Corvus hawaiiensis isolate bCorHaw1 chromosome 34, bCorHaw1.pri.cur, whole genome shotgun sequence.
type: Entry
definition: Corvus hawaiiensis isolate bCorHaw1 chromosome 34, bCorHaw1.pri.cur, whole genome shotgun sequence.
sequence version: NC_063246.1
sequence date: 2022-05-19
sequence: sequence
division: CON
label: NC_063246.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA838000
dblink: SAMN22550278
keyword: WGS
keyword: RefSeq
source: Corvus hawaiiensis (hawaiian crow)
organism: Corvus hawaiiensis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM036379.1.\nAssembly name: bCorHaw1.pri.cur\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/11/04. The original whole-genome shotgun project has the\naccession JAJGSY000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 20-SEP-2021\nAssembly Method :: HiFiasm v. 0.15.4+galaxy; purge_dups v.\n 1.2.5+galaxy3; Bionano Solve v.\n 3.6.1+galaxy2; Salsa v. 2.3+galaxy0;\n gEVAL manual curation v. 2021-09-20; VGP\n pipeline v. 2.0\nAssembly Name :: bCorHaw1.pri.cur\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 29.61x\nSequencing Technology :: PacBio Sequel II HiFi; Illumina NovaSeq;\n Bionano Genomics Saphyr DLS; Arima\n Genomics Hi-C v2\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Corvus hawaiiensis Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 104925
topology: linear
so has quality: SO_0000987
location: 1..104925
location: region:1-104925:1
RO_0002162: 134902

NC_063246
type: RefSeq
SIO_000068: refseq

PRJNA838000
type: BioProject
SIO_000068: bioproject

SAMN22550278
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104925:1
position: 104925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-104925:1:source
so part of: sequence
organism: Corvus hawaiiensis
mol type: genomic DNA
isolate: bCorHaw1
chromosome: 34
sex: female
tissue type: blood
dev stage: adult
country: USA: University of Hawaii at Manoa
lat lon: 21.297467 N 157.818261 W
collection date: 2020-08-08
collected by: Bryce Masuda

134902
type: Taxonomy
SIO_000068: taxonomy

LOC125318989
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125318989
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5289..14504)
location: region:5289-14504:-1
so has part: feature:5289-14504:-1:exon
subclass of: SO_0000010

125318989
type: Gene
SIO_000068: ncbigene

position:5289:-1
position: 5289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14504:-1
position: 14504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5289-14504:-1:exon

LOC125318989
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125318989
product: RAS guanyl-releasing protein 2-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048289954.1
SIO_010081: LOC125318989
subclass of: SO_0000673
so part of: LOC125318989
location: complement(join(5289..5480,5635..5693,5799..5972,6205..6241,6467..6605,6870..6986,7270..7387,7703..7835,8183..8469,8907..9027,10415..10588,12247..12367,12519..12584,13000..13102,13441..13528,14470..14504))
location: region:5289-14504:-1
so has part: feature:14470-14504:-1:exon
so has part: feature:13441-13528:-1:exon
so has part: feature:13000-13102:-1:exon
so has part: feature:12519-12584:-1:exon
so has part: feature:12247-12367:-1:exon
so has part: feature:10415-10588:-1:exon
so has part: feature:8907-9027:-1:exon
so has part: feature:8183-8469:-1:exon
so has part: feature:7703-7835:-1:exon
so has part: feature:7270-7387:-1:exon
so has part: feature:6870-6986:-1:exon
so has part: feature:6467-6605:-1:exon
so has part: feature:6205-6241:-1:exon
so has part: feature:5799-5972:-1:exon
so has part: feature:5635-5693:-1:exon
so has part: feature:5289-5480:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14470-14504:-1:exon

position:14470:-1
position: 14470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13441-13528:-1:exon

position:13441:-1
position: 13441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13528:-1
position: 13528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:13000-13102:-1:exon

position:13000:-1
position: 13000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13102:-1
position: 13102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:12519-12584:-1:exon

position:12519:-1
position: 12519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12584:-1
position: 12584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:12247-12367:-1:exon

position:12247:-1
position: 12247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12367:-1
position: 12367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:10415-10588:-1:exon

position:10415:-1
position: 10415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10588:-1
position: 10588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8907-9027:-1:exon

position:8907:-1
position: 8907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9027:-1
position: 9027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:8183-8469:-1:exon

position:8183:-1
position: 8183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8469:-1
position: 8469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:7703-7835:-1:exon

position:7703:-1
position: 7703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7835:-1
position: 7835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:7270-7387:-1:exon

position:7270:-1
position: 7270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7387:-1
position: 7387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6870-6986:-1:exon

position:6870:-1
position: 6870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6986:-1
position: 6986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6467-6605:-1:exon

position:6467:-1
position: 6467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6605:-1
position: 6605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6205-6241:-1:exon

position:6205:-1
position: 6205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6241:-1
position: 6241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5799-5972:-1:exon

position:5799:-1
position: 5799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5972:-1
position: 5972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5635-5693:-1:exon

position:5635:-1
position: 5635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5693:-1
position: 5693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:5289-5480:-1:exon

position:5480:-1
position: 5480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125318989
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125318989
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RAS guanyl-releasing protein 2-like
translation: MSSSLDLDQAPTLDELLRGCVDAFDAQGKVRDPQLVRLFLATHPWYLPQAEVAGKLLTLVQESGGSAEGPSLRLKIGHLVRYWVRAFPQELSGDPQVLGRLRELGAALGGGPRDPPRPREPLCDIRAFARSAGTSSSPALRRLVALSNGLSRWVQLRVLRPLAAPQRAAALGQCLHLAQSLLELRNFNSLLAVVGGARPRLPSRACAGPLALLTPPPHPAVGTAGRGPWARGGTTGATGAAGGRGERRGVPGAGARCPPAGPGGRWRQALPDWGGPGRPHPNKLRARFALQGALLAGREQGPPGTPHPDLLRLLEVSLALGPSEEQLHQMSLQREAPRERPREAGGSGGGTGGECGKGGGGGAPPGAAPPPSPPSAGCCPSPPGPTPRGCDPASSSSWSPFSGTSTWTGDGRISVEEFGIVRENFPPPAPLGELDTDMDGGLSRGEVLDYFPALQPRTPPRDPPHNFRGLRGLRAGPCETCGKLIWGLHKDGLECSGCGLRCHIACRERLRPECRRRAQSVAAAPPDPPGSPKARPRSFSLSLPWPRRPSLRPTEPPEEVQELEDGVFDTHL
SIO_010081: LOC125318989
subclass of: SO_0000673
so part of: LOC125318989
location: complement(join(5638..5693,5799..5972,6205..6241,6467..6605,6870..6986,7270..7387,7703..7835,8183..8469,8907..9027,10415..10588,12247..12367,12519..12584,13000..13102,13441..13513))
location: region:5638-13513:-1
so has part: feature:13441-13513:-1:exon
so has part: feature:13000-13102:-1:exon
so has part: feature:12519-12584:-1:exon
so has part: feature:12247-12367:-1:exon
so has part: feature:10415-10588:-1:exon
so has part: feature:8907-9027:-1:exon
so has part: feature:8183-8469:-1:exon
so has part: feature:7703-7835:-1:exon
so has part: feature:7270-7387:-1:exon
so has part: feature:6870-6986:-1:exon
so has part: feature:6467-6605:-1:exon
so has part: feature:6205-6241:-1:exon
so has part: feature:5799-5972:-1:exon
so has part: feature:5638-5693:-1:exon

