Paraburkholderia fungorum strain ATCC BAA-463 plasmid pBIL, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia.
Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor
Erratum:[Genome Announc. 2016;4(2). pii: e00313-16. doi: 10.1128/genomeA.00313-16. PMID: 27103731] Publication Status: Online-Only
Submitted (25-NOV-2014) Bioscience, Los Alamos National Laboratory, P.O. Box 1663, MS M888, Los Alamos, NM 87545, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP010024.1.\nThe DNA was obtained from USAMRIID.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 13-NOV-2014\nAssembly Method :: Velvet v. 1.2.08; Phrap v. SPS - 4.24;\n HGAP v. 2.2.0\nGenome Coverage :: 551x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/14/2023 10:38:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,202\nCDSs (total) :: 8,117\nGenes (coding) :: 7,956\nCDSs (with protein) :: 7,956\nGenes (RNA) :: 85\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 4\nPseudo Genes (total) :: 161\nCDSs (without protein) :: 161\nPseudo Genes (ambiguous residues) :: 0 of 161\nPseudo Genes (frameshifted) :: 57 of 161\nPseudo Genes (incomplete) :: 128 of 161\nPseudo Genes (internal stop) :: 20 of 161\nPseudo Genes (multiple problems) :: 37 of 161\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
White-rot fungus Phanerochaete chrysosporium
COORDINATES: similar to AA sequence:RefSeq:WP_013722692.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000732290.1
GO:0045340 - mercury ion binding [Evidence IEA]
mercury resistance system periplasmic binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:YP_005229639.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182511.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012732770.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012732769.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732768.1
COORDINATES: similar to AA sequence:RefSeq:WP_018419055.1
COORDINATES: similar to AA sequence:RefSeq:WP_011485653.1
COORDINATES: similar to AA sequence:RefSeq:WP_020180556.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404391.1
COORDINATES: similar to AA sequence:RefSeq:WP_006760105.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011660115.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
heavy metal response regulator transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007589570.1
COORDINATES: similar to AA sequence:RefSeq:WP_007589569.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012401425.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067670.1
COORDINATES: similar to AA sequence:RefSeq:WP_007589565.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper homeostasis periplasmic binding protein CopC
COORDINATES: similar to AA sequence:RefSeq:WP_007182830.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498496.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015601635.1
COORDINATES: similar to AA sequence:RefSeq:WP_019577757.1
COORDINATES: similar to AA sequence:RefSeq:WP_009941162.1
DUF3857 and transglutaminase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007182846.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875656.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198712.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024371.2
COORDINATES: similar to AA sequence:RefSeq:WP_018423874.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007176482.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182841.1
COORDINATES: similar to AA sequence:RefSeq:WP_014192559.1
COORDINATES: similar to AA sequence:RefSeq:WP_007186740.1
COORDINATES: similar to AA sequence:RefSeq:WP_011655767.1
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
c-type cytochrome biogenesis protein CcsB
COORDINATES: similar to AA sequence:RefSeq:WP_020070593.1
COORDINATES: protein motif:HMM:NF020123.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF022853.2
protein-disulfide reductase DsbD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019939718.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094697.1
COORDINATES: similar to AA sequence:RefSeq:WP_009892613.1
COORDINATES: similar to AA sequence:RefSeq:WP_012216283.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011491049.1
GO:0046872 - metal ion binding [Evidence IEA]
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009687816.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015282344.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334077.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007580625.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006752910.1
COORDINATES: similar to AA sequence:RefSeq:WP_007585423.1
COORDINATES: similar to AA sequence:RefSeq:WP_012400589.1
GO:0005515 - protein binding [Evidence IEA]
SET domain-containing protein-lysine N-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015004290.1
COORDINATES: similar to AA sequence:RefSeq:WP_020566220.1
COORDINATES: similar to AA sequence:RefSeq:WP_004526964.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007739916.1
Tn3 family transposase post-transcriptional regulator TnpC
