Corvus hawaiiensis isolate bCorHaw1 chromosome 40, bCorHaw1.pri.cur, whole genome shotgun sequence.
type: Entry
definition: Corvus hawaiiensis isolate bCorHaw1 chromosome 40, bCorHaw1.pri.cur, whole genome shotgun sequence.
sequence version: NC_063252.1
sequence date: 2022-05-19
sequence: sequence
division: CON
label: NC_063252.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA838000
dblink: SAMN22550278
keyword: WGS
keyword: RefSeq
source: Corvus hawaiiensis (hawaiian crow)
organism: Corvus hawaiiensis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM036385.1.\nAssembly name: bCorHaw1.pri.cur\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/11/04. The original whole-genome shotgun project has the\naccession JAJGSY000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 20-SEP-2021\nAssembly Method :: HiFiasm v. 0.15.4+galaxy; purge_dups v.\n 1.2.5+galaxy3; Bionano Solve v.\n 3.6.1+galaxy2; Salsa v. 2.3+galaxy0;\n gEVAL manual curation v. 2021-09-20; VGP\n pipeline v. 2.0\nAssembly Name :: bCorHaw1.pri.cur\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 29.61x\nSequencing Technology :: PacBio Sequel II HiFi; Illumina NovaSeq;\n Bionano Genomics Saphyr DLS; Arima\n Genomics Hi-C v2\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Corvus hawaiiensis Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 337809
topology: linear
so has quality: SO_0000987
location: 1..337809
location: region:1-337809:1
RO_0002162: 134902

NC_063252
type: RefSeq
SIO_000068: refseq

PRJNA838000
type: BioProject
SIO_000068: bioproject

SAMN22550278
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:337809:1
position: 337809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-337809:1:source
so part of: sequence
organism: Corvus hawaiiensis
mol type: genomic DNA
isolate: bCorHaw1
chromosome: 40
sex: female
tissue type: blood
dev stage: adult
country: USA: University of Hawaii at Manoa
lat lon: 21.297467 N 157.818261 W
collection date: 2020-08-08
collected by: Bryce Masuda

134902
type: Taxonomy
SIO_000068: taxonomy

LOC125319304
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319304
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 12313..31458
location: region:12313-31458:1
so has part: feature:12313-31458:1:exon
subclass of: SO_0000010

125319304
type: Gene
SIO_000068: ncbigene

position:12313:1
position: 12313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31458:1
position: 31458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12313-31458:1:exon

LOC125319304
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125319304
product: large neutral amino acids transporter small subunit 2-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048290410.1
SIO_010081: LOC125319304
subclass of: SO_0000673
so part of: LOC125319304
location: join(12313..12523,13454..13557,15422..15519,18350..18499,21028..21205,22508..22630,23108..23433,26695..26760,28739..28835,28947..29090,31451..31458)
location: region:12313-31458:1
so has part: feature:12313-12523:1:exon
so has part: feature:13454-13557:1:exon
so has part: feature:15422-15519:1:exon
so has part: feature:18350-18499:1:exon
so has part: feature:21028-21205:1:exon
so has part: feature:22508-22630:1:exon
so has part: feature:23108-23433:1:exon
so has part: feature:26695-26760:1:exon
so has part: feature:28739-28835:1:exon
so has part: feature:28947-29090:1:exon
so has part: feature:31451-31458:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12313-12523:1:exon

position:12523:1
position: 12523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13454-13557:1:exon

position:13454:1
position: 13454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13557:1
position: 13557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:15422-15519:1:exon

position:15422:1
position: 15422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15519:1
position: 15519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:18350-18499:1:exon

position:18350:1
position: 18350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18499:1
position: 18499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:21028-21205:1:exon

position:21028:1
position: 21028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21205:1
position: 21205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:22508-22630:1:exon

position:22508:1
position: 22508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22630:1
position: 22630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:23108-23433:1:exon

position:23108:1
position: 23108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23433:1
position: 23433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:26695-26760:1:exon

position:26695:1
position: 26695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26760:1
position: 26760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:28739-28835:1:exon

position:28739:1
position: 28739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28835:1
position: 28835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:28947-29090:1:exon

position:28947:1
position: 28947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29090:1
position: 29090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:31451-31458:1:exon

position:31451:1
position: 31451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319304
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319304
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: large neutral amino acids transporter small subunit 2-like
translation: MLIGGRNLPLAISISLPLVTFLYVAANVAYLAAMSPQEILDSDAVAVSFGERVLGPLAWVMPVAVALSTFGGVNGSLFTCSRLFYAGAREGHLPALLAMIHLRRRTPVPALLVTCVSTLLMLVTGDIYTLINYVGFVNYLWYGVTVAGLVLLRWREPHLPRPIKVNLLLPALYLLFWGALLLFSVWSEPLVCGIGLAIMATGAPVYLLCVRGGPRPPALRRAMASLTRFGQRLLLVVYPGGGGGAEDDPSPFQDPPKAPSPPSDLPPPPPPNPNKNSENNRKHPKEPNGKNRKPPSEHRKHPKEARGSCRSHVRKRPKAQRKRRHTKMADGEEVTLDGRPLHLLRVADLKAALEQRGLAKSGQKSALIKRLRGALMLENLQKHSSPHPTFQPNSQMGEAMGQNSFIKQYLEKQQELLQQRRDPPEAHAAPEEPGEEEEEEEEEEGAARRERRRAVRRGPSAEVWGKFGRFWAISGTA
SIO_010081: LOC125319304
subclass of: SO_0000673
so part of: LOC125319304
location: join(12383..12523,13454..13557,15422..15519,18350..18499,21028..21205,22508..22630,23108..23433,26695..26760,28739..28835,28947..29090,31451..31458)
location: region:12383-31458:1
so has part: feature:12383-12523:1:exon
so has part: feature:13454-13557:1:exon
so has part: feature:15422-15519:1:exon
so has part: feature:18350-18499:1:exon
so has part: feature:21028-21205:1:exon
so has part: feature:22508-22630:1:exon
so has part: feature:23108-23433:1:exon
so has part: feature:26695-26760:1:exon
so has part: feature:28739-28835:1:exon
so has part: feature:28947-29090:1:exon
so has part: feature:31451-31458:1:exon

XP_048146367.1
type: Protein
SIO_000068: ncbiprotein

position:12383:1
position: 12383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12383-12523:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13454-13557:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15422-15519:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:18350-18499:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:21028-21205:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:22508-22630:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:23108-23433:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:26695-26760:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:28739-28835:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:28947-29090:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:31451-31458:1:exon

LOC125319306
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319306
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 31072..32905
location: region:31072-32905:1
so has part: feature:31072-32905:1:exon
subclass of: SO_0000010

125319306
type: Gene
SIO_000068: ncbigene

position:31072:1
position: 31072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32905:1
position: 32905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31072-32905:1:exon

LOC125319306
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125319306
product: uncharacterized LOC125319306, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XM_048290414.1
SIO_010081: LOC125319306
subclass of: SO_0000673
so part of: LOC125319306
location: join(31072..32448,32500..32905)
location: region:31072-32905:1
so has part: feature:31072-32448:1:exon
so has part: feature:32500-32905:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31072-32448:1:exon

position:32448:1
position: 32448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:32500-32905:1:exon

position:32500:1
position: 32500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319306
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125319306
product: uncharacterized LOC125319306, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
transcript id: XM_048290413.1
SIO_010081: LOC125319306
subclass of: SO_0000673
so part of: LOC125319306
location: join(31072..32433,32464..32905)
location: region:31072-32905:1
so has part: feature:31072-32433:1:exon
so has part: feature:32464-32905:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31072-32433:1:exon

position:32433:1
position: 32433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:32464-32905:1:exon

position:32464:1
position: 32464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319306
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125319306
product: uncharacterized LOC125319306, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_048290416.1
SIO_010081: LOC125319306
subclass of: SO_0000673
so part of: LOC125319306
location: join(31072..32433,32515..32905)
location: region:31072-32905:1
so has part: feature:31072-32433:1:exon
so has part: feature:32515-32905:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31072-32433:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:32515-32905:1:exon

position:32515:1
position: 32515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319306
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125319306
product: uncharacterized LOC125319306, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
transcript id: XM_048290415.1
SIO_010081: LOC125319306
subclass of: SO_0000673
so part of: LOC125319306
location: join(31072..31921,31994..32905)
location: region:31072-32905:1
so has part: feature:31072-31921:1:exon
so has part: feature:31994-32905:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31072-31921:1:exon

position:31921:1
position: 31921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:31994-32905:1:exon

position:31994:1
position: 31994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319306
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319306
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125319306 isoform X2
translation: MAVALALSRAGHALGHALEVATGSCRQATALGTLLLPLDEPAACRGAGHSWEGFGPAPQAFALVHCGLGLAEEAAALGRRLYGGKMAAAGKMAAGGKMAAGEKMVSWYEMADESKMAPWYKMAPWQKTADEPKMAAGSKMAPWYKMASGSKMAAGYTMGDEPKMAAGSKMAGGYTMGDEPKMAAGSGWAWPRPTWRPGAGFEPRRPRPSSLEWAEPPHANYGWDRPVTSEWAGPTGWSWGGAGRHLGRGGHAPLGGRGGHFEGGHFDGGHFEGRHFEHPGGHFEGGHVEGGHFEGGHFEGRHVEPLHFGRPGRHFGGGHFDGGHLASPRAFPEADPALRSPERAPPVALSILYLLAVALLLTWHLLLVVTLTYRNTWARNAAGAALGWAAWAVTYRGWYRWPWSPGPPGWG
SIO_010081: LOC125319306
subclass of: SO_0000673
so part of: LOC125319306
location: join(31566..32448,32500..32852)
location: region:31566-32852:1
so has part: feature:31566-32448:1:exon
so has part: feature:32500-32852:1:exon