XP_048145911.1
type: Protein
SIO_000068: ncbiprotein

position:5638:-1
position: 5638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13513:-1
position: 13513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13441-13513:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13000-13102:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12519-12584:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:12247-12367:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10415-10588:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8907-9027:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8183-8469:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7703-7835:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7270-7387:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6870-6986:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6467-6605:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6205-6241:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5799-5972:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5638-5693:-1:exon

PYGM
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: PYGM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(14878..26075)
location: region:14878-26075:-1
so has part: feature:14878-26075:-1:exon
subclass of: SO_0000010

125318996
type: Gene
SIO_000068: ncbigene

position:14878:-1
position: 14878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26075:-1
position: 26075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14878-26075:-1:exon

PYGM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: PYGM
product: glycogen phosphorylase, muscle associated
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
transcript id: XM_048289960.1
SIO_010081: PYGM
subclass of: SO_0000673
so part of: PYGM
location: complement(join(14878..15628,16240..16306,16523..16657,17316..17524,18061..18202,18449..18507,18910..19057,19307..19408,19568..19682,19932..20095,21027..21173,21376..21468,21552..21695,22172..22254,22660..22771,23232..23363,23610..23713,24201..24279,24544..24645,25680..26075))
location: region:14878-26075:-1
so has part: feature:25680-26075:-1:exon
so has part: feature:24544-24645:-1:exon
so has part: feature:24201-24279:-1:exon
so has part: feature:23610-23713:-1:exon
so has part: feature:23232-23363:-1:exon
so has part: feature:22660-22771:-1:exon
so has part: feature:22172-22254:-1:exon
so has part: feature:21552-21695:-1:exon
so has part: feature:21376-21468:-1:exon
so has part: feature:21027-21173:-1:exon
so has part: feature:19932-20095:-1:exon
so has part: feature:19568-19682:-1:exon
so has part: feature:19307-19408:-1:exon
so has part: feature:18910-19057:-1:exon
so has part: feature:18449-18507:-1:exon
so has part: feature:18061-18202:-1:exon
so has part: feature:17316-17524:-1:exon
so has part: feature:16523-16657:-1:exon
so has part: feature:16240-16306:-1:exon
so has part: feature:14878-15628:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25680-26075:-1:exon

position:25680:-1
position: 25680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:24544-24645:-1:exon

position:24544:-1
position: 24544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24645:-1
position: 24645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:24201-24279:-1:exon

position:24201:-1
position: 24201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24279:-1
position: 24279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:23610-23713:-1:exon

position:23610:-1
position: 23610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23713:-1
position: 23713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:23232-23363:-1:exon

position:23232:-1
position: 23232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23363:-1
position: 23363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:22660-22771:-1:exon

position:22660:-1
position: 22660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22771:-1
position: 22771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:22172-22254:-1:exon

position:22172:-1
position: 22172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22254:-1
position: 22254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:21552-21695:-1:exon

position:21552:-1
position: 21552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21695:-1
position: 21695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:21376-21468:-1:exon

position:21376:-1
position: 21376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21468:-1
position: 21468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:21027-21173:-1:exon

position:21027:-1
position: 21027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21173:-1
position: 21173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:19932-20095:-1:exon

position:19932:-1
position: 19932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20095:-1
position: 20095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:19568-19682:-1:exon

position:19568:-1
position: 19568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19682:-1
position: 19682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:19307-19408:-1:exon

position:19307:-1
position: 19307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19408:-1
position: 19408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:18910-19057:-1:exon

position:18910:-1
position: 18910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19057:-1
position: 19057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:18449-18507:-1:exon

position:18449:-1
position: 18449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18507:-1
position: 18507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:18061-18202:-1:exon

position:18061:-1
position: 18061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18202:-1
position: 18202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:17316-17524:-1:exon

position:17316:-1
position: 17316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17524:-1
position: 17524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:16523-16657:-1:exon

position:16523:-1
position: 16523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16657:-1
position: 16657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:16240-16306:-1:exon

position:16240:-1
position: 16240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16306:-1
position: 16306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:14878-15628:-1:exon

position:15628:-1
position: 15628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PYGM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: PYGM
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: glycogen phosphorylase, muscle form
translation: MSRPLSDEDRRRQISVRGLAGAENVGELKRNFNRHLHFTLVKDRNVATSRDYYFALAHTVRDHLVGRWLRTQQYYYEKDPKRIYYLSLEFYMGRTLTNTMVNLGLQSGCDEALYQLGLDMEELQEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQRIAGGWQVEEADDWLRYGNPWEKARPEYTIPVHFYGRVEHGPGGARWLDTQVVLAVPYDTPVPGYRNNTVNTLRLWSARAPNDFNLKDFNVGGYVQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLHDIIRRFKSAKFGCRDPVRTSFGSFPDKVAIQLNDTHPSLAIPELMRILVDEERMGWDEAWDITVRTCAYTNHTVLPEALERWPVPLLESLLPRHLQLIYEINQRFLDRVYASFPGDHERLRRMSLVEEGAVKRINMAHLCIVGAHAVNGVAAIHSQILKDSVFKDFYDLEPHKFQNKTNGITPRRWLVMCNPGLAEVIAQRIGEDFVSDLDQLRRLQDFVDDESFIRDVAKVKQENKLKFAAYLEKVSGVRVNPASLFDVQVKRIHEYKRQLLNCLHIITLYNRIKKDPGKPFVPRTIMIGGKAAPGYHMAKMIIRLVTAIGDVVNQDPAVGDRLRVLFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRVPDVEALDRKGYRAQEYYDRLPELRQAVDQLSSGFFSPRQPDLFRDIVNMLMNHDRFKVFADYEAYVKCQEKVSALYKNPREWTRTVIRNVAAAGKFSSDRTIAQYAREIWGCEPSRQRIPAPDDPRE
SIO_010081: PYGM
subclass of: SO_0000673
so part of: PYGM
location: complement(join(15476..15628,16240..16306,16523..16657,17316..17524,18061..18202,18449..18507,18910..19057,19307..19408,19568..19682,19932..20095,21027..21173,21376..21468,21552..21695,22172..22254,22660..22771,23232..23363,23610..23713,24201..24279,24544..24645,25680..25922))
location: region:15476-25922:-1
so has part: feature:25680-25922:-1:exon
so has part: feature:24544-24645:-1:exon
so has part: feature:24201-24279:-1:exon
so has part: feature:23610-23713:-1:exon
so has part: feature:23232-23363:-1:exon
so has part: feature:22660-22771:-1:exon
so has part: feature:22172-22254:-1:exon
so has part: feature:21552-21695:-1:exon
so has part: feature:21376-21468:-1:exon
so has part: feature:21027-21173:-1:exon
so has part: feature:19932-20095:-1:exon
so has part: feature:19568-19682:-1:exon
so has part: feature:19307-19408:-1:exon
so has part: feature:18910-19057:-1:exon
so has part: feature:18449-18507:-1:exon
so has part: feature:18061-18202:-1:exon
so has part: feature:17316-17524:-1:exon
so has part: feature:16523-16657:-1:exon
so has part: feature:16240-16306:-1:exon
so has part: feature:15476-15628:-1:exon

