4355..5122,5401..5478,6026..6242,7131..7262))
location: region:3895-7262:-1
so has part: feature:7131-7262:-1:exon
so has part: feature:6026-6242:-1:exon
so has part: feature:5401-5478:-1:exon
so has part: feature:4355-5122:-1:exon
so has part: feature:3895-3959:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7131-7262:-1:exon

position:7131:-1
position: 7131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6026-6242:-1:exon

position:6026:-1
position: 6026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6242:-1
position: 6242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5401-5478:-1:exon

position:5401:-1
position: 5401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5478:-1
position: 5478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4355-5122:-1:exon

position:4355:-1
position: 4355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5122:-1
position: 5122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3895-3959:-1:exon

position:3959:-1
position: 3959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125319307
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319307
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125319307
translation: MRFPPSSLGREKRPERPRAAGKKPGTNRSGWNSSRQGRGGKSGAVSLGRFGPIWVNLGQFGSIWADLGQFGPIWVNLGQFRSIQARFGSIWADFGQFGLNLGQFRSIWAQFGSIWANFAHSRLILGQSKADLGQFEPISLTPGSIWADSPPISVQPPQPRITTPSPSPCPSSGRCRGRRGRVRPSGYRLRFRRLRRAARALVLENGALCDEVARLEAKWLRAREERRFLLARLLRLRASDANDANNANNNANAEAPRRPRRARDGARTAAGRARPGRDGQREAAAKDGPRAAAAREEAWASGQRPADATWASGQRSADAPWASGQRSADAPWASGPQAGRTAARRTAPRRGPTGSERPKRRGRRGRSSGPTGPAREPPRRPRGQRAAGSGRPSGAGPRVTLGPSLTIPSDPRTILDHSQ
SIO_010081: LOC125319307
subclass of: SO_0000673
so part of: LOC125319307
location: complement(join(3895..3959,4355..5122,5401..5478,6026..6242,7131..7262))
location: region:3895-7262:-1
so has part: feature:7131-7262:-1:exon
so has part: feature:6026-6242:-1:exon
so has part: feature:5401-5478:-1:exon
so has part: feature:4355-5122:-1:exon
so has part: feature:3895-3959:-1:exon

XP_048146375.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7131-7262:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6026-6242:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5401-5478:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4355-5122:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3895-3959:-1:exon

LOC125319308
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319308
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 7261..67286
location: region:7261-67286:1
so has part: feature:7261-67286:1:exon
subclass of: SO_0000010

125319308
type: Gene
SIO_000068: ncbigene

position:7261:1
position: 7261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67286:1
position: 67286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7261-67286:1:exon

LOC125319308
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125319308
product: 3 beta-hydroxysteroid dehydrogenase type 7-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
transcript id: XM_048290419.1
SIO_010081: LOC125319308
subclass of: SO_0000673
so part of: LOC125319308
location: join(7261..7397,10042..10100,55194..55337,57977..58129,60743..60851,62494..62593,63665..63827,65826..66459,67083..67286)
location: region:7261-67286:1
so has part: feature:7261-7397:1:exon
so has part: feature:10042-10100:1:exon
so has part: feature:55194-55337:1:exon
so has part: feature:57977-58129:1:exon
so has part: feature:60743-60851:1:exon
so has part: feature:62494-62593:1:exon
so has part: feature:63665-63827:1:exon
so has part: feature:65826-66459:1:exon
so has part: feature:67083-67286:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7261-7397:1:exon

position:7397:1
position: 7397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10042-10100:1:exon

position:10042:1
position: 10042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10100:1
position: 10100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:55194-55337:1:exon

position:55194:1
position: 55194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55337:1
position: 55337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:57977-58129:1:exon

position:57977:1
position: 57977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58129:1
position: 58129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:60743-60851:1:exon

position:60743:1
position: 60743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60851:1
position: 60851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:62494-62593:1:exon

position:62494:1
position: 62494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:62593:1
position: 62593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:63665-63827:1:exon

position:63665:1
position: 63665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63827:1
position: 63827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:65826-66459:1:exon

position:65826:1
position: 65826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66459:1
position: 66459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:67083-67286:1:exon