XP_048146371.1
type: Protein
SIO_000068: ncbiprotein

position:31566:1
position: 31566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32852:1
position: 32852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31566-32448:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:32500-32852:1:exon

LOC125319306
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319306
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125319306 isoform X1
translation: MAVALALSRAGHALGHALEVATGSCRQATALGTLLLPLDEPAACRGAGHSWEGFGPAPQAFALVHCGLGLAEEAAALGRRLYGGKMAAAGKMAAGGKMAAGEKMVSWYEMADESKMAPWYKMAPWQKTADEPKMAAGSKMAPWYKMASGSKMAAGYTMGDEPKMAAGSKMAGGYTMGDEPKMAAGSGWAWPRPTWRPGAGFEPRRPRPSSLEWAEPPHANYGWDRPVTSEWAGPTGWSWGGAGRHLGRGGHAPLGGRGGHFEGGHFDGGHFEGRHFEHPGGHFEGGHVEGRHFEHPGGHFEGGHFEGRHVEPLHFGRPGRHFGGGHFDGGHLASPRAFPEADPALRSPERAPPVALSILYLLAVALLLTWHLLLVVTLTYRNTWARNAAGAALGWAAWAVTYRGWYRWPWSPGPPGWG
SIO_010081: LOC125319306
subclass of: SO_0000673
so part of: LOC125319306
location: join(31566..32433,32464..32852)
location: region:31566-32852:1
so has part: feature:31566-32433:1:exon
so has part: feature:32464-32852:1:exon

XP_048146370.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31566-32433:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:32464-32852:1:exon

LOC125319306
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319306
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125319306 isoform X4
translation: MAVALALSRAGHALGHALEVATGSCRQATALGTLLLPLDEPAACRGAGHSWEGFGPAPQAFALVHCGLGLAEEAAALGRRLYGGKMAAAGKMAAGGKMAAGEKMVSWYEMADESKMAPWYKMAPWQKTADEPKMAAGSKMAPWYKMASGSKMAAGYTMGDEPKMAAGSKMAGGYTMGDEPKMAAGSGWAWPRPTWRPGAGFEPRRPRPSSLEWAEPPHANYGWDRPVTSEWAGPTGWSWGGAGRHLGRGGHAPLGGRGGHFEGGHFDGGHFEGRHFEHPGGHFEGGHVEGRHVEPLHFGRPGRHFGGGHFDGGHLASPRAFPEADPALRSPERAPPVALSILYLLAVALLLTWHLLLVVTLTYRNTWARNAAGAALGWAAWAVTYRGWYRWPWSPGPPGWG
SIO_010081: LOC125319306
subclass of: SO_0000673
so part of: LOC125319306
location: join(31566..32433,32515..32852)
location: region:31566-32852:1
so has part: feature:31566-32433:1:exon
so has part: feature:32515-32852:1:exon

XP_048146373.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31566-32433:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:32515-32852:1:exon

LOC125319306
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319306
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125319306 isoform X3
translation: MAVALALSRAGHALGHALEVATGSCRQATALGTLLLPLDEPAACRGAGHSWEGFGPAPQAFALVHCGLGLAEEAAALGRRLYGGKMAAAGKMAAGGKMAAGEKMVSWYEMADESKMAPWYKMASGSKMAAGYTMGDEPKMAAGSKMAGGYTMGDEPKMAAGSGWAWPRPTWRPGAGFEPRRPRPSSLEWAEPPHANYGWDRPVTSEWAGPTGWSWGGAGRHLGRGGHAPLGGRGGHFEGGHFDGGHFEGRHFEHPGGHFEGGHVEGGHFEGRHVEGRHFEHPGGHFEGGHFEGRHVEPLHFGRPGRHFGGGHFDGGHLASPRAFPEADPALRSPERAPPVALSILYLLAVALLLTWHLLLVVTLTYRNTWARNAAGAALGWAAWAVTYRGWYRWPWSPGPPGWG
SIO_010081: LOC125319306
subclass of: SO_0000673
so part of: LOC125319306
location: join(31566..31921,31994..32852)
location: region:31566-32852:1
so has part: feature:31566-31921:1:exon
so has part: feature:31994-32852:1:exon

XP_048146372.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31566-31921:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:31994-32852:1:exon

LOC125319283
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319283
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(47400..60092)
location: region:47400-60092:-1
so has part: feature:47400-60092:-1:exon
subclass of: SO_0000010

125319283
type: Gene
SIO_000068: ncbigene

position:47400:-1
position: 47400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60092:-1
position: 60092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47400-60092:-1:exon

LOC125319283
type: Constant Region
subclass of: SO_0001834
RO_0002162: 134902
gene: LOC125319283
standard name: immunoglobulin heavy constant epsilon-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
SIO_010081: LOC125319283
subclass of: SO_0000673
so part of: LOC125319283
location: complement(join(47400..47978,50009..50329,51937..52244,53077..53214,53307..53354,54493..54786,59186..59242,60020..60092))
location: region:47400-60092:-1
so has part: feature:60020-60092:-1:exon
so has part: feature:59186-59242:-1:exon
so has part: feature:54493-54786:-1:exon
so has part: feature:53307-53354:-1:exon
so has part: feature:53077-53214:-1:exon
so has part: feature:51937-52244:-1:exon
so has part: feature:50009-50329:-1:exon
so has part: feature:47400-47978:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:60020-60092:-1:exon

position:60020:-1
position: 60020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:59186-59242:-1:exon

position:59186:-1
position: 59186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59242:-1
position: 59242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:54493-54786:-1:exon

position:54493:-1
position: 54493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54786:-1
position: 54786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:53307-53354:-1:exon

position:53307:-1
position: 53307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53354:-1
position: 53354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:53077-53214:-1:exon

position:53077:-1
position: 53077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53214:-1
position: 53214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:51937-52244:-1:exon

position:51937:-1
position: 51937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52244:-1
position: 52244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:50009-50329:-1:exon

position:50009:-1
position: 50009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50329:-1
position: 50329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:47400-47978:-1:exon

position:47978:-1
position: 47978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125319283
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319283
exception: rearrangement required for product
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: immunoglobulin heavy constant epsilon-like
SIO_010081: LOC125319283
subclass of: SO_0000673
so part of: LOC125319283
location: complement(join(47596..47978,50009..50329,51937..52244,53077..53214,53307..53354,54493..54786,59186..59242,60020..60092))
location: region:47596-60092:-1
so has part: feature:60020-60092:-1:exon
so has part: feature:59186-59242:-1:exon
so has part: feature:54493-54786:-1:exon
so has part: feature:53307-53354:-1:exon
so has part: feature:53077-53214:-1:exon
so has part: feature:51937-52244:-1:exon
so has part: feature:50009-50329:-1:exon
so has part: feature:47596-47978:-1:exon

position:47596:-1
position: 47596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60020-60092:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:59186-59242:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:54493-54786:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:53307-53354:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:53077-53214:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:51937-52244:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:50009-50329:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:47596-47978:-1:exon

LOC125319301
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319301
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 51330..51631
location: region:51330-51631:1
so has part: feature:51330-51631:1:exon
subclass of: SO_0000011

125319301
type: Gene
SIO_000068: ncbigene

position:51330:1
position: 51330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51631:1
position: 51631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51330-51631:1:exon

LOC125319301
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 134902
nc RNA class: lncRNA
gene: LOC125319301
product: uncharacterized LOC125319301
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007200657.1
SIO_010081: LOC125319301
subclass of: SO_0000673
so part of: LOC125319301
location: join(51330..51406,51467..51631)
location: region:51330-51631:1
so has part: feature:51330-51406:1:exon
so has part: feature:51467-51631:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:51330-51406:1:exon

position:51406:1
position: 51406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:51467-51631:1:exon

position:51467:1
position: 51467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319284
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319284
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 68104..77054
location: region:68104-77054:1
so has part: feature:68104-77054:1:exon
subclass of: SO_0000010

125319284
type: Gene
SIO_000068: ncbigene

position:68104:1
position: 68104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77054:1
position: 77054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68104-77054:1:exon

LOC125319284
type: Constant Region
subclass of: SO_0001834
RO_0002162: 134902
gene: LOC125319284
standard name: Ig alpha chain C region-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
SIO_010081: LOC125319284
subclass of: SO_0000673
so part of: LOC125319284
location: join(68104..68167,68712..68863,68910..68994,70602..70937,71955..72276,76610..77054)
location: region:68104-77054:1
so has part: feature:68104-68167:1:exon
so has part: feature:68712-68863:1:exon
so has part: feature:68910-68994:1:exon
so has part: feature:70602-70937:1:exon
so has part: feature:71955-72276:1:exon
so has part: feature:76610-77054:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:68104-68167:1:exon

position:68167:1
position: 68167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:68712-68863:1:exon

position:68712:1
position: 68712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68863:1
position: 68863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:68910-68994:1:exon

position:68910:1
position: 68910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68994:1
position: 68994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:70602-70937:1:exon

position:70602:1
position: 70602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70937:1
position: 70937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:71955-72276:1:exon

position:71955:1
position: 71955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72276:1
position: 72276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:76610-77054:1:exon

position:76610:1
position: 76610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319284
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319284
exception: rearrangement required for product
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Ig alpha chain C region-like
SIO_010081: LOC125319284
subclass of: SO_0000673
so part of: LOC125319284
location: join(68104..68167,68712..68863,68910..68994,70602..70937,71955..72276,76610..77005)
location: region:68104-77005:1
so has part: feature:68104-68167:1:exon
so has part: feature:68712-68863:1:exon
so has part: feature:68910-68994:1:exon
so has part: feature:70602-70937:1:exon
so has part: feature:71955-72276:1:exon
so has part: feature:76610-77005:1:exon

position:77005:1
position: 77005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68104-68167:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:68712-68863:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:68910-68994:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70602-70937:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:71955-72276:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:76610-77005:1:exon