COORDINATES: similar to AA sequence:RefSeq:WP_019936930.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011659569.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006493751.1
COORDINATES: similar to AA sequence:RefSeq:WP_011354023.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006495151.1
COORDINATES: similar to AA sequence:RefSeq:WP_011312782.1
COORDINATES: similar to AA sequence:RefSeq:WP_006157051.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014672.2
COORDINATES: protein motif:HMM:NF024498.2
COORDINATES: similar to AA sequence:RefSeq:WP_008343428.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008343427.1
COORDINATES: similar to AA sequence:RefSeq:WP_013263485.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021517.2
COORDINATES: similar to AA sequence:RefSeq:WP_010090602.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016184.2
GO:0016787 - hydrolase activity [Evidence IEA]
sulfur transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019657363.1
COORDINATES: similar to AA sequence:RefSeq:WP_003818458.1
COORDINATES: protein motif:HMM:NF014860.2
COORDINATES: similar to AA sequence:RefSeq:WP_011251528.1
COORDINATES: similar to AA sequence:RefSeq:WP_007808519.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354953.1
GO:0004324 - ferredoxin-NADP+ reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018717920.1
COORDINATES: similar to AA sequence:RefSeq:WP_010516197.1
COORDINATES: similar to AA sequence:RefSeq:WP_010516195.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: protein motif:HMM:NF014486.2
cbb3-type cytochrome c oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_008264236.1
COORDINATES: similar to AA sequence:RefSeq:WP_014724233.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006484960.1
COORDINATES: protein motif:HMM:NF015146.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612155.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012861.2
GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]
GO:0006821 - chloride transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007422513.1
GO:0016615 - malate dehydrogenase activity [Evidence IEA]
GO:0006108 - malate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014717784.1
COORDINATES: similar to AA sequence:RefSeq:WP_006480122.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011615226.1
COORDINATES: similar to AA sequence:RefSeq:WP_007578106.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875611.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004526.1
COORDINATES: similar to AA sequence:RefSeq:WP_003425060.1
COORDINATES: similar to AA sequence:RefSeq:WP_014503356.1
COORDINATES: similar to AA sequence:RefSeq:WP_008786692.1
COORDINATES: similar to AA sequence:RefSeq:WP_004425694.1
voltage-gated chloride channel family protein
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011490619.1
COORDINATES: similar to AA sequence:RefSeq:WP_012970362.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_018420626.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013221482.1
COORDINATES: similar to AA sequence:RefSeq:WP_008495590.1
COORDINATES: similar to AA sequence:RefSeq:WP_013594061.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590592.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338243.1
COORDINATES: similar to AA sequence:RefSeq:WP_017238311.1
COORDINATES: protein motif:HMM:NF012344.2
COORDINATES: similar to AA sequence:RefSeq:WP_019994526.1
COORDINATES: similar to AA sequence:RefSeq:WP_010441483.1
COORDINATES: similar to AA sequence:RefSeq:WP_019951763.1
cytochrome C oxidase subunit IV family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006493755.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012926.2
COORDINATES: similar to AA sequence:RefSeq:WP_008350772.1
COORDINATES: protein motif:HMM:NF022391.2
COORDINATES: similar to AA sequence:RefSeq:WP_020201765.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007732530.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344660.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013700154.1
COORDINATES: similar to AA sequence:RefSeq:WP_011546517.1
COORDINATES: similar to AA sequence:RefSeq:WP_013454184.1
GDCCVxC domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_018413261.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013341788.1
COORDINATES: similar to AA sequence:RefSeq:WP_020070888.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182840.1
beta-propeller fold lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007589578.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739150.1
COORDINATES: similar to AA sequence:RefSeq:WP_012211082.1
COORDINATES: similar to AA sequence:RefSeq:WP_009893866.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006405256.1
COORDINATES: similar to AA sequence:RefSeq:WP_012213865.1
COORDINATES: similar to AA sequence:RefSeq:WP_007589563.1
COORDINATES: similar to AA sequence:RefSeq:WP_006484631.1
COORDINATES: similar to AA sequence:RefSeq:WP_013342372.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770336.1
COORDINATES: similar to AA sequence:RefSeq:WP_019938714.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_018421941.1