XP_048145917.1
type: Protein
SIO_000068: ncbiprotein

position:15476:-1
position: 15476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25922:-1
position: 25922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25680-25922:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:24544-24645:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:24201-24279:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:23610-23713:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:23232-23363:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:22660-22771:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:22172-22254:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:21552-21695:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:21376-21468:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:21027-21173:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:19932-20095:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:19568-19682:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:19307-19408:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:18910-19057:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:18449-18507:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:18061-18202:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:17316-17524:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:16523-16657:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:16240-16306:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:15476-15628:-1:exon

LOC125318990
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125318990
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(26875..36511)
location: region:26875-36511:-1
so has part: feature:26875-36511:-1:exon
subclass of: SO_0000010

125318990
type: Gene
SIO_000068: ncbigene

position:26875:-1
position: 26875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36511:-1
position: 36511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26875-36511:-1:exon

LOC125318990
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125318990
product: splicing factor 1-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 2 codons; deleted 3 bases in 2 codons
transcript id: XM_048289955.1
SIO_010081: LOC125318990
subclass of: SO_0000673
so part of: LOC125318990
location: complement(join(26875..27984,28513..28663,28974..29033,29509..29754,29873..29961,30168..30342,30820..30927,31010..31125,31211..31394,31840..31929,32026..32178,34113..34188,35630..35755,36403..36511))
location: region:26875-36511:-1
so has part: feature:36403-36511:-1:exon
so has part: feature:35630-35755:-1:exon
so has part: feature:34113-34188:-1:exon
so has part: feature:32026-32178:-1:exon
so has part: feature:31840-31929:-1:exon
so has part: feature:31211-31394:-1:exon
so has part: feature:31010-31125:-1:exon
so has part: feature:30820-30927:-1:exon
so has part: feature:30168-30342:-1:exon
so has part: feature:29873-29961:-1:exon
so has part: feature:29509-29754:-1:exon
so has part: feature:28974-29033:-1:exon
so has part: feature:28513-28663:-1:exon
so has part: feature:26875-27984:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:36403-36511:-1:exon

position:36403:-1
position: 36403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:35630-35755:-1:exon

position:35630:-1
position: 35630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35755:-1
position: 35755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:34113-34188:-1:exon

position:34113:-1
position: 34113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34188:-1
position: 34188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:32026-32178:-1:exon

position:32026:-1
position: 32026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32178:-1
position: 32178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:31840-31929:-1:exon

position:31840:-1
position: 31840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31929:-1
position: 31929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:31211-31394:-1:exon

position:31211:-1
position: 31211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31394:-1
position: 31394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:31010-31125:-1:exon

position:31010:-1
position: 31010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31125:-1
position: 31125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:30820-30927:-1:exon

position:30820:-1
position: 30820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30927:-1
position: 30927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:30168-30342:-1:exon

position:30168:-1
position: 30168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30342:-1
position: 30342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:29873-29961:-1:exon

position:29873:-1
position: 29873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29961:-1
position: 29961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:29509-29754:-1:exon

position:29509:-1
position: 29509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29754:-1
position: 29754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:28974-29033:-1:exon

position:28974:-1
position: 28974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29033:-1
position: 29033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:28513-28663:-1:exon

position:28513:-1
position: 28513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28663:-1
position: 28663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:26875-27984:-1:exon

position:27984:-1
position: 27984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125318990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125318990
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 2 codons; deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: splicing factor 1-like
translation: MPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNRILRPWQSTETRSITNTTVCTKCGGAGHIASDCKFARPGDPQSAQDKARMDKEYLSLMAELGEAPVSVSSNAAHNNSPLSSSHRAASQAGGQPPPIGISQNDLQPPLNPQSPLTPPFSYSAAPPGAAPPWMSSAPSENRPYHGLHGGPGGPGGPHSFPHPMAGMGGGHGGHPLQHTPNGPPPWMQPHHPPMGGGPHPPGHPGPHHMDQYLGNAPVGSGVYRLHQGKGMMPPPLGMLPPPPPPPGGQPXPPPSGPLPPWQQQPPPPPSSSSTPLPWQQNTTTTTSAGSASLPPWQQQAGGGAAGGGAASSGAPPLPGSPSMVPLPPGVQPPLPPGAPPXPPPPPPGSGGLMYAPPPPPPPPPMDPSNFVTMMGMGVPALPPFGMPPAPPPAAPPELSLGHCRCGDPPPKRNNPSGVSPPPPPQKHHGVPPPPSRTDPSWGDPLPKTQRGAPLKD
SIO_010081: LOC125318990
subclass of: SO_0000673
so part of: LOC125318990
location: complement(join(27455..27984,28513..28663,28974..29033,29509..29754,29873..29961,30168..30342,30820..30927,31010..31125,31211..31394,31840..31929,32026..32178,34113..34188,35630..35684))
location: region:27455-35684:-1
so has part: feature:35630-35684:-1:exon
so has part: feature:34113-34188:-1:exon
so has part: feature:32026-32178:-1:exon
so has part: feature:31840-31929:-1:exon
so has part: feature:31211-31394:-1:exon
so has part: feature:31010-31125:-1:exon
so has part: feature:30820-30927:-1:exon
so has part: feature:30168-30342:-1:exon
so has part: feature:29873-29961:-1:exon
so has part: feature:29509-29754:-1:exon
so has part: feature:28974-29033:-1:exon
so has part: feature:28513-28663:-1:exon
so has part: feature:27455-27984:-1:exon