LOC125319293
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319293
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(82127..84105)
location: region:82127-84105:-1
so has part: feature:82127-84105:-1:exon
subclass of: SO_0000011

125319293
type: Gene
SIO_000068: ncbigene

position:82127:-1
position: 82127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84105:-1
position: 84105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82127-84105:-1:exon

LOC125319293
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 134902
nc RNA class: lncRNA
gene: LOC125319293
product: uncharacterized LOC125319293
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007200649.1
SIO_010081: LOC125319293
subclass of: SO_0000673
so part of: LOC125319293
location: complement(join(82127..82278,83201..84105))
location: region:82127-84105:-1
so has part: feature:83201-84105:-1:exon
so has part: feature:82127-82278:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:83201-84105:-1:exon

position:83201:-1
position: 83201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:82127-82278:-1:exon

position:82278:-1
position: 82278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125319289
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319289
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(87832..129400)
location: region:87832-129400:-1
so has part: feature:87832-129400:-1:exon
subclass of: SO_0000010

125319289
type: Gene
SIO_000068: ncbigene

position:87832:-1
position: 87832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:129400:-1
position: 129400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:87832-129400:-1:exon

LOC125319289
type: Constant Region
subclass of: SO_0001834
RO_0002162: 134902
gene: LOC125319289
standard name: Ig mu chain C region-like, transcript variant X12
experiment: COORDINATES: polyA evidence [ECO:0006239]
SIO_010081: LOC125319289
subclass of: SO_0000673
so part of: LOC125319289
location: complement(join(87832..88257,90393..90725,91875..92210,94812..95117,103878..103921,129129..129400))
location: region:87832-129400:-1
so has part: feature:129129-129400:-1:exon
so has part: feature:103878-103921:-1:exon
so has part: feature:94812-95117:-1:exon
so has part: feature:91875-92210:-1:exon
so has part: feature:90393-90725:-1:exon
so has part: feature:87832-88257:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:129129-129400:-1:exon

position:129129:-1
position: 129129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:103878-103921:-1:exon

position:103878:-1
position: 103878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:103921:-1
position: 103921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:94812-95117:-1:exon

position:94812:-1
position: 94812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:95117:-1
position: 95117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:91875-92210:-1:exon

position:91875:-1
position: 91875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:92210:-1
position: 92210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:90393-90725:-1:exon

position:90393:-1
position: 90393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:90725:-1
position: 90725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:87832-88257:-1:exon

position:88257:-1
position: 88257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125319289
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319289
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Ig mu chain C region-like isoform X12
SIO_010081: LOC125319289
subclass of: SO_0000673
so part of: LOC125319289
location: complement(join(87854..88257,90393..90725,91875..92210,94812..95117,103878..103921,129129..129358))
location: region:87854-129358:-1
so has part: feature:129129-129358:-1:exon
so has part: feature:103878-103921:-1:exon
so has part: feature:94812-95117:-1:exon
so has part: feature:91875-92210:-1:exon
so has part: feature:90393-90725:-1:exon
so has part: feature:87854-88257:-1:exon

position:87854:-1
position: 87854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:129358:-1
position: 129358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:129129-129358:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:103878-103921:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:94812-95117:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:91875-92210:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:90393-90725:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:87854-88257:-1:exon

LOC125319290
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319290
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(97523..99290)
location: region:97523-99290:-1
so has part: feature:97523-99290:-1:exon
subclass of: SO_0000010

125319290
type: Gene
SIO_000068: ncbigene

position:97523:-1
position: 97523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99290:-1
position: 99290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97523-99290:-1:exon

LOC125319290
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 134902
gene: LOC125319290
product: uncharacterized LOC125319290, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_007200648.1
SIO_010081: LOC125319290
so part of: LOC125319290
location: complement(join(97523..97718,98047..99290))
location: region:97523-99290:-1
so has part: feature:98047-99290:-1:exon
so has part: feature:97523-97718:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:98047-99290:-1:exon

position:98047:-1
position: 98047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:97523-97718:-1:exon

position:97718:-1
position: 97718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125319290
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125319290
product: uncharacterized LOC125319290, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_048290408.1
SIO_010081: LOC125319290
subclass of: SO_0000673
so part of: LOC125319290
location: complement(join(97541..97718,98121..99290))
location: region:97541-99290:-1
so has part: feature:98121-99290:-1:exon
so has part: feature:97541-97718:-1:exon

position:97541:-1
position: 97541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98121-99290:-1:exon

position:98121:-1
position: 98121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:97541-97718:-1:exon

LOC125319290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319290
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125319290
translation: MGWELAALRAQTGLYWSVLGWTGPYWFVLGCTGLYWSVLVKLGWLRVPVLVSTGLYWFVLGRTGPVLDYTGLYWSVLVSTGQAGAAVGTHTGLYWSVLGCTGLYWPILVCTGQAGVAEGAHAGPILVLYWTILAYTGQYWSSWGSCRYPYWSVLVSPGLYWAVLVCTGLYWSVLGCTGLYWPILVCTGQAGVAEHAHAGPILVLYWAVLVPAHTGSVLVLYWSSWGSCGCLYWSVLGCTGLYWFVLGRTGPVLVRAVLVCTGPSSYWFYTGSVLVKLGQLGGLVLVPYWSCTGLYWSVLVRTGLYW
SIO_010081: LOC125319290
subclass of: SO_0000673
so part of: LOC125319290
location: complement(join(97641..97718,98121..98963))
location: region:97641-98963:-1
so has part: feature:98121-98963:-1:exon
so has part: feature:97641-97718:-1:exon

XP_048146365.1
type: Protein
SIO_000068: ncbiprotein

position:97641:-1
position: 97641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:98963:-1
position: 98963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98121-98963:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:97641-97718:-1:exon

LOC125319300
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319300
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 103878..132503
location: region:103878-132503:1
so has part: feature:103878-132503:1:exon
subclass of: SO_0000011

125319300
type: Gene
SIO_000068: ncbigene

position:103878:1
position: 103878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:132503:1
position: 132503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103878-132503:1:exon

LOC125319300
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 134902
nc RNA class: lncRNA
gene: LOC125319300
product: uncharacterized LOC125319300
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_007200656.1
SIO_010081: LOC125319300
subclass of: SO_0000673
so part of: LOC125319300
location: join(103878..103932,114109..114119,132443..132503)
location: region:103878-132503:1
so has part: feature:103878-103932:1:exon
so has part: feature:114109-114119:1:exon
so has part: feature:132443-132503:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:103878-103932:1:exon

position:103932:1
position: 103932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:114109-114119:1:exon

position:114109:1
position: 114109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:114119:1
position: 114119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:132443-132503:1:exon

position:132443:1
position: 132443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319295
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319295
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 106347..107135
location: region:106347-107135:1
so has part: feature:106347-107135:1:exon
subclass of: SO_0000011

125319295
type: Gene
SIO_000068: ncbigene

position:106347:1
position: 106347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:107135:1
position: 107135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106347-107135:1:exon

LOC125319295
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 134902
nc RNA class: lncRNA
gene: LOC125319295
product: uncharacterized LOC125319295
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007200651.1
SIO_010081: LOC125319295
subclass of: SO_0000673
so part of: LOC125319295
location: join(106347..106977,107021..107135)
location: region:106347-107135:1
so has part: feature:106347-106977:1:exon
so has part: feature:107021-107135:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:106347-106977:1:exon

position:106977:1
position: 106977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:107021-107135:1:exon

position:107021:1
position: 107021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319292
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319292
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(106971..108916)
location: region:106971-108916:-1
so has part: feature:106971-108916:-1:exon
subclass of: SO_0000010

125319292
type: Gene
SIO_000068: ncbigene

position:106971:-1
position: 106971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:108916:-1
position: 108916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106971-108916:-1:exon

LOC125319292
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 134902
gene: LOC125319292
standard name: immunoglobulin heavy variable 3-7-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
SIO_010081: LOC125319292
subclass of: SO_0000673
so part of: LOC125319292
location: complement(join(106971..107466,108366..108734,108824..108916))
location: region:106971-108916:-1
so has part: feature:108824-108916:-1:exon
so has part: feature:108366-108734:-1:exon
so has part: feature:106971-107466:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:108824-108916:-1:exon

position:108824:-1
position: 108824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:108366-108734:-1:exon

position:108366:-1
position: 108366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:108734:-1
position: 108734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:106971-107466:-1:exon

position:107466:-1
position: 107466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125319292
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319292
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: immunoglobulin heavy variable 3-7-like
SIO_010081: LOC125319292
subclass of: SO_0000673
so part of: LOC125319292
location: complement(join(108367..108734,108824..108878))
location: region:108367-108878:-1
so has part: feature:108824-108878:-1:exon
so has part: feature:108367-108734:-1:exon

position:108367:-1
position: 108367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:108878:-1
position: 108878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108824-108878:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:108367-108734:-1:exon

LOC125319294
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319294
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 117132..122966
location: region:117132-122966:1
so has part: feature:117132-122966:1:exon
subclass of: SO_0000011