COORDINATES: similar to AA sequence:RefSeq:WP_014191411.1
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018420392.1
COORDINATES: similar to AA sequence:RefSeq:WP_009934461.1
COORDINATES: similar to AA sequence:RefSeq:WP_018419060.1
COORDINATES: similar to AA sequence:RefSeq:WP_006398417.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008922068.1
COORDINATES: similar to AA sequence:RefSeq:WP_018419032.1
GO:0051049 - regulation of transport [Evidence IEA]
phosphate signaling complex protein PhoU
COORDINATES: similar to AA sequence:RefSeq:WP_007732523.1
COORDINATES: similar to AA sequence:RefSeq:WP_019939660.1
COORDINATES: protein motif:HMM:NF027890.2
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF014385.2
COORDINATES: similar to AA sequence:RefSeq:WP_007182802.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182803.1
COORDINATES: similar to AA sequence:RefSeq:WP_007176812.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011316282.1
GO:0003674 - molecular_function [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012428208.1
GO:0045275 - respiratory chain complex III [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA]
ubiquinol-cytochrome c reductase iron-sulfur subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007742987.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337509.1
COORDINATES: protein motif:HMM:NF027613.2
GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011300468.1
COORDINATES: similar to AA sequence:RefSeq:WP_007749694.1
COORDINATES: similar to AA sequence:RefSeq:WP_012652523.1
Qat anti-phage system TatD family nuclease QatD
COORDINATES: similar to AA sequence:RefSeq:WP_018991607.1
Qat anti-phage system QueC-like protein QatC
Qat anti-phage system associated protein QatB
COORDINATES: similar to AA sequence:RefSeq:WP_018991609.1
COORDINATES: similar to AA sequence:RefSeq:WP_008917785.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003247584.1
COORDINATES: similar to AA sequence:RefSeq:WP_003247586.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666148.1
COORDINATES: similar to AA sequence:RefSeq:WP_007946535.1
COORDINATES: similar to AA sequence:RefSeq:WP_012211067.1
COORDINATES: similar to AA sequence:RefSeq:WP_012211068.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691818.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: protein motif:HMM:NF036894.2
COORDINATES: similar to AA sequence:RefSeq:WP_014897056.1
GO:0019867 - outer membrane [Evidence IEA]
outer membrane protein assembly factor BamE
COORDINATES: similar to AA sequence:RefSeq:WP_008919003.1
COORDINATES: protein motif:HMM:NF017182.2
COORDINATES: similar to AA sequence:RefSeq:WP_011492657.1
COORDINATES: similar to AA sequence:RefSeq:WP_007584111.1
COORDINATES: similar to AA sequence:RefSeq:WP_009935582.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013311.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF019843.2
COORDINATES: protein motif:HMM:NF018536.2
COORDINATES: protein motif:HMM:NF021209.2
TrbC family F-type conjugative pilus assembly protein
COORDINATES: protein motif:HMM:NF021981.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF021212.2
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: protein motif:HMM:NF018311.2
type-F conjugative transfer system secretin TraK
COORDINATES: protein motif:HMM:NF017152.2
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: protein motif:HMM:TIGR02762.1
type IV conjugative transfer system protein TraL
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF025105.2
COORDINATES: protein motif:HMM:NF017892.2
COORDINATES: similar to AA sequence:RefSeq:WP_007739238.1
COORDINATES: similar to AA sequence:RefSeq:WP_018424020.1
COORDINATES: similar to AA sequence:RefSeq:WP_008642142.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404184.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_013699891.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012584191.1
COORDINATES: similar to AA sequence:RefSeq:WP_018422563.1
COORDINATES: similar to AA sequence:RefSeq:WP_018949013.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_010462235.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691928.1
COORDINATES: protein motif:HMM:NF018933.2
COORDINATES: similar to AA sequence:RefSeq:WP_011831490.1
COORDINATES: similar to AA sequence:RefSeq:WP_007731368.1
COORDINATES: similar to AA sequence:RefSeq:WP_004629965.1
COORDINATES: protein motif:HMM:NF037161.2
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF019997.2
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_017170444.1
COORDINATES: protein motif:HMM:NF017973.2
COORDINATES: protein motif:HMM:NF025024.2
COORDINATES: protein motif:HMM:NF022136.2
COORDINATES: similar to AA sequence:RefSeq:WP_011301218.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435640.1
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: protein motif:HMM:NF020384.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF018562.2