XP_048145912.1
type: Protein
SIO_000068: ncbiprotein

position:27455:-1
position: 27455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35684:-1
position: 35684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35630-35684:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:34113-34188:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:32026-32178:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:31840-31929:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:31211-31394:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:31010-31125:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:30820-30927:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:30168-30342:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:29873-29961:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:29509-29754:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:28974-29033:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:28513-28663:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:27455-27984:-1:exon

MEN1
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: MEN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(37513..43255)
location: region:37513-43255:-1
so has part: feature:37513-43255:-1:exon
subclass of: SO_0000010

125318995
type: Gene
SIO_000068: ncbigene

position:37513:-1
position: 37513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43255:-1
position: 43255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37513-43255:-1:exon

MEN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: MEN1
product: menin 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 4 bases in 4 codons
transcript id: XM_048289959.1
SIO_010081: MEN1
subclass of: SO_0000673
so part of: MEN1
location: complement(join(37513..38969,39611..39775,40131..40245,40653..40789,40877..40964,41062..41102,41199..41327,41569..41776,42020..42471,43206..43255))
location: region:37513-43255:-1
so has part: feature:43206-43255:-1:exon
so has part: feature:42020-42471:-1:exon
so has part: feature:41569-41776:-1:exon
so has part: feature:41199-41327:-1:exon
so has part: feature:41062-41102:-1:exon
so has part: feature:40877-40964:-1:exon
so has part: feature:40653-40789:-1:exon
so has part: feature:40131-40245:-1:exon
so has part: feature:39611-39775:-1:exon
so has part: feature:37513-38969:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:43206-43255:-1:exon

position:43206:-1
position: 43206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:42020-42471:-1:exon

position:42020:-1
position: 42020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42471:-1
position: 42471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:41569-41776:-1:exon

position:41569:-1
position: 41569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41776:-1
position: 41776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:41199-41327:-1:exon

position:41199:-1
position: 41199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41327:-1
position: 41327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:41062-41102:-1:exon

position:41062:-1
position: 41062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41102:-1
position: 41102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:40877-40964:-1:exon

position:40877:-1
position: 40877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40964:-1
position: 40964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:40653-40789:-1:exon

position:40653:-1
position: 40653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40789:-1
position: 40789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:40131-40245:-1:exon

position:40131:-1
position: 40131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40245:-1
position: 40245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:39611-39775:-1:exon

position:39611:-1
position: 39611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39775:-1
position: 39775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:37513-38969:-1:exon

position:38969:-1
position: 38969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MEN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: MEN1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 4 bases in 4 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(38786..38788),aa:OTHER)
product: LOW QUALITY PROTEIN: menin
translation: MGLKPWQKALFPLRSVAAVVRLFEAELRQPEPDLVLLSLVLGFVEHFLAVNRVLPTNVPGLTFESRPXPDPQTRLYFPVAELSIVAALYARFTAQIRGAVDLSLYPRPDGCSSRDLVRKVSDVIWNSLSRSYFKDRAHIQSLFSFITGTKLDSSGXAFAVVGACQVLGLPDVHLALSEDHAWVAFGAGGSQTAEVTWHGKGNEDRRGQPVQAGVAERSWLYLKGSYLRCTRHMEVAFMVCAINPSIDGHTDSLELLQLQQRLLWLLYDMGHLDRYPMALGNLADLEELEPTPGRPDPLTLYHQGIHSARTYYNNEHIYPYLYLAGFHCRNKNVKEALEAWADTATVIQDYNYCREDEEIYKEFFDVANDVIPNLLKEAAAEPPPGAEGAPGGLPALQDPECFAHLLRFYDGICRWEEGSPTPVLHVGWATFLVQSLGRFDGQVRQQVTLLSRTLPPPEADLGGPEDPRDGRRRGPRRESKPEEPPTPKKSGERRPPPPCPPPXGDPAAPSHGTPGPGDPRAGPARAPPGAVLRFRSQKMRGMKELLRAAKVNSSAIKLQLTAQSQVQPRRPRAXPPAPYPLPFLKRPRKGS
SIO_010081: MEN1
subclass of: SO_0000673
so part of: MEN1
location: complement(join(38520..38969,39611..39775,40131..40245,40653..40789,40877..40964,41062..41102,41199..41327,41569..41776,42020..42463))
location: region:38520-42463:-1
so has part: feature:42020-42463:-1:exon
so has part: feature:41569-41776:-1:exon
so has part: feature:41199-41327:-1:exon
so has part: feature:41062-41102:-1:exon
so has part: feature:40877-40964:-1:exon
so has part: feature:40653-40789:-1:exon
so has part: feature:40131-40245:-1:exon
so has part: feature:39611-39775:-1:exon
so has part: feature:38520-38969:-1:exon

XP_048145916.1
type: Protein
SIO_000068: ncbiprotein

position:38520:-1
position: 38520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42463:-1
position: 42463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42020-42463:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:41569-41776:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:41199-41327:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:41062-41102:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:40877-40964:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:40653-40789:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:40131-40245:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:39611-39775:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:38520-38969:-1:exon

LOC125318993
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125318993
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(44224..45429)
location: region:44224-45429:-1
so has part: feature:44224-45429:-1:exon
subclass of: SO_0000011

125318993
type: Gene
SIO_000068: ncbigene

position:44224:-1
position: 44224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45429:-1
position: 45429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44224-45429:-1:exon

LOC125318993
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 134902
nc RNA class: lncRNA
gene: LOC125318993
product: uncharacterized LOC125318993
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007200559.1
SIO_010081: LOC125318993
subclass of: SO_0000673
so part of: LOC125318993
location: complement(join(44224..44497,44897..45035,45317..45429))
location: region:44224-45429:-1
so has part: feature:45317-45429:-1:exon
so has part: feature:44897-45035:-1:exon
so has part: feature:44224-44497:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:45317-45429:-1:exon

position:45317:-1
position: 45317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:44897-45035:-1:exon

position:44897:-1
position: 44897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45035:-1
position: 45035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:44224-44497:-1:exon

position:44497:-1
position: 44497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZNRD2
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: ZNRD2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(49808..52037)
location: region:49808-52037:-1
so has part: feature:49808-52037:-1:exon
subclass of: SO_0000010

125318992
type: Gene
SIO_000068: ncbigene

position:49808:-1
position: 49808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52037:-1
position: 52037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49808-52037:-1:exon