125319294
type: Gene
SIO_000068: ncbigene

position:117132:1
position: 117132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122966:1
position: 122966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117132-122966:1:exon

LOC125319294
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 134902
nc RNA class: lncRNA
gene: LOC125319294
product: uncharacterized LOC125319294
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_007200650.1
SIO_010081: LOC125319294
subclass of: SO_0000673
so part of: LOC125319294
location: join(117132..117174,121430..121534,122893..122966)
location: region:117132-122966:1
so has part: feature:117132-117174:1:exon
so has part: feature:121430-121534:1:exon
so has part: feature:122893-122966:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:117132-117174:1:exon

position:117174:1
position: 117174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:121430-121534:1:exon

position:121430:1
position: 121430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121534:1
position: 121534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:122893-122966:1:exon

position:122893:1
position: 122893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319302
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319302
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 126400..129316
location: region:126400-129316:1
so has part: feature:126400-129316:1:exon
subclass of: SO_0000011

125319302
type: Gene
SIO_000068: ncbigene

position:126400:1
position: 126400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:129316:1
position: 129316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126400-129316:1:exon

LOC125319302
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 134902
nc RNA class: lncRNA
gene: LOC125319302
product: uncharacterized LOC125319302
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007200658.1
SIO_010081: LOC125319302
subclass of: SO_0000673
so part of: LOC125319302
location: join(126400..126477,129285..129316)
location: region:126400-129316:1
so has part: feature:126400-126477:1:exon
so has part: feature:129285-129316:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:126400-126477:1:exon

position:126477:1
position: 126477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:129285-129316:1:exon

position:129285:1
position: 129285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319296
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319296
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 136900..143478
location: region:136900-143478:1
so has part: feature:136900-143478:1:exon
subclass of: SO_0000011

125319296
type: Gene
SIO_000068: ncbigene

position:136900:1
position: 136900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:143478:1
position: 143478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136900-143478:1:exon

LOC125319296
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 134902
nc RNA class: lncRNA
gene: LOC125319296
product: uncharacterized LOC125319296, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_007200653.1
SIO_010081: LOC125319296
subclass of: SO_0000673
so part of: LOC125319296
location: join(136900..136946,138494..138598,143392..143478)
location: region:136900-143478:1
so has part: feature:136900-136946:1:exon
so has part: feature:138494-138598:1:exon
so has part: feature:143392-143478:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:136900-136946:1:exon

position:136946:1
position: 136946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:138494-138598:1:exon

position:138494:1
position: 138494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138598:1
position: 138598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:143392-143478:1:exon

position:143392:1
position: 143392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319296
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 134902
nc RNA class: lncRNA
gene: LOC125319296
product: uncharacterized LOC125319296, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_007200652.1
SIO_010081: LOC125319296
subclass of: SO_0000673
so part of: LOC125319296
location: join(138441..138493,141301..141405,143392..143468)
location: region:138441-143468:1
so has part: feature:138441-138493:1:exon
so has part: feature:141301-141405:1:exon
so has part: feature:143392-143468:1:exon

position:138441:1
position: 138441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:143468:1
position: 143468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138441-138493:1:exon

position:138493:1
position: 138493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:141301-141405:1:exon

position:141301:1
position: 141301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:141405:1
position: 141405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:143392-143468:1:exon

LOC125319291
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319291
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(142827..159358)
location: region:142827-159358:-1
so has part: feature:142827-159358:-1:exon
subclass of: SO_0000010

125319291
type: Gene
SIO_000068: ncbigene

position:142827:-1
position: 142827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:159358:-1
position: 159358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:142827-159358:-1:exon

LOC125319291
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 134902
gene: LOC125319291
standard name: Ig heavy chain V region MOPC 21-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
SIO_010081: LOC125319291
subclass of: SO_0000673
so part of: LOC125319291
location: complement(join(142827..143432,152623..152652,159346..159358))
location: region:142827-159358:-1
so has part: feature:159346-159358:-1:exon
so has part: feature:152623-152652:-1:exon
so has part: feature:142827-143432:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:159346-159358:-1:exon

position:159346:-1
position: 159346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:152623-152652:-1:exon

position:152623:-1
position: 152623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152652:-1
position: 152652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:142827-143432:-1:exon

position:143432:-1
position: 143432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125319291
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319291
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Ig heavy chain V region MOPC 21-like
SIO_010081: LOC125319291
subclass of: SO_0000673
so part of: LOC125319291
location: complement(join(142962..143432,152623..152652))
location: region:142962-152652:-1
so has part: feature:152623-152652:-1:exon
so has part: feature:142962-143432:-1:exon

position:142962:-1
position: 142962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:152623-152652:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:142962-143432:-1:exon

LOC125319299
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319299
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(145332..148434)
location: region:145332-148434:-1
so has part: feature:145332-148434:-1:exon
subclass of: SO_0000011

125319299
type: Gene
SIO_000068: ncbigene

position:145332:-1
position: 145332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148434:-1
position: 148434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:145332-148434:-1:exon

LOC125319299
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 134902
nc RNA class: lncRNA
gene: LOC125319299
product: uncharacterized LOC125319299, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007200655.1
SIO_010081: LOC125319299
subclass of: SO_0000673
so part of: LOC125319299
location: complement(join(145332..145436,148384..148434))
location: region:145332-148434:-1
so has part: feature:148384-148434:-1:exon
so has part: feature:145332-145436:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:148384-148434:-1:exon

position:148384:-1
position: 148384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:145332-145436:-1:exon

position:145436:-1
position: 145436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125319299
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 134902
nc RNA class: lncRNA
gene: LOC125319299
product: uncharacterized LOC125319299, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007200654.1
SIO_010081: LOC125319299
subclass of: SO_0000673
so part of: LOC125319299
location: complement(join(145332..145436,146890..146941))
location: region:145332-146941:-1
so has part: feature:146890-146941:-1:exon
so has part: feature:145332-145436:-1:exon

position:146941:-1
position: 146941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:146890-146941:-1:exon

position:146890:-1
position: 146890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:145332-145436:-1:exon

LOC125319305
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319305
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 173057..175264
location: region:173057-175264:1
so has part: feature:173057-175264:1:exon
subclass of: SO_0000010

125319305
type: Gene
SIO_000068: ncbigene

position:173057:1
position: 173057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:175264:1
position: 175264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:173057-175264:1:exon

LOC125319305
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125319305
product: sal-like protein 3, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048290411.1
SIO_010081: LOC125319305
subclass of: SO_0000673
so part of: LOC125319305
location: join(173057..173932,174270..174952,175075..175264)
location: region:173057-175264:1
so has part: feature:173057-173932:1:exon
so has part: feature:174270-174952:1:exon
so has part: feature:175075-175264:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:173057-173932:1:exon

position:173932:1
position: 173932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:174270-174952:1:exon

position:174270:1
position: 174270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:174952:1
position: 174952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:175075-175264:1:exon

position:175075:1
position: 175075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125319305
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125319305
product: sal-like protein 3, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048290412.1
SIO_010081: LOC125319305
subclass of: SO_0000673
so part of: LOC125319305
location: join(173057..173526,173587..173932,174270..174952,175075..175264)
location: region:173057-175264:1
so has part: feature:173057-173526:1:exon
so has part: feature:173587-173932:1:exon
so has part: feature:174270-174952:1:exon
so has part: feature:175075-175264:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:173057-173526:1:exon

position:173526:1
position: 173526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:173587-173932:1:exon

position:173587:1
position: 173587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:174270-174952:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:175075-175264:1:exon

LOC125319305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319305
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sal-like protein 3 isoform X1
translation: MAPPAPPELRLILEELRQLHQRQLLQMQLTQDICRQLLLLGALEPPRPPQKPPPGPHFLLFPPFPKPQRSGIAVALASTLGSMTSLASTLGSSLGSTSSLGSAASLGSTAGSALGSSSSLGSTLGSRSSLGSTLGSSPSLGSTLGSRSTLGSTLGSSSSLGSTLGSRSTLGSTLGSSPSLAPALPPLGSPSPLAPRPAPPRPPSAAGPRHGCGFCGKPFGSASARQIHLRSHTGERPFRCDLCGGRFTTRGNLKVHLRRHRERGPAPRRGDGDGGGGAPRAEVPPEVTDPPQPPATPPLPSPGGQEVKPSPAPFPKLLLLRPPGPAHDENAPPPPGPAPNPRGPALSETSKLQELVEKLEFPEFPPSCPSPSCQGSFRNIPGAVLGGNPAISGGGSLGFGRELSEFGRESLGFGREFSGFGRELPNPGREPPGFGREFSGFGASPTCARCVGVAGPTPGGTGTPKIRAGPQNWGGWGRCRRKRRMRKKKWRGQTPPKCRETPRTRMEEGRCPQTGPRLPLATRGTPKLRGSSLGIGETPKFPSGPPKFPCDPQNSSPLMYRPIKAVC
SIO_010081: LOC125319305
subclass of: SO_0000673
so part of: LOC125319305
location: join(173087..173932,174270..174952,175075..175249)
location: region:173087-175249:1
so has part: feature:173087-173932:1:exon
so has part: feature:174270-174952:1:exon
so has part: feature:175075-175249:1:exon

XP_048146368.1
type: Protein
SIO_000068: ncbiprotein

position:173087:1
position: 173087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:175249:1
position: 175249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:173087-173932:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:174270-174952:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:175075-175249:1:exon

