Carcharodon carcharias isolate sCarCar2 chromosome Y, sCarCar2.pri, whole genome shotgun sequence