ZNRD2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: ZNRD2
product: zinc ribbon domain containing 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_048289956.1
SIO_010081: ZNRD2
subclass of: SO_0000673
so part of: ZNRD2
location: complement(join(49808..50116,50842..50920,51244..51356,51659..52037))
location: region:49808-52037:-1
so has part: feature:51659-52037:-1:exon
so has part: feature:51244-51356:-1:exon
so has part: feature:50842-50920:-1:exon
so has part: feature:49808-50116:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:51659-52037:-1:exon

position:51659:-1
position: 51659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:51244-51356:-1:exon

position:51244:-1
position: 51244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51356:-1
position: 51356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:50842-50920:-1:exon

position:50842:-1
position: 50842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50920:-1
position: 50920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:49808-50116:-1:exon

position:50116:-1
position: 50116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZNRD2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: ZNRD2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: protein ZNRD2
translation: MALNGGADEAEARRERQDRASRAMGGLLLRGYRMLGSACPRCGTILLQDKEQRLLCVTCQDPEGPGGGHAAGPSPRPPARALRGGGRGFSGRCPRTPRTPRTPRIPRGGRGGGGAAALLQKLLWAAQELPRTASLEASAQLCGLVRACADALGGLQALDPPPGTAQPPPKP
SIO_010081: ZNRD2
subclass of: SO_0000673
so part of: ZNRD2
location: complement(join(49808..50116,50842..50920,51244..51356,51659..51674))
location: region:49808-51674:-1
so has part: feature:51659-51674:-1:exon
so has part: feature:51244-51356:-1:exon
so has part: feature:50842-50920:-1:exon
so has part: feature:49808-50116:-1:exon

XP_048145913.1
type: Protein
SIO_000068: ncbiprotein

position:51674:-1
position: 51674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51659-51674:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:51244-51356:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:50842-50920:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:49808-50116:-1:exon

LOC125318986
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125318986
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(52394..57231)
location: region:52394-57231:-1
so has part: feature:52394-57231:-1:exon
subclass of: SO_0000010

125318986
type: Gene
SIO_000068: ncbigene

position:52394:-1
position: 52394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57231:-1
position: 57231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52394-57231:-1:exon

LOC125318986
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125318986
product: RNA-binding protein 4B-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XM_048289951.1
SIO_010081: LOC125318986
subclass of: SO_0000673
so part of: LOC125318986
location: complement(join(52394..52462,52548..53245,54589..55010,56579..57231))
location: region:52394-57231:-1
so has part: feature:56579-57231:-1:exon
so has part: feature:54589-55010:-1:exon
so has part: feature:52548-53245:-1:exon
so has part: feature:52394-52462:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:56579-57231:-1:exon

position:56579:-1
position: 56579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:54589-55010:-1:exon

position:54589:-1
position: 54589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55010:-1
position: 55010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:52548-53245:-1:exon

position:52548:-1
position: 52548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53245:-1
position: 53245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:52394-52462:-1:exon

position:52462:-1
position: 52462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125318986
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125318986
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: RNA-binding protein 4B-like
translation: MSRARAEFSRTAALGHDPGNLATTLVMAPWRSHTTCMLMEWKLAALRNMGSLSAGARSATCMAPTKPSTPGSAGGSPGGAGGGGKAMYRGARRCSAARNCARQLDMADWLMPVLRRDAVWKEPEARKAKAEVTLTATGSAWLRPVRLCRSAPSSRHRAAMAARSRRQRRSACSSLSSRKEQRTRRVAMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHGVCINVEASKNKSKASTKLHVGNISPACTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGMGDKSGCYRCGKEGHWSKECPVDRPGQVADFAEAYNEQYGAVRTPYTAGYGETVYYDEAYGGMADYYKRYRVRSYATASAYDAYAEQTMAQYSQYAQYSQVQSSAMAATTAMAGRIPTTLDAYDRALLPTPGAAAAVAAAAATAAAAAASSTYYTRDRSPLRRTAAAASTVGEAYTYERGQLSPVSSVARASLYDMQRFERDPYGERARYSAF
SIO_010081: LOC125318986
subclass of: SO_0000673
so part of: LOC125318986
location: complement(join(52549..53245,54589..55010,56579..57129))
location: region:52549-57129:-1
so has part: feature:56579-57129:-1:exon
so has part: feature:54589-55010:-1:exon
so has part: feature:52549-53245:-1:exon

XP_048145908.1
type: Protein
SIO_000068: ncbiprotein

position:52549:-1
position: 52549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57129:-1
position: 57129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56579-57129:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:54589-55010:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52549-53245:-1:exon

CCS
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: CCS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 59143..61739
location: region:59143-61739:1
so has part: feature:59143-61739:1:exon
subclass of: SO_0000010

125318988
type: Gene
SIO_000068: ncbigene

position:59143:1
position: 59143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61739:1
position: 61739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59143-61739:1:exon

CCS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: CCS
product: copper chaperone for superoxide dismutase
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
transcript id: XM_048289953.1
SIO_010081: CCS
subclass of: SO_0000673
so part of: CCS
location: join(59143..59219,59843..59918,60004..60153,60424..60601,60701..60761,61041..61118,61368..61471,61555..61739)
location: region:59143-61739:1
so has part: feature:59143-59219:1:exon
so has part: feature:59843-59918:1:exon
so has part: feature:60004-60153:1:exon
so has part: feature:60424-60601:1:exon
so has part: feature:60701-60761:1:exon
so has part: feature:61041-61118:1:exon
so has part: feature:61368-61471:1:exon
so has part: feature:61555-61739:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59143-59219:1:exon

position:59219:1
position: 59219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:59843-59918:1:exon

position:59843:1
position: 59843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59918:1
position: 59918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:60004-60153:1:exon

position:60004:1
position: 60004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60153:1
position: 60153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:60424-60601:1:exon

position:60424:1
position: 60424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60601:1
position: 60601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:60701-60761:1:exon

position:60701:1
position: 60701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60761:1
position: 60761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:61041-61118:1:exon

position:61041:1
position: 61041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61118:1
position: 61118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:61368-61471:1:exon

position:61368:1
position: 61368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61471:1
position: 61471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:61555-61739:1:exon

position:61555:1
position: 61555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CCS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: CCS
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: copper chaperone for superoxide dismutase
translation: MASPAAAGSSCRLEFAVADELPGPVPMPVRAALDAAPDVKLLELRPQEQSVLVETTVAAERVRELLENSGCRAVLKGMGGSPEGERGSPGGAAVAALGGPGGVRGLVRFLQLSPGRCLVDGAVSGLPPGPHGLHIHEFGDLSDPCNSCGGHFDPDGETHGGPQDQHRHAGDLGNIWADAEGRARFRIEDTRLKVWDIIGRSVVVAEGEDDLGRGSHPLSRVTGNSGPGLACGVVARAAGLFXNPKRVCSCDGVTLWEERDRSHGTPPGTPSPHL
SIO_010081: CCS
subclass of: SO_0000673
so part of: CCS
location: join(59184..59219,59843..59918,60004..60153,60424..60601,60701..60761,61041..61118,61368..61471,61555..61695)
location: region:59184-61695:1
so has part: feature:59184-59219:1:exon
so has part: feature:59843-59918:1:exon
so has part: feature:60004-60153:1:exon
so has part: feature:60424-60601:1:exon
so has part: feature:60701-60761:1:exon
so has part: feature:61041-61118:1:exon
so has part: feature:61368-61471:1:exon
so has part: feature:61555-61695:1:exon