LOC125319305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125319305
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sal-like protein 3 isoform X2
translation: MAPPAPPELRLILEELRQLHQRQLLQMQLTQDICRQLLLLGALEPPRPPQKPPPGPHFLLFPPFPKPQRSGIAVALASTLGSMTSLASTLGSSLGSTSSLGSAASLGSTAGSALGSSSSLGSTLGSRSSLGSTLGSSPSLGSTLGSRSTLGSTLGSSPSLAPALPPLGSPSPLAPRPAPPRPPSAAGPRHGCGFCGKPFGSASARQIHLRSHTGERPFRCDLCGGRFTTRGNLKVHLRRHRERGPAPRRGDGDGGGGAPRAEVPPEVTDPPQPPATPPLPSPGGQEVKPSPAPFPKLLLLRPPGPAHDENAPPPPGPAPNPRGPALSETSKLQELVEKLEFPEFPPSCPSPSCQGSFRNIPGAVLGGNPAISGGGSLGFGRELSEFGRESLGFGREFSGFGRELPNPGREPPGFGREFSGFGASPTCARCVGVAGPTPGGTGTPKIRAGPQNWGGWGRCRRKRRMRKKKWRGQTPPKCRETPRTRMEEGRCPQTGPRLPLATRGTPKLRGSSLGIGETPKFPSGPPKFPCDPQNSSPLMYRPIKAVC
SIO_010081: LOC125319305
subclass of: SO_0000673
so part of: LOC125319305
location: join(173087..173526,173587..173932,174270..174952,175075..175249)
location: region:173087-175249:1
so has part: feature:173087-173526:1:exon
so has part: feature:173587-173932:1:exon
so has part: feature:174270-174952:1:exon
so has part: feature:175075-175249:1:exon

XP_048146369.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:173087-173526:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:173587-173932:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:174270-174952:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:175075-175249:1:exon

METTL3
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: METTL3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 175934..186689
location: region:175934-186689:1
so has part: feature:175934-186689:1:exon
subclass of: SO_0000010

125319281
type: Gene
SIO_000068: ncbigene

position:175934:1
position: 175934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:186689:1
position: 186689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:175934-186689:1:exon

METTL3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: METTL3
product: methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
transcript id: XM_048290400.1
SIO_010081: METTL3
subclass of: SO_0000673
so part of: METTL3
location: join(175934..176136,176559..176830,179246..179602,181235..181411,182479..182702,183340..183527,183882..183920,184011..184119,184501..184566,186286..186398,186486..186689)
location: region:175934-186689:1
so has part: feature:175934-176136:1:exon
so has part: feature:176559-176830:1:exon
so has part: feature:179246-179602:1:exon
so has part: feature:181235-181411:1:exon
so has part: feature:182479-182702:1:exon
so has part: feature:183340-183527:1:exon
so has part: feature:183882-183920:1:exon
so has part: feature:184011-184119:1:exon
so has part: feature:184501-184566:1:exon
so has part: feature:186286-186398:1:exon
so has part: feature:186486-186689:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:175934-176136:1:exon

position:176136:1
position: 176136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:176559-176830:1:exon

position:176559:1
position: 176559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:176830:1
position: 176830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:179246-179602:1:exon

position:179246:1
position: 179246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:179602:1
position: 179602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:181235-181411:1:exon

position:181235:1
position: 181235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:181411:1
position: 181411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:182479-182702:1:exon

position:182479:1
position: 182479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:182702:1
position: 182702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:183340-183527:1:exon

position:183340:1
position: 183340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:183527:1
position: 183527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:183882-183920:1:exon

position:183882:1
position: 183882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:183920:1
position: 183920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:184011-184119:1:exon

position:184011:1
position: 184011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:184119:1
position: 184119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:184501-184566:1:exon

position:184501:1
position: 184501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:184566:1
position: 184566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:186286-186398:1:exon

position:186286:1
position: 186286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:186398:1
position: 186398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:186486-186689:1:exon

position:186486:1
position: 186486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

METTL3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: METTL3
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: N6-adenosine-methyltransferase catalytic subunit
translation: MSDTWSSIQAHKKQLDSLRERLQRRRKQDPLGGTDPRHDLSLATPPRTCSPAPAGPAPPGPASGGVSSLGPAPTGAPSPPGGPEGLPGEPSEPDPALERRLLLHLSDLALPLPTDAGAIRAAIAGGDAQVTLRAVESLLHKFAAQELIEVRRGLLHDGPTLVTFADHSKLSAMTGVVAAEKRRAEQDGGAGGGAAGGGGGGGAGGAAGEGKEAKKSRRAAASDVDLEIESLLSQQSTKEQQSKKVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDHGTKEECVKASGAERPCRKLHFRRIINKHTDESLGDCSFLNTCFHMDTCKYVHYEIDACAVTPPRSPTGRGRATAPPPPDLPRGPPPDAGADLFPPQWICCDIRYLDVSILGKFAVVMADPPWDIHMELPYGTLTDDEMRRLNIPVLQDEGFLFLWVTGRAMELGRECLNLWGYERVDEIIWVKTNQLQRIIRTGRTGHWLNHGKEHCLVGVKGNPQGFNRGLDCDVIVAEVRSTSHKPDEIYGMIERLSPGTRKIELFGRPHNVQPNWITLGNQLDGIHLLDPDVVAQFKQHYPDGIISKPKNM
SIO_010081: METTL3
subclass of: SO_0000673
so part of: METTL3
location: join(176034..176136,176559..176830,179246..179602,181235..181411,182479..182702,183340..183527,183882..183920,184011..184119,184501..184566,186286..186398,186486..186597)
location: region:176034-186597:1
so has part: feature:176034-176136:1:exon
so has part: feature:176559-176830:1:exon
so has part: feature:179246-179602:1:exon
so has part: feature:181235-181411:1:exon
so has part: feature:182479-182702:1:exon
so has part: feature:183340-183527:1:exon
so has part: feature:183882-183920:1:exon
so has part: feature:184011-184119:1:exon
so has part: feature:184501-184566:1:exon
so has part: feature:186286-186398:1:exon
so has part: feature:186486-186597:1:exon

XP_048146357.1
type: Protein
SIO_000068: ncbiprotein

position:176034:1
position: 176034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:186597:1
position: 186597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:176034-176136:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:176559-176830:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:179246-179602:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:181235-181411:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:182479-182702:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:183340-183527:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:183882-183920:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:184011-184119:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:184501-184566:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:186286-186398:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:186486-186597:1:exon

LOC125319282
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319282
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 185460..186059
location: region:185460-186059:1
so has part: feature:185460-186059:1:exon
subclass of: SO_0000011

125319282
type: Gene
SIO_000068: ncbigene

position:185460:1
position: 185460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:186059:1
position: 186059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185460-186059:1:exon

LOC125319282
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 134902
nc RNA class: lncRNA
gene: LOC125319282
product: uncharacterized LOC125319282
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007200647.1
SIO_010081: LOC125319282
subclass of: SO_0000673
so part of: LOC125319282
location: join(185460..185957,185991..186059)
location: region:185460-186059:1
so has part: feature:185460-185957:1:exon
so has part: feature:185991-186059:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:185460-185957:1:exon

position:185957:1
position: 185957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:185991-186059:1:exon

position:185991:1
position: 185991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TOX4
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: TOX4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(187343..201009)
location: region:187343-201009:-1
so has part: feature:187343-201009:-1:exon
subclass of: SO_0000010

125319285
type: Gene
SIO_000068: ncbigene

position:187343:-1
position: 187343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:201009:-1
position: 201009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187343-201009:-1:exon

TOX4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: TOX4
product: TOX high mobility group box family member 4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048290402.1
SIO_010081: TOX4
subclass of: SO_0000673
so part of: TOX4
location: complement(join(187343..187521,187617..187777,189452..189476,192071..192310,192468..192489,194447..194677,196806..196869,200741..201009))
location: region:187343-201009:-1
so has part: feature:200741-201009:-1:exon
so has part: feature:196806-196869:-1:exon
so has part: feature:194447-194677:-1:exon
so has part: feature:192468-192489:-1:exon
so has part: feature:192071-192310:-1:exon
so has part: feature:189452-189476:-1:exon
so has part: feature:187617-187777:-1:exon
so has part: feature:187343-187521:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:200741-201009:-1:exon

position:200741:-1
position: 200741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:196806-196869:-1:exon

position:196806:-1
position: 196806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:196869:-1
position: 196869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:194447-194677:-1:exon

position:194447:-1
position: 194447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:194677:-1
position: 194677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:192468-192489:-1:exon

position:192468:-1
position: 192468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:192489:-1
position: 192489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:192071-192310:-1:exon

position:192071:-1
position: 192071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:192310:-1
position: 192310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:189452-189476:-1:exon

position:189452:-1
position: 189452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:189476:-1
position: 189476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:187617-187777:-1:exon

position:187617:-1
position: 187617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:187777:-1
position: 187777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:187343-187521:-1:exon

position:187521:-1
position: 187521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TOX4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: TOX4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TOX high mobility group box family member 4
translation: MEFPGGSDNYLAITGASHPFLSGAQTFHTPSLGDEEFEIPPIPLDSDPSLAVVGHFEDLPEPGGPPEPPFAPPPYGVAGLELPVGLPPGIMEQGGGATQHGCNPWLSGSPLGALSPGALLGPAGALTTIDQSELSSQLGLGLGGAAATPPGPAPGPAPAPPSPERGLSPGPRPPRALCRTRSSRTSAGSGADVVPEVESPPQVELVAESPVAAESPRSRCVRAGCENPPVASGDWDEEFCSSECLVRHCRDVFLAWLAARNAGNSVVFVK
SIO_010081: TOX4
subclass of: SO_0000673
so part of: TOX4
location: complement(join(187458..187521,187617..187777,189452..189476,192071..192310,192468..192489,194447..194677,196806..196869,200741..200746))
location: region:187458-200746:-1
so has part: feature:200741-200746:-1:exon
so has part: feature:196806-196869:-1:exon
so has part: feature:194447-194677:-1:exon
so has part: feature:192468-192489:-1:exon
so has part: feature:192071-192310:-1:exon
so has part: feature:189452-189476:-1:exon
so has part: feature:187617-187777:-1:exon
so has part: feature:187458-187521:-1:exon