position:67083:1
position: 67083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319308
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319308
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: 3 beta-hydroxysteroid dehydrogenase type 7-like
translation: MWKGRRSEAIRLSSAVASGFEPLWPARRTASSVILKEPSRLYGHFREGEGRERGHGGTPRGRRPPGPGCRGLPAGSGFLGSHLARLLLDREPELRELRVLDVRPDPAAIPERHRSRVRLLRGDVGDLGALRAALAGAAVVFHAASLVDVWGRSSPEAIARVNVLGTKNVIRGCQAWGVPILIYTSSMEVVGPNTRGDPFVRGDEDSPYPTRHSEPYPLSKAQAERLVLEANGTPVAGGGRLVTLSLRPTGIFGERHPLLELFYRRGKGLGGWVPRTLPPHAEHGRVYAGNVAWMHVLAARAARRSPASVAGEVFFCYDASPCVPYEDFNLLLLGPAGIRSGGPRIPPALLGMLARLNGALRWLLGALGAGFAPLLNPYTWAVACTAFTVRTDKAERCFGYRPLFSWEEARERTLAWVRQLDGA
SIO_010081: LOC125319308
subclass of: SO_0000673
so part of: LOC125319308
location: join(7261..7397,10042..10100,55194..55337,57977..58129,60743..60851,62494..62593,63665..63827,65826..66234)
location: region:7261-66234:1
so has part: feature:7261-7397:1:exon
so has part: feature:10042-10100:1:exon
so has part: feature:55194-55337:1:exon
so has part: feature:57977-58129:1:exon
so has part: feature:60743-60851:1:exon
so has part: feature:62494-62593:1:exon
so has part: feature:63665-63827:1:exon
so has part: feature:65826-66234:1:exon

XP_048146376.1
type: Protein
SIO_000068: ncbiprotein

position:66234:1
position: 66234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7261-7397:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10042-10100:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:55194-55337:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:57977-58129:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:60743-60851:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:62494-62593:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:63665-63827:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:65826-66234:1:exon

LOC125319309
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319309
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <71420..101197
location: region:71420-101197:1
so has part: feature:71420-101197:1:exon
subclass of: SO_0000010

125319309
type: Gene
SIO_000068: ncbigene

position:71420:1
position: 71420
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:101197:1
position: 101197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71420-101197:1:exon

LOC125319309
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125319309
product: sarcoplasmic/endoplasmic reticulum calcium ATPase 1-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_048290420.1
SIO_010081: LOC125319309
subclass of: SO_0000673
so part of: LOC125319309
location: join(<71420..71615,72878..73044,75337..75425,77664..77766,77856..77987,79910..80035,82629..82846,84449..84784,86966..87186,89624..89826,91295..91380,91653..91786,93333..93450,94882..94999,101084..101197)
location: region:71420-101197:1
so has part: feature:71420-71615:1:exon
so has part: feature:72878-73044:1:exon
so has part: feature:75337-75425:1:exon
so has part: feature:77664-77766:1:exon
so has part: feature:77856-77987:1:exon
so has part: feature:79910-80035:1:exon
so has part: feature:82629-82846:1:exon
so has part: feature:84449-84784:1:exon
so has part: feature:86966-87186:1:exon
so has part: feature:89624-89826:1:exon
so has part: feature:91295-91380:1:exon
so has part: feature:91653-91786:1:exon
so has part: feature:93333-93450:1:exon
so has part: feature:94882-94999:1:exon
so has part: feature:101084-101197:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:71420-71615:1:exon

position:71615:1
position: 71615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:72878-73044:1:exon

position:72878:1
position: 72878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73044:1
position: 73044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:75337-75425:1:exon

position:75337:1
position: 75337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75425:1
position: 75425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:77664-77766:1:exon

position:77664:1
position: 77664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77766:1
position: 77766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:77856-77987:1:exon

position:77856:1
position: 77856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77987:1
position: 77987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:79910-80035:1:exon

position:79910:1
position: 79910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80035:1
position: 80035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:82629-82846:1:exon

position:82629:1
position: 82629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82846:1
position: 82846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:84449-84784:1:exon

position:84449:1
position: 84449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84784:1
position: 84784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:86966-87186:1:exon

position:86966:1
position: 86966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87186:1
position: 87186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:89624-89826:1:exon

position:89624:1
position: 89624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89826:1
position: 89826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:91295-91380:1:exon

position:91295:1
position: 91295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:91380:1
position: 91380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:91653-91786:1:exon

position:91653:1
position: 91653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:91786:1
position: 91786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:93333-93450:1:exon

position:93333:1
position: 93333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:93450:1
position: 93450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:94882-94999:1:exon

position:94882:1
position: 94882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94999:1
position: 94999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:101084-101197:1:exon

position:101084:1
position: 101084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319309
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319309
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: sarcoplasmic/endoplasmic reticulum calcium ATPase 1-like
translation: DKTPLQQKLDEFGEQLSKVISLICVAVWAINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIVDKVEGDLCSFNEFSITGSTYAPEGEVLKQDRPVKAGQYDGLVELATICALCNDSSLDYNESKGVYEKVGEATETALTCLVEKMNVFNTDVRNLSKVERANACNSVIKQLMKKEFTLEFSRDRKSMSVFCSPAKASRAAVGNKMFVKGAPEGVIDRCSYVRVGTARVPLTPAAXEKIQSVIKEWGTGRDTLRCLALATRDTPPKKEDMLLEDSTKFAEYETDLTFVGCVGMLDPPRKEVMGSIRLCRDAGIRVIMITGDNKGTAIAICRRIGIFGEDEEVSGRAYTGREFDDLPLSEQREACRRACCFARVEPTHKSKIVEFLQSFDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDKPPRSPKEPLISGWLFFRYLAIGGYVGAATVGAAAWWFLFAEDGPSISYYQLTHFMQCSEHNAEFEGLDCDVFESPVPMTMALSVLVTIEMCNALNSLSENQSLARMPPWVNIWLVGSICLSMSLHFVILYIDPLPMIFKLTPLSVTHWLMVLKISFPVILLDEALKFIARNYLEADEGPRKTRK
SIO_010081: LOC125319309
subclass of: SO_0000673
so part of: LOC125319309
location: join(<71420..71615,72878..73044,75337..75425,77664..77766,77856..77987,79910..80035,82629..82846,84449..84784,86966..87186,89624..89826,91295..91380,91653..91786,93333..93450,94882..94999,101084..101115)
location: region:71420-101115:1
so has part: feature:71420-71615:1:exon
so has part: feature:72878-73044:1:exon
so has part: feature:75337-75425:1:exon
so has part: feature:77664-77766:1:exon
so has part: feature:77856-77987:1:exon
so has part: feature:79910-80035:1:exon
so has part: feature:82629-82846:1:exon
so has part: feature:84449-84784:1:exon
so has part: feature:86966-87186:1:exon
so has part: feature:89624-89826:1:exon
so has part: feature:91295-91380:1:exon
so has part: feature:91653-91786:1:exon
so has part: feature:93333-93450:1:exon
so has part: feature:94882-94999:1:exon
so has part: feature:101084-101115:1:exon

XP_048146377.1
type: Protein
SIO_000068: ncbiprotein

position:101115:1
position: 101115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71420-71615:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:72878-73044:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:75337-75425:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:77664-77766:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:77856-77987:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:79910-80035:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:82629-82846:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:84449-84784:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:86966-87186:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:89624-89826:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:91295-91380:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:91653-91786:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:93333-93450:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:94882-94999:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:101084-101115:1:exon

LOC125319310
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319310
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(106074..>115145)
location: region:106074-115145:-1
so has part: feature:106074-115145:-1:exon
subclass of: SO_0000010

125319310
type: Gene
SIO_000068: ncbigene

position:106074:-1
position: 106074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:115145:-1
position: 115145
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106074-115145:-1:exon

LOC125319310
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125319310
product: myosin regulatory light chain 2, skeletal muscle isoform
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048290421.1
SIO_010081: LOC125319310
subclass of: SO_0000673
so part of: LOC125319310
location: complement(join(106074..106323,107440..107488,108218..108296,109568..109672,111435..111510,112467..112554,115078..>115145))
location: region:106074-115145:-1
so has part: feature:115078-115145:-1:exon
so has part: feature:112467-112554:-1:exon
so has part: feature:111435-111510:-1:exon
so has part: feature:109568-109672:-1:exon
so has part: feature:108218-108296:-1:exon
so has part: feature:107440-107488:-1:exon
so has part: feature:106074-106323:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:115078-115145:-1:exon

position:115078:-1
position: 115078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:112467-112554:-1:exon

position:112467:-1
position: 112467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112554:-1
position: 112554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:111435-111510:-1:exon

position:111435:-1
position: 111435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111510:-1
position: 111510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:109568-109672:-1:exon

position:109568:-1
position: 109568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109672:-1
position: 109672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:108218-108296:-1:exon

position:108218:-1
position: 108218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:108296:-1
position: 108296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:107440-107488:-1:exon

position:107440:-1
position: 107440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:107488:-1
position: 107488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:106074-106323:-1:exon

position:106323:-1
position: 106323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125319310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319310
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myosin regulatory light chain 2, skeletal muscle isoform
translation: PEALKSRGGSEGPERAEGEPEPWPRSGEAPRGRGQLQRVLHVDQTQIQEFKEAFTVIDQNRDGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTQCDRFTPEEIRNMWAAFPPDVAGNVDYKNICYVITHGEDKEGE
SIO_010081: LOC125319310
subclass of: SO_0000673
so part of: LOC125319310
location: complement(join(106219..106323,107440..107488,108218..108296,109568..109672,111435..111510,112467..112554,115078..>115145))
location: region:106219-115145:-1
so has part: feature:115078-115145:-1:exon
so has part: feature:112467-112554:-1:exon
so has part: feature:111435-111510:-1:exon
so has part: feature:109568-109672:-1:exon
so has part: feature:108218-108296:-1:exon
so has part: feature:107440-107488:-1:exon
so has part: feature:106219-106323:-1:exon

XP_048146378.1
type: Protein
SIO_000068: ncbiprotein

position:106219:-1
position: 106219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:115078-115145:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:112467-112554:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:111435-111510:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:109568-109672:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:108218-108296:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:107440-107488:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:106219-106323:-1:exon