XP_048145910.1
type: Protein
SIO_000068: ncbiprotein

position:59184:1
position: 59184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61695:1
position: 61695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59184-59219:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:59843-59918:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:60004-60153:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:60424-60601:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:60701-60761:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:61041-61118:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:61368-61471:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:61555-61695:1:exon

RBM14
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: RBM14
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 62289..67440
location: region:62289-67440:1
so has part: feature:62289-67440:1:exon
subclass of: SO_0000010

125318985
type: Gene
SIO_000068: ncbigene

position:62289:1
position: 62289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67440:1
position: 67440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62289-67440:1:exon

RBM14
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: RBM14
product: RNA binding motif protein 14
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons
transcript id: XM_048289950.1
SIO_010081: RBM14
subclass of: SO_0000673
so part of: RBM14
location: join(62289..62754,64922..66553,66919..67440)
location: region:62289-67440:1
so has part: feature:62289-62754:1:exon
so has part: feature:64922-66553:1:exon
so has part: feature:66919-67440:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:62289-62754:1:exon

position:62754:1
position: 62754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:64922-66553:1:exon

position:64922:1
position: 64922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66553:1
position: 66553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:66919-67440:1:exon

position:66919:1
position: 66919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RBM14
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: RBM14
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: RNA-binding protein 14
translation: MRPGIKLFVGNVPEEASAEELSELFAGVAGPVLGVALMKQFAFVHLRDEAAAARAISQLNGHQLHGRRIVVEPSRPRPTNTCKIFVGNVSAACTSGELRSLFQQYGPVVECDVVKDYAFVHMENEADAKVAIENLNGKEVKGRRVNVELSTNVQKKGTGQAPPPALGVDKTKRIGLEYREKFQPKIEGFDQQRRAPDAAIPPATGAGYAAIPSLYDYQQRFGAKYDTFEAQPRPASPSYFSRDRSPLRRSPTRAGYAAVTLPMTAQPAAYRAQPSASLGAAYRAQPLASLGVAYRAQPTTGQAAAYRAQPSASLGSSYRSQPSVGSLGATGAQPAAANSLGSYGAQPPAAAASYGAQPAAANSLSSYGVQSAALASSYGAQPSSGYSAGYSAPPAIAAYGAQPTAGSAGSYSTQAVAVHVASYGAQLATGSYGAQPVDGHAGSYGAQPGAALSAGYSAQAVAVHASSYSAQAVAGHAAAAYQPVAGHSASYGAQPALSASYGAQPTVGHSASYGAQPASGLPASYGSQPAAAALPAGYGAQTGSSLAASYGSQAAVAAASYKAQASAPLTATYRAQASGAMAASYPPQQPSSSALAAAYRAQPGSAYDGPSQLGQPAGSYLGLAQAAAAAPPYERTRLSPPRSTAYDDPYKKSSSLAKRYGSERRLSELADYRRLADSPLAYRRSPTKSPLDYRRLPDAHTEYTRYSGGYGDYLPAARVHSGYQRRL
SIO_010081: RBM14
subclass of: SO_0000673
so part of: RBM14
location: join(62409..62754,64922..66553,66919..67127)
location: region:62409-67127:1
so has part: feature:62409-62754:1:exon
so has part: feature:64922-66553:1:exon
so has part: feature:66919-67127:1:exon

XP_048145907.1
type: Protein
SIO_000068: ncbiprotein

position:62409:1
position: 62409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67127:1
position: 67127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62409-62754:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:64922-66553:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:66919-67127:1:exon

LOC125318987
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125318987
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(68388..72861)
location: region:68388-72861:-1
so has part: feature:68388-72861:-1:exon
subclass of: SO_0000010

125318987
type: Gene
SIO_000068: ncbigene

position:68388:-1
position: 68388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:72861:-1
position: 72861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68388-72861:-1:exon

LOC125318987
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125318987
product: RNA-binding protein 4B-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
transcript id: XM_048289952.1
SIO_010081: LOC125318987
subclass of: SO_0000673
so part of: LOC125318987
location: complement(join(68388..68894,69359..70061,71105..71526,72799..72861))
location: region:68388-72861:-1
so has part: feature:72799-72861:-1:exon
so has part: feature:71105-71526:-1:exon
so has part: feature:69359-70061:-1:exon
so has part: feature:68388-68894:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:72799-72861:-1:exon

position:72799:-1
position: 72799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:71105-71526:-1:exon

position:71105:-1
position: 71105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:71526:-1
position: 71526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:69359-70061:-1:exon

position:69359:-1
position: 69359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:70061:-1
position: 70061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:68388-68894:-1:exon

position:68894:-1
position: 68894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125318987
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125318987
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: RNA-binding protein 4B-like
translation: MSAWEAGRGPGDAAAILRVAMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHHKLHGVCINVEASKNKSKASTKLHVGNISPACTNLELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLSTSRLRTAPGMGDKSGCYRCGKEGHWSKECPVDRPGQVADFAEAYNEQYGAVRTPYTAGYGETVYYDEAYGGMADYYKRYQVRSYATASAYDAYAEQTMAQYSQYAQYSQVQSSAMAATTAMAGRIPTTLDAYDRALLPTPGAAAAVAAAAATAAAAAASSTYYTRDRSPLRRTAAAASTVGEAYTYERGQLSPVSSVARASLYDMQRFGRDPYADRARYSAF
SIO_010081: LOC125318987
subclass of: SO_0000673
so part of: LOC125318987
location: complement(join(69366..70061,71105..71526,72799..72848))
location: region:69366-72848:-1
so has part: feature:72799-72848:-1:exon
so has part: feature:71105-71526:-1:exon
so has part: feature:69366-70061:-1:exon

XP_048145909.1
type: Protein
SIO_000068: ncbiprotein

position:69366:-1
position: 69366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:72848:-1
position: 72848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72799-72848:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:71105-71526:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:69366-70061:-1:exon