XP_048146359.1
type: Protein
SIO_000068: ncbiprotein

position:187458:-1
position: 187458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:200746:-1
position: 200746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:200741-200746:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:196806-196869:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:194447-194677:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:192468-192489:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:192071-192310:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:189452-189476:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:187617-187777:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:187458-187521:-1:exon

CHD8
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: CHD8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 206716..257079
location: region:206716-257079:1
so has part: feature:206716-257079:1:exon
subclass of: SO_0000010

125319286
type: Gene
SIO_000068: ncbigene

position:206716:1
position: 206716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:257079:1
position: 257079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206716-257079:1:exon

CHD8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: CHD8
product: chromodomain helicase DNA binding protein 8
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048290403.1
SIO_010081: CHD8
subclass of: SO_0000673
so part of: CHD8
location: join(206716..206812,206942..207322,208165..208540,209700..210045,210972..211086,211167..211349,213961..214029,214136..214191,216267..216384,216802..216885,217580..217717,218999..219120,220816..221059,222687..222863,223558..223701,224993..225248,227214..227427,228118..228313,228938..229105,229690..229869,230118..230228,230319..230578,232290..232489,234000..234159,235150..235239,236145..236248,237508..237622,238722..238857,238923..238977,247460..247655,248558..248766,249914..249962,250096..250136,252996..253298,254851..255299,255421..255636,255767..255869,256258..256377,256486..256524,256804..257079)
location: region:206716-257079:1
so has part: feature:206716-206812:1:exon
so has part: feature:206942-207322:1:exon
so has part: feature:208165-208540:1:exon
so has part: feature:209700-210045:1:exon
so has part: feature:210972-211086:1:exon
so has part: feature:211167-211349:1:exon
so has part: feature:213961-214029:1:exon
so has part: feature:214136-214191:1:exon
so has part: feature:216267-216384:1:exon
so has part: feature:216802-216885:1:exon
so has part: feature:217580-217717:1:exon
so has part: feature:218999-219120:1:exon
so has part: feature:220816-221059:1:exon
so has part: feature:222687-222863:1:exon
so has part: feature:223558-223701:1:exon
so has part: feature:224993-225248:1:exon
so has part: feature:227214-227427:1:exon
so has part: feature:228118-228313:1:exon
so has part: feature:228938-229105:1:exon
so has part: feature:229690-229869:1:exon
so has part: feature:230118-230228:1:exon
so has part: feature:230319-230578:1:exon
so has part: feature:232290-232489:1:exon
so has part: feature:234000-234159:1:exon
so has part: feature:235150-235239:1:exon
so has part: feature:236145-236248:1:exon
so has part: feature:237508-237622:1:exon
so has part: feature:238722-238857:1:exon
so has part: feature:238923-238977:1:exon
so has part: feature:247460-247655:1:exon
so has part: feature:248558-248766:1:exon
so has part: feature:249914-249962:1:exon
so has part: feature:250096-250136:1:exon
so has part: feature:252996-253298:1:exon
so has part: feature:254851-255299:1:exon
so has part: feature:255421-255636:1:exon
so has part: feature:255767-255869:1:exon
so has part: feature:256258-256377:1:exon
so has part: feature:256486-256524:1:exon
so has part: feature:256804-257079:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:206716-206812:1:exon

position:206812:1
position: 206812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:206942-207322:1:exon

position:206942:1
position: 206942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207322:1
position: 207322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:208165-208540:1:exon

position:208165:1
position: 208165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:208540:1
position: 208540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:209700-210045:1:exon

position:209700:1
position: 209700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210045:1
position: 210045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:210972-211086:1:exon

position:210972:1
position: 210972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211086:1
position: 211086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:211167-211349:1:exon

position:211167:1
position: 211167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211349:1
position: 211349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:213961-214029:1:exon

position:213961:1
position: 213961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214029:1
position: 214029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:214136-214191:1:exon

position:214136:1
position: 214136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214191:1
position: 214191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:216267-216384:1:exon

position:216267:1
position: 216267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:216384:1
position: 216384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:216802-216885:1:exon

position:216802:1
position: 216802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:216885:1
position: 216885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:217580-217717:1:exon

position:217580:1
position: 217580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:217717:1
position: 217717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:218999-219120:1:exon

position:218999:1
position: 218999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:219120:1
position: 219120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:220816-221059:1:exon

position:220816:1
position: 220816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:221059:1
position: 221059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:222687-222863:1:exon

position:222687:1
position: 222687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:222863:1
position: 222863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:223558-223701:1:exon

position:223558:1
position: 223558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:223701:1
position: 223701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:224993-225248:1:exon

position:224993:1
position: 224993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:225248:1
position: 225248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:227214-227427:1:exon

position:227214:1
position: 227214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227427:1
position: 227427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:228118-228313:1:exon

position:228118:1
position: 228118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:228313:1
position: 228313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:228938-229105:1:exon

position:228938:1
position: 228938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229105:1
position: 229105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:229690-229869:1:exon

position:229690:1
position: 229690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229869:1
position: 229869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:230118-230228:1:exon

position:230118:1
position: 230118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:230228:1
position: 230228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:230319-230578:1:exon

position:230319:1
position: 230319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:230578:1
position: 230578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:232290-232489:1:exon

position:232290:1
position: 232290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:232489:1
position: 232489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:234000-234159:1:exon

position:234000:1
position: 234000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:234159:1
position: 234159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:235150-235239:1:exon

position:235150:1
position: 235150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:235239:1
position: 235239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:236145-236248:1:exon

position:236145:1
position: 236145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:236248:1
position: 236248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:237508-237622:1:exon

position:237508:1
position: 237508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:237622:1
position: 237622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:238722-238857:1:exon

position:238722:1
position: 238722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:238857:1
position: 238857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:238923-238977:1:exon

position:238923:1
position: 238923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:238977:1
position: 238977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:247460-247655:1:exon

position:247460:1
position: 247460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:247655:1
position: 247655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:248558-248766:1:exon

position:248558:1
position: 248558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248766:1
position: 248766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:249914-249962:1:exon

position:249914:1
position: 249914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:249962:1
position: 249962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:250096-250136:1:exon

position:250096:1
position: 250096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250136:1
position: 250136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:252996-253298:1:exon

position:252996:1
position: 252996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:253298:1
position: 253298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:254851-255299:1:exon

position:254851:1
position: 254851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255299:1
position: 255299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:255421-255636:1:exon

position:255421:1
position: 255421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255636:1
position: 255636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:255767-255869:1:exon

position:255767:1
position: 255767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255869:1
position: 255869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:256258-256377:1:exon

position:256258:1
position: 256258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:256377:1
position: 256377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:256486-256524:1:exon

position:256486:1
position: 256486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:256524:1
position: 256524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 40
SIO_000628: feature:256804-257079:1:exon

