Vallitalea pronyensis strain FatNI3 plasmid pVpro, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Vallitaleaceae; Vallitalea.
Submitted (01-JUL-2020) Microbiologie Environnementale et Biotechnologie (MEB), Mediterranean Institute of Oceanography (MIO), UMR 7294, 163 avenue de Luminy, Marseille 13288, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP058650.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. JUNE-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/07/2023 04:57:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,297\nCDSs (total) :: 5,219\nGenes (coding) :: 5,193\nCDSs (with protein) :: 5,193\nGenes (RNA) :: 78\nrRNAs :: 6, 6, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 8 of 26\nPseudo Genes (incomplete) :: 19 of 26\nPseudo Genes (internal stop) :: 2 of 26\nPseudo Genes (multiple problems) :: 3 of 26\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012784.2
GO:0003676 - nucleic acid binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
S1 RNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025642.2
COORDINATES: similar to AA sequence:RefSeq:WP_009259434.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF012320.2
COORDINATES: similar to AA sequence:RefSeq:WP_014311767.1
COORDINATES: protein motif:HMM:NF015935.2
COORDINATES: protein motif:HMM:NF039493.1
COORDINATES: protein motif:HMM:NF024078.2
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF013700.2
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012652.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:NF012613.2
S-layer homology domain-containing protein
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: similar to AA sequence:RefSeq:WP_014184855.1
COORDINATES: protein motif:HMM:NF019450.2
COORDINATES: similar to AA sequence:RefSeq:WP_010250235.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024554.2
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]