LOC125318994
type: Gene
subclass of: SO_0000704
RO_0002162: 134902
gene: LOC125318994
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(73862..99361)
location: region:73862-99361:-1
so has part: feature:73862-99361:-1:exon
subclass of: SO_0000010

125318994
type: Gene
SIO_000068: ncbigene

position:73862:-1
position: 73862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99361:-1
position: 99361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73862-99361:-1:exon

LOC125318994
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 134902
gene: LOC125318994
product: spectrin beta chain, non-erythrocytic 4-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 4 bases in 4 codons
transcript id: XM_048289957.1
SIO_010081: LOC125318994
subclass of: SO_0000673
so part of: LOC125318994
location: complement(join(73862..74229,74349..74391,75148..75321,75722..75870,75971..76046,76266..76423,76661..76857,76984..77068,77227..77366,77917..78162,78417..78792,78969..79173,80089..80219,80591..80860,81162..81251,81542..81766,82674..82938,83474..83620,84138..84228,84313..84515,84608..85364,85860..85997,86580..87762,88040..88193,88287..88589,88856..89014,89690..89807,90020..90207,91482..91594,91816..91931,92945..93025,93259..93350,94082..94255,95604..95753,97873..98114,99287..99361))
location: region:73862-99361:-1
so has part: feature:99287-99361:-1:exon
so has part: feature:97873-98114:-1:exon
so has part: feature:95604-95753:-1:exon
so has part: feature:94082-94255:-1:exon
so has part: feature:93259-93350:-1:exon
so has part: feature:92945-93025:-1:exon
so has part: feature:91816-91931:-1:exon
so has part: feature:91482-91594:-1:exon
so has part: feature:90020-90207:-1:exon
so has part: feature:89690-89807:-1:exon
so has part: feature:88856-89014:-1:exon
so has part: feature:88287-88589:-1:exon
so has part: feature:88040-88193:-1:exon
so has part: feature:86580-87762:-1:exon
so has part: feature:85860-85997:-1:exon
so has part: feature:84608-85364:-1:exon
so has part: feature:84313-84515:-1:exon
so has part: feature:84138-84228:-1:exon
so has part: feature:83474-83620:-1:exon
so has part: feature:82674-82938:-1:exon
so has part: feature:81542-81766:-1:exon
so has part: feature:81162-81251:-1:exon
so has part: feature:80591-80860:-1:exon
so has part: feature:80089-80219:-1:exon
so has part: feature:78969-79173:-1:exon
so has part: feature:78417-78792:-1:exon
so has part: feature:77917-78162:-1:exon
so has part: feature:77227-77366:-1:exon
so has part: feature:76984-77068:-1:exon
so has part: feature:76661-76857:-1:exon
so has part: feature:76266-76423:-1:exon
so has part: feature:75971-76046:-1:exon
so has part: feature:75722-75870:-1:exon
so has part: feature:75148-75321:-1:exon
so has part: feature:74349-74391:-1:exon
so has part: feature:73862-74229:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:99287-99361:-1:exon

position:99287:-1
position: 99287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:97873-98114:-1:exon

position:97873:-1
position: 97873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:98114:-1
position: 98114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:95604-95753:-1:exon

position:95604:-1
position: 95604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:95753:-1
position: 95753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:94082-94255:-1:exon

position:94082:-1
position: 94082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:94255:-1
position: 94255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:93259-93350:-1:exon

position:93259:-1
position: 93259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:93350:-1
position: 93350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:92945-93025:-1:exon

position:92945:-1
position: 92945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:93025:-1
position: 93025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:91816-91931:-1:exon

position:91816:-1
position: 91816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:91931:-1
position: 91931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:91482-91594:-1:exon

position:91482:-1
position: 91482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:91594:-1
position: 91594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:90020-90207:-1:exon

position:90020:-1
position: 90020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:90207:-1
position: 90207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:89690-89807:-1:exon

position:89690:-1
position: 89690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:89807:-1
position: 89807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:88856-89014:-1:exon

position:88856:-1
position: 88856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:89014:-1
position: 89014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:88287-88589:-1:exon

position:88287:-1
position: 88287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:88589:-1
position: 88589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:88040-88193:-1:exon

position:88040:-1
position: 88040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:88193:-1
position: 88193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:86580-87762:-1:exon

position:86580:-1
position: 86580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:87762:-1
position: 87762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:85860-85997:-1:exon

position:85860:-1
position: 85860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:85997:-1
position: 85997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:84608-85364:-1:exon

position:84608:-1
position: 84608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:85364:-1
position: 85364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:84313-84515:-1:exon

position:84313:-1
position: 84313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84515:-1
position: 84515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:84138-84228:-1:exon

position:84138:-1
position: 84138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84228:-1
position: 84228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:83474-83620:-1:exon

position:83474:-1
position: 83474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83620:-1
position: 83620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:82674-82938:-1:exon

position:82674:-1
position: 82674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82938:-1
position: 82938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:81542-81766:-1:exon

position:81542:-1
position: 81542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81766:-1
position: 81766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:81162-81251:-1:exon

position:81162:-1
position: 81162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81251:-1
position: 81251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:80591-80860:-1:exon

position:80591:-1
position: 80591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80860:-1
position: 80860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:80089-80219:-1:exon

position:80089:-1
position: 80089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80219:-1
position: 80219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:78969-79173:-1:exon

position:78969:-1
position: 78969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79173:-1
position: 79173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:78417-78792:-1:exon

position:78417:-1
position: 78417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78792:-1
position: 78792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:77917-78162:-1:exon

position:77917:-1
position: 77917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78162:-1
position: 78162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:77227-77366:-1:exon

position:77227:-1
position: 77227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77366:-1
position: 77366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:76984-77068:-1:exon

position:76984:-1
position: 76984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77068:-1
position: 77068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:76661-76857:-1:exon

position:76661:-1
position: 76661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76857:-1
position: 76857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:76266-76423:-1:exon

position:76266:-1
position: 76266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76423:-1
position: 76423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:75971-76046:-1:exon

position:75971:-1
position: 75971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76046:-1
position: 76046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:75722-75870:-1:exon

position:75722:-1
position: 75722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:75870:-1
position: 75870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:75148-75321:-1:exon

position:75148:-1
position: 75148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:75321:-1
position: 75321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:74349-74391:-1:exon

position:74349:-1
position: 74349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:74391:-1
position: 74391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:73862-74229:-1:exon