position:256804:1
position: 256804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CHD8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: CHD8
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 8
translation: MADPIMDLFDDPNLFGLDPLPEDLVAPPNPPPIRATPSWGSPPLLLPPPPAAGGPPKIVILKAPPPGGPAPAAPNGGKVTLAKVLGGTPPQIRPGVPVAGGGRWSQGRGASGGSAAPPARALLQSGRPVKQLVLQPLKAGAGSTPGTPLKPGLSLGPAQGESKRITLVLQQPGAGAAPGQRHVVLGTLPGKLLVQGGGAAAAPGPAKAAPGAPAKVVTIQLQVQPPAAPGQPGQPQKIQLIQQAGAGPVGVASVPQVVGGAGQRLTVPLKVVLQPQVSVGRGGAAGLSVVKVLSGAEVAAVAAPAARGPSDESRKLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEDEGERKRRRKGPGERGAAKEERPRRGKGQGGSKSKGRGKASTITPVVGKKRKRNASSDNSDSEVLPAPSPRHDDDSSVQKRRSNRQVKRKKYTEDLDIKITDDEEDEELDVTGPARPEQPPAPPPPEHDGDALPSMQFFVENPSEEDAAIVDKVLSMRVVKKELPSGQLVESEEFFVKYKNYSYLHCEWATIAQLEKDKRIHQKLKRFKTKMNQMRHFFHEDEEPFNPDYVEVDRILDESHSVDKDNGEPVVYYLVKWCSLPYEDSTWELQEDVDEAKIAEFRRIQARHPELKRQPRPQAGAWKKLEASHEYKNHNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVHGAGVRGPFLVIAPLSTITNWEREFGTWTGLNTIVYHGSLASRQMIQQYEMYCKDTKGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVVIDEAHRLKNRHCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPTQFPSEAEFLKDFGDLKTEEQVQKLQALLKPMMLRRLKEDVEKNLAPKQETIIEVELTNAQKRLYRAILERNFAYLARGAGHGNVPNLLNTMMELRKCCNHPYLINGAEEQIVAELRESLPTPAPPDLALQALVRSAGKLVLLDKLLPRLRAGGHKVLVFSQMVRCLDILEDYLIQKRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGREGNITGIQQFSKKEIEDLLRKGAYAAIMDEDDEGAKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDIALDDPNFWQKWAKKADLDLDLLNSKNTLVIDTPRVRKQTRHFSTLRDDDLVEFSDLDSDDDLDRLDRATRSRRGHHGGGHHHGHHQHAPPAAPQPFGRSDCFRVEKHLMVYGWGRWRELAAQGRFKRRLSERDVEGLSRAIVLFCLLHFRGDDGVRAFAWALLAPPENGRARPALGHPGAAVPPPLPRGRKGKKAPKVPPEPSGAEWPRGHEPEALLQDEGYRKHLRHQSSKVLLRLRMLHFLRHEVIGDQAEKVLAGASASDVHIWFPLLEQLEVPTAWWDPEADKSLLIGVFKHGYERYHTMRADPALCFLAKAGGPDATAVAAEQRLEGPEGADFDKDPEDPEYKPLQGGRRGGKKKGGKCPKIPRNPPNSLKFPGFSDPLAGLDEEISVVDGDEGPPAGSGPQPPWPAGSALTARFRRLIGACQRAGSREQPREPPRDPPGERRRQRRGHDGARRDKQQRWTRREQADFLRVASTFGVELEPGSGRFRWGRFRALANLERRSDEDLTRFYHGFVAMCRQVCRLPPAPGDVPPPLSPPPLAVSPAPLATAAVPAAPGRVPVPPPLSPPPLAVSPALALRCLRRLALLRCLRERVLPHPALGSLLARVPPPAPPLPPWWLRGVHDAELLRAAARHGLRGALLRGGITPGGRGAEPAPPGSGDGGGGGGRTRERKVEKGEENPKFWGFKRGSQTCGIPRELLGEIWREKSPNWGRKNGGKAENPPKFGRGGDWTGKTPKSREGEIFWGGSERFWGPPRAGPEPLED…
SIO_010081: CHD8
subclass of: SO_0000673
so part of: CHD8
location: join(206716..206812,206942..207322,208165..208540,209700..210045,210972..211086,211167..211349,213961..214029,214136..214191,216267..216384,216802..216885,217580..217717,218999..219120,220816..221059,222687..222863,223558..223701,224993..225248,227214..227427,228118..228313,228938..229105,229690..229869,230118..230228,230319..230578,232290..232489,234000..234159,235150..235239,236145..236248,237508..237622,238722..238857,238923..238977,247460..247655,248558..248766,249914..249962,250096..250136,252996..253298,254851..255299,255421..255636,255767..255869,256258..256377,256486..256524,256804..257006)
location: region:206716-257006:1
so has part: feature:206716-206812:1:exon
so has part: feature:206942-207322:1:exon
so has part: feature:208165-208540:1:exon
so has part: feature:209700-210045:1:exon
so has part: feature:210972-211086:1:exon
so has part: feature:211167-211349:1:exon
so has part: feature:213961-214029:1:exon
so has part: feature:214136-214191:1:exon
so has part: feature:216267-216384:1:exon
so has part: feature:216802-216885:1:exon
so has part: feature:217580-217717:1:exon
so has part: feature:218999-219120:1:exon
so has part: feature:220816-221059:1:exon
so has part: feature:222687-222863:1:exon
so has part: feature:223558-223701:1:exon
so has part: feature:224993-225248:1:exon
so has part: feature:227214-227427:1:exon
so has part: feature:228118-228313:1:exon
so has part: feature:228938-229105:1:exon
so has part: feature:229690-229869:1:exon
so has part: feature:230118-230228:1:exon
so has part: feature:230319-230578:1:exon
so has part: feature:232290-232489:1:exon
so has part: feature:234000-234159:1:exon
so has part: feature:235150-235239:1:exon
so has part: feature:236145-236248:1:exon
so has part: feature:237508-237622:1:exon
so has part: feature:238722-238857:1:exon
so has part: feature:238923-238977:1:exon
so has part: feature:247460-247655:1:exon
so has part: feature:248558-248766:1:exon
so has part: feature:249914-249962:1:exon
so has part: feature:250096-250136:1:exon
so has part: feature:252996-253298:1:exon
so has part: feature:254851-255299:1:exon
so has part: feature:255421-255636:1:exon
so has part: feature:255767-255869:1:exon
so has part: feature:256258-256377:1:exon
so has part: feature:256486-256524:1:exon
so has part: feature:256804-257006:1:exon

XP_048146360.1
type: Protein
SIO_000068: ncbiprotein

position:257006:1
position: 257006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206716-206812:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:206942-207322:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:208165-208540:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:209700-210045:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210972-211086:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:211167-211349:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:213961-214029:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:214136-214191:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:216267-216384:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:216802-216885:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:217580-217717:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:218999-219120:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:220816-221059:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:222687-222863:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:223558-223701:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:224993-225248:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:227214-227427:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:228118-228313:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:228938-229105:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:229690-229869:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:230118-230228:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:230319-230578:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:232290-232489:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:234000-234159:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:235150-235239:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:236145-236248:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:237508-237622:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:238722-238857:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:238923-238977:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:247460-247655:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:248558-248766:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:249914-249962:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:250096-250136:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:252996-253298:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:254851-255299:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:255421-255636:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:255767-255869:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:256258-256377:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:256486-256524:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:256804-257006:1:exon

SUPT16H
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: SUPT16H
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <258333..277231
location: region:258333-277231:1
so has part: feature:258333-277231:1:exon
subclass of: SO_0000010

125319287
type: Gene
SIO_000068: ncbigene

position:258333:1
position: 258333
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:277231:1
position: 277231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258333-277231:1:exon

SUPT16H
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: SUPT16H
product: SPT16 homolog, facilitates chromatin remodeling subunit
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 6 bases in 6 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 88% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
transcript id: XM_048290404.1
SIO_010081: SUPT16H
subclass of: SO_0000673
so part of: SUPT16H
location: join(<258333..258472,260335..260428,262055..262225,263567..263719,263836..263983,264328..264479,264979..265152,265503..265593,266898..266971,267472..267584,267874..267939,268214..268309,268402..268517,268906..269059,269673..269800,269879..270015,271759..271886,274919..275037,275623..275749,276329..276441,277109..277231)
location: region:258333-277231:1
so has part: feature:258333-258472:1:exon
so has part: feature:260335-260428:1:exon
so has part: feature:262055-262225:1:exon
so has part: feature:263567-263719:1:exon
so has part: feature:263836-263983:1:exon
so has part: feature:264328-264479:1:exon
so has part: feature:264979-265152:1:exon
so has part: feature:265503-265593:1:exon
so has part: feature:266898-266971:1:exon
so has part: feature:267472-267584:1:exon
so has part: feature:267874-267939:1:exon
so has part: feature:268214-268309:1:exon
so has part: feature:268402-268517:1:exon
so has part: feature:268906-269059:1:exon
so has part: feature:269673-269800:1:exon
so has part: feature:269879-270015:1:exon
so has part: feature:271759-271886:1:exon
so has part: feature:274919-275037:1:exon
so has part: feature:275623-275749:1:exon
so has part: feature:276329-276441:1:exon
so has part: feature:277109-277231:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258333-258472:1:exon

position:258472:1
position: 258472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:260335-260428:1:exon

position:260335:1
position: 260335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:260428:1
position: 260428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:262055-262225:1:exon

position:262055:1
position: 262055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:262225:1
position: 262225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:263567-263719:1:exon

position:263567:1
position: 263567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:263719:1
position: 263719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:263836-263983:1:exon

position:263836:1
position: 263836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:263983:1
position: 263983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:264328-264479:1:exon

position:264328:1
position: 264328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:264479:1
position: 264479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:264979-265152:1:exon

position:264979:1
position: 264979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:265152:1
position: 265152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:265503-265593:1:exon

position:265503:1
position: 265503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:265593:1
position: 265593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:266898-266971:1:exon

position:266898:1
position: 266898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:266971:1
position: 266971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:267472-267584:1:exon

position:267472:1
position: 267472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:267584:1
position: 267584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:267874-267939:1:exon

position:267874:1
position: 267874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:267939:1
position: 267939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:268214-268309:1:exon

position:268214:1
position: 268214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:268309:1
position: 268309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:268402-268517:1:exon

position:268402:1
position: 268402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:268517:1
position: 268517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:268906-269059:1:exon

position:268906:1
position: 268906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:269059:1
position: 269059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:269673-269800:1:exon

position:269673:1
position: 269673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:269800:1
position: 269800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:269879-270015:1:exon

position:269879:1
position: 269879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:270015:1
position: 270015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:271759-271886:1:exon

position:271759:1
position: 271759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:271886:1
position: 271886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:274919-275037:1:exon

position:274919:1
position: 274919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:275037:1
position: 275037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:275623-275749:1:exon

position:275623:1
position: 275623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:275749:1
position: 275749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:276329-276441:1:exon

position:276329:1
position: 276329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:276441:1
position: 276441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:277109-277231:1:exon