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: similar to AA sequence:RefSeq:WP_011616901.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346150.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012406636.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004605.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_013691841.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691842.1
COORDINATES: similar to AA sequence:RefSeq:YP_002515680.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_004195850.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]
Cd(II)/Pb(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013696188.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024183.2
COORDINATES: similar to AA sequence:RefSeq:WP_014252975.1
COORDINATES: similar to AA sequence:RefSeq:WP_012338589.1
COORDINATES: similar to AA sequence:RefSeq:WP_006482767.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252977.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009897107.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_010108925.1
heavy metal response regulator transcription factor IrlR
COORDINATES: similar to AA sequence:RefSeq:WP_006490474.1
COORDINATES: similar to AA sequence:RefSeq:WP_011492536.1
COORDINATES: similar to AA sequence:RefSeq:WP_006490473.1
COORDINATES: protein motif:HMM:NF020918.2
COORDINATES: similar to AA sequence:RefSeq:WP_007586642.1
COORDINATES: similar to AA sequence:RefSeq:WP_006157979.1
COORDINATES: similar to AA sequence:RefSeq:WP_007584678.1
COORDINATES: similar to AA sequence:RefSeq:WP_007743547.1
COORDINATES: similar to AA sequence:RefSeq:WP_012211076.1
COORDINATES: similar to AA sequence:RefSeq:WP_012338825.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094705.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094704.1
GO:0047134 - protein-disulfide reductase (NAD(P)) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013094703.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875597.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094702.1
COORDINATES: similar to AA sequence:RefSeq:WP_012211070.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094700.1
COORDINATES: similar to AA sequence:RefSeq:WP_013722086.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007179637.1
COORDINATES: similar to AA sequence:RefSeq:WP_013088216.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
thiol:disulfide interchange protein DsbA/DsbL
COORDINATES: similar to AA sequence:RefSeq:WP_009337938.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094695.1
COORDINATES: protein motif:HMM:NF017262.2
COORDINATES: similar to AA sequence:RefSeq:WP_011354302.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193026.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193025.1
COORDINATES: protein motif:HMM:NF025045.2
COORDINATES: similar to AA sequence:RefSeq:WP_009893976.1
COORDINATES: similar to AA sequence:RefSeq:WP_009241662.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435804.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435802.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435800.1
COORDINATES: similar to AA sequence:RefSeq:WP_018926356.1
GO:0008168 - methyltransferase activity [Evidence IEA]
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007183037.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_007742986.1
COORDINATES: similar to AA sequence:RefSeq:WP_008905330.1
COORDINATES: similar to AA sequence:RefSeq:WP_012081362.1
COORDINATES: similar to AA sequence:RefSeq:WP_005784465.1
COORDINATES: similar to AA sequence:RefSeq:WP_015001360.1
COORDINATES: similar to AA sequence:RefSeq:WP_011353795.1
GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004193810.1
COORDINATES: similar to AA sequence:RefSeq:WP_009890543.1
COORDINATES: similar to AA sequence:RefSeq:WP_008921947.1
GO:0016846 - carbon-sulfur lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024925.2
COORDINATES: similar to AA sequence:RefSeq:WP_012334014.1
COORDINATES: similar to AA sequence:RefSeq:WP_008923756.1
COORDINATES: similar to AA sequence:RefSeq:WP_008349194.1
COORDINATES: similar to AA sequence:RefSeq:WP_013211233.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007175944.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_013435786.1
COORDINATES: protein motif:HMM:NF023095.2
COORDINATES: similar to AA sequence:RefSeq:WP_015773201.1
COORDINATES: similar to AA sequence:RefSeq:WP_014898658.1
COORDINATES: similar to AA sequence:RefSeq:WP_009544269.1
COORDINATES: similar to AA sequence:RefSeq:WP_006103800.1
COORDINATES: similar to AA sequence:RefSeq:WP_011996751.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007730872.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094688.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009894199.1
COORDINATES: similar to AA sequence:RefSeq:WP_008217383.1
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008217384.1
COORDINATES: similar to AA sequence:RefSeq:WP_008217385.1
COORDINATES: similar to AA sequence:RefSeq:WP_008217386.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008217387.1
COORDINATES: similar to AA sequence:RefSeq:WP_018991694.1
COORDINATES: similar to AA sequence:RefSeq:WP_008217390.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343607.1
GO:0018942 - organometal metabolic process [Evidence IEA]