position:74229:-1
position: 74229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125318994
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 134902
gene: LOC125318994
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 4 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 4-like
translation: MLSPPPYDPLELPRFSDPRWEGEGGAGGPEEEEEEEEEEEEEDEGSARSFERSRIKALADEREAVQKKTFTKWVNSHLXRGGSHLGDLYSDLRDGRLLLRLLEGLSGETLPRPTRGRMRIHCLENVEKALRFLREQRVHLENVGSHDIVDGNPRLTLGLVWTIILRFQIQDISVETGDTRERKSAKDALLAWCQMKTAGYPNVNVQNFTTSWRDGLAFCALIHRHRPELLDVASLRGANALHNLQSAFAVAERELGVTRLLDPEDVAVEQPDERSVLTYVAALYHHFSRMKALAVEGKRVGKVLEAAREAEGLAGRYEAQAAELLGWIQRSLLLLTDRRLPRGIPGLQGQLQAFSAYRTTEKPPRFEDKGSLEVLLFSLRSRLRANNQRQFVPREGTHSADINRAWERLEKAEHGRELALRSELLRQQHLEQLAARFHRKAALRESWLGDNQRLVAQDNFGGSLGGVEAALRKHEAIESDIAAYGSRVRAVTAVAAELEAERYHDMGGIATRRDHVVSLWEALRAQVAARRERLRAHLELQRLLRDLEHLMGWMEEMEVRLQSRDFGQHLSQVDDLLQIHALVEGDVAAQAERVRSVGAAAERFLGEGGGYRPCPPEQLRARVAALELRYRGLSALSGQRRLRLERSRRLWKFLWDAGEEEAWMREQERLLRCPELGRDLPGALRMLSQLEAIRGALGGRAGPLEQLLERGRELLAQGAPDGAAGSPAGSTGASAGPMEATPGSAGSAKPAESTAGAAAKSPGPPGPPGPKNASSGRAAGPVESLPASTEGPSPSATRAADRPDGSAERPEGCPEPSPGCPDPAAAVSRRIRELESLWAALPALARARERRLRAAAGRFQLDAEAAEAEAWLAAAARRVAGPELGHDERSAGMLERRLRELQDEIRRRGPALAALREQALPADAADLPDVVPGLAERLAELERRHRELEARAELRRLELRDALGLFAARSEADACALWVGEREQWLLSMEIPERIEDLEVVQQRFETLEPELAALAARVASVGRVTQELQGSGDRNRESARETWEQLRDRWERFRALCERKKAALTAALNIQNFRLECHETRGWMREKTAAIEATRALGRDLAGITALQGKLSGMGRDLDAIQGKLRELRAEGEKLQEEQPERAPEIREGLAGLEAEWDALRRCHRSREESLGQARRLQGFLRDLAALQAWLSRTRAAAGSEDVPASLAEAEGSLRQHESLRTEISHYGADYRSARSAGREVTRGQTDPQSLSLLQRLEALDADWEELGRVWEKRQRLLAQAVAFHVFLRDAKQVEGTLGKQEHTLAHTEMPGTVPGAEAAVRRLEEFLAALDTGAERVRALTDTGRKLLDEGGVHAEKVRETVESVESRHQKIRESAQELLGRLRDNWELQKFLQDGQELTLWLNEKLPVARDVSYEGTRDLQGKWQKHQAFAAELAANRGWLEALEKDGEQLALARPALAGQVTAPRQELRALWAQVEAAAAAKGRGLAEAARAESCAQACAGLRSWLAGVRAQLRSSHCGQDLTSVGVLLTRHQLLETQAALREQEVGALRAQAGGLSPGHPRSAGVQEQVRDLEQQFRELREPLRERGRSLAAARELHQFRRDLEDELLWVQERQALAVSTDHGKDLPSVQLLLQKNETLQKELQGRERRVTELLERGVPGSGVPGSGVPGGVPALREAWRELRAQAARRQRSLEAALAAQRFLRDAAAAEAWLGERELHMLAQDKAKDEPGAQAMLSRHLGLEQELRDYGGTVELLAEQGRAMAASGHPDGERLRARAAQVQRLYAGLCHLAGERRATLQGHHRLCQLRRDLDDLEQWISEREVVAASRELGQDFEHVTLLRDKFREFSRDTGGLGQERVDAANAAAAALIAGGHPERAAVAQWQAGLNEAWAELLELVATRAQELAAAHDLQRFRRDARQVLAQLRDKARQVPEELGRDLRAAEGLERQHRAFEHDVQALSAQVTAVQEAAGRLAAAYAGPRAEELGAQEGAVA…
SIO_010081: LOC125318994
subclass of: SO_0000673
so part of: LOC125318994
location: complement(join(74008..74229,74349..74391,75148..75321,75722..75870,75971..76046,76266..76423,76661..76857,76984..77068,77227..77366,77917..78162,78417..78792,78969..79173,80089..80219,80591..80860,81162..81251,81542..81766,82674..82938,83474..83620,84138..84228,84313..84515,84608..85364,85860..85997,86580..87762,88040..88193,88287..88589,88856..89014,89690..89807,90020..90207,91482..91594,91816..91931,92945..93025,93259..93350,94082..94255,95604..95753,97873..98050))
location: region:74008-98050:-1
so has part: feature:97873-98050:-1:exon
so has part: feature:95604-95753:-1:exon
so has part: feature:94082-94255:-1:exon
so has part: feature:93259-93350:-1:exon
so has part: feature:92945-93025:-1:exon
so has part: feature:91816-91931:-1:exon
so has part: feature:91482-91594:-1:exon
so has part: feature:90020-90207:-1:exon
so has part: feature:89690-89807:-1:exon
so has part: feature:88856-89014:-1:exon
so has part: feature:88287-88589:-1:exon
so has part: feature:88040-88193:-1:exon
so has part: feature:86580-87762:-1:exon
so has part: feature:85860-85997:-1:exon
so has part: feature:84608-85364:-1:exon
so has part: feature:84313-84515:-1:exon
so has part: feature:84138-84228:-1:exon
so has part: feature:83474-83620:-1:exon
so has part: feature:82674-82938:-1:exon
so has part: feature:81542-81766:-1:exon
so has part: feature:81162-81251:-1:exon
so has part: feature:80591-80860:-1:exon
so has part: feature:80089-80219:-1:exon
so has part: feature:78969-79173:-1:exon
so has part: feature:78417-78792:-1:exon
so has part: feature:77917-78162:-1:exon
so has part: feature:77227-77366:-1:exon
so has part: feature:76984-77068:-1:exon
so has part: feature:76661-76857:-1:exon
so has part: feature:76266-76423:-1:exon
so has part: feature:75971-76046:-1:exon
so has part: feature:75722-75870:-1:exon
so has part: feature:75148-75321:-1:exon
so has part: feature:74349-74391:-1:exon
so has part: feature:74008-74229:-1:exon

XP_048145914.1
type: Protein
SIO_000068: ncbiprotein

position:74008:-1
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