position:277109:1
position: 277109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SUPT16H
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: SUPT16H
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 6 bases in 6 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: FACT complex subunit SPT16
translation: GPVGGGSRTSPEGAGGPLAPTGPPSWRSAWTARPFRGGCGGSTRAGRKGRTRFGAVDAVVVAVGVDEEIVYAKSTALQTWLFGYELTDTVMLFCEERVLFLASRKKVEFLKQVAQGKGGEGANGLPAVTLLVREKNESNKANFEKLIEALKSSRGGRRLGVFSKDKFPGEFMKSWNDALSKEGFEKVDVSAAVAQAMAAKEDVELQLMRKAAAITSEVFTKFFKERVMEIVDADEKVRHSKLAEAVEKAIEEKKYLAGADPSAVEMCYPPIIQSGGNYNLKFSVVSDKSHMHFGAITCSMGIRYKSYCSNLVRTLMVDPAQDMQDHYGFLLGLQDVLIRELRHGAKLCDVYAAVMDVVKKQRPELLXKITKNLGFAMGIEFREGSLVINSKNQQRLKKGMVFSINVGLSELPNKEGKRPEERTYALFIGDTVMVDEDGPAVVLTSVKKKVKNVGIFLKNEDEEEEEPDKDAAEDLLGRSSRAALLTERTRNELTAEEKRRAHQKELATQLNEDARRRLTEQRGEQQTQKARKSNVSYKSAALLPKEPHVREMKIYIDKKYESVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFFCPGSALGRNEGNIFPNPEATFVKEITYRASNLKPPGESTVPASNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGALEAHVNGFRFTSVRGDKVDILYNNIKHAVFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRELGFNGAPYRSTCLLQPTSSALVNCTEWVSDRWEPG
SIO_010081: SUPT16H
subclass of: SO_0000673
so part of: SUPT16H
location: join(<258333..258472,260335..260428,262055..262225,263567..263719,263836..263983,264328..264479,264979..265152,265503..265593,266898..266971,267472..267584,267874..267939,268214..268309,268402..268517,268906..269059,269673..269800,269879..270015,271759..271886,274919..275037,275623..275749,276329..276441,277109..277211)
location: region:258333-277211:1
so has part: feature:258333-258472:1:exon
so has part: feature:260335-260428:1:exon
so has part: feature:262055-262225:1:exon
so has part: feature:263567-263719:1:exon
so has part: feature:263836-263983:1:exon
so has part: feature:264328-264479:1:exon
so has part: feature:264979-265152:1:exon
so has part: feature:265503-265593:1:exon
so has part: feature:266898-266971:1:exon
so has part: feature:267472-267584:1:exon
so has part: feature:267874-267939:1:exon
so has part: feature:268214-268309:1:exon
so has part: feature:268402-268517:1:exon
so has part: feature:268906-269059:1:exon
so has part: feature:269673-269800:1:exon
so has part: feature:269879-270015:1:exon
so has part: feature:271759-271886:1:exon
so has part: feature:274919-275037:1:exon
so has part: feature:275623-275749:1:exon
so has part: feature:276329-276441:1:exon
so has part: feature:277109-277211:1:exon

XP_048146361.1
type: Protein
SIO_000068: ncbiprotein

position:277211:1
position: 277211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258333-258472:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:260335-260428:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:262055-262225:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:263567-263719:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:263836-263983:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:264328-264479:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:264979-265152:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:265503-265593:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:266898-266971:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:267472-267584:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:267874-267939:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:268214-268309:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:268402-268517:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:268906-269059:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:269673-269800:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:269879-270015:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:271759-271886:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:274919-275037:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:275623-275749:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:276329-276441:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:277109-277211:1:exon

TGM1
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: TGM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 281042..>332675
location: region:281042-332675:1
so has part: feature:281042-332675:1:exon
subclass of: SO_0000010

125319288
type: Gene
SIO_000068: ncbigene

position:281042:1
position: 281042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:332675:1
position: 332675
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281042-332675:1:exon

TGM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: TGM1
product: transglutaminase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048290405.1
SIO_010081: TGM1
subclass of: SO_0000673
so part of: TGM1
location: join(281042..281054,282524..282820,286839..287111,300405..300523,301843..301950,305457..305631,313128..313266,314994..315097,316833..316921,317055..317208,325579..325857,330150..330310,331495..331631,332297..>332675)
location: region:281042-332675:1
so has part: feature:281042-281054:1:exon
so has part: feature:282524-282820:1:exon
so has part: feature:286839-287111:1:exon
so has part: feature:300405-300523:1:exon
so has part: feature:301843-301950:1:exon
so has part: feature:305457-305631:1:exon
so has part: feature:313128-313266:1:exon
so has part: feature:314994-315097:1:exon
so has part: feature:316833-316921:1:exon
so has part: feature:317055-317208:1:exon
so has part: feature:325579-325857:1:exon
so has part: feature:330150-330310:1:exon
so has part: feature:331495-331631:1:exon
so has part: feature:332297-332675:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:281042-281054:1:exon

position:281054:1
position: 281054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:282524-282820:1:exon

position:282524:1
position: 282524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:282820:1
position: 282820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:286839-287111:1:exon

position:286839:1
position: 286839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:287111:1
position: 287111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:300405-300523:1:exon

position:300405:1
position: 300405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:300523:1
position: 300523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:301843-301950:1:exon

position:301843:1
position: 301843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:301950:1
position: 301950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:305457-305631:1:exon

position:305457:1
position: 305457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:305631:1
position: 305631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:313128-313266:1:exon

position:313128:1
position: 313128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:313266:1
position: 313266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:314994-315097:1:exon

position:314994:1
position: 314994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:315097:1
position: 315097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:316833-316921:1:exon

position:316833:1
position: 316833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:316921:1
position: 316921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:317055-317208:1:exon

position:317055:1
position: 317055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:317208:1
position: 317208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:325579-325857:1:exon

position:325579:1
position: 325579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:325857:1
position: 325857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:330150-330310:1:exon

position:330150:1
position: 330150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:330310:1
position: 330310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:331495-331631:1:exon

position:331495:1
position: 331495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:331631:1
position: 331631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:332297-332675:1:exon

position:332297:1
position: 332297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TGM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: TGM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein-glutamine gamma-glutamyltransferase K
translation: MAENVPPKTPIFPPPNLLFSPRRRRFARQDGGRAKPPPPGALLAGLLAPVRLRPGASANREAHHTQEFAQRPLVVRRGQRFHVGVALPRPLADGDALCFELTLGPTPQVAKGTHVLLPLGGSSATGWVAQLDEGVAEPVGGGAEHALWAWLQAPPTAPVGRYALSVRTRTEAGDFAAPFEAANDVVVLFNPWCPEDSVYMEQTSDLSEYVLNESGRIFYGTEDQIAERSWNYGQFEPGVLEASLFILDRRGMPHSARGDPVMVARVVSAMVNSLDDSGVLVGNWTGEYGAGTNPSAWAGSVGILRSFLSSGAPVRYGQCWVFAGVVTTVLRCLGLPTRTVTNYNSAHDTDASLTTDIYLDEGMRPLERLNTDSVWNFHVWNDCWMKRPDLPDGYDGWQVVDATPQETSSGLFCCGPCSVTAVKNGHVFLKYDTPFVFAEVNSDKVYWQRQAHGGFAVVHVEEGAIGRSISTLAAGAAGRVDITHLYKHPEGSEEERRAVSTATAHGSRPRNRAAASAGELTLTVAAGPAVAGAELELRALVRNQGLEPRTLRLRLSLCAVRYTGVAGAAFRQEQHRRTVPPGQEETVTMTVTYTEYQPHVGDQDALKLTVAGTVQETGQVLAKELRVQLHTPELTLTLLGPAVVGQEVSVQVVFQNPLPEPLTGASLRMEGAGISCPKPVSLGSVGAGQTLRLSQSVTPLRAGQRRLVAALESAALPPLHGSLQFEVAPGPTGSTGSTGSPPGRARRRRRRGEGPAGARGVELGALGGELGALGGVAGPMWVVLGALGGGTGSAGRRFGSYWERWEGVR
SIO_010081: TGM1
subclass of: SO_0000673
so part of: TGM1
location: join(281042..281054,282524..282820,286839..287111,300405..300523,301843..301950,305457..305631,313128..313266,314994..315097,316833..316921,317055..317208,325579..325857,330150..330310,331495..331631,332297..>332675)
location: region:281042-332675:1
so has part: feature:281042-281054:1:exon
so has part: feature:282524-282820:1:exon
so has part: feature:286839-287111:1:exon
so has part: feature:300405-300523:1:exon
so has part: feature:301843-301950:1:exon
so has part: feature:305457-305631:1:exon
so has part: feature:313128-313266:1:exon
so has part: feature:314994-315097:1:exon
so has part: feature:316833-316921:1:exon
so has part: feature:317055-317208:1:exon
so has part: feature:325579-325857:1:exon
so has part: feature:330150-330310:1:exon
so has part: feature:331495-331631:1:exon
so has part: feature:332297-332675:1:exon

XP_048146362.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:281042-281054:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:282524-282820:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:286839-287111:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:300405-300523:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:301843-301950:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:305457-305631:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:313128-313266:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:314994-315097:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:316833-316921:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:317055-317208:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:325579-325857:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:330150-330310:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:331495-331631:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:332297-332675:1:exon

LOC125319303
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125319303
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 332879..333229
location: region:332879-333229:1
so has part: feature:332879-333229:1:exon
subclass of: SO_0000011

125319303
type: Gene
SIO_000068: ncbigene

position:332879:1
position: 332879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:333229:1
position: 333229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:332879-333229:1:exon

LOC125319303
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 134902
nc RNA class: lncRNA
gene: LOC125319303
product: uncharacterized LOC125319303
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007200659.1
SIO_010081: LOC125319303
subclass of: SO_0000673
so part of: LOC125319303
location: join(332879..332937,333001..333229)
location: region:332879-333229:1
so has part: feature:332879-332937:1:exon
so has part: feature:333001-333229:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:332879-332937:1:exon

position:332937:1
position: 332937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:333001-333229:1:exon

position:333001:1
position: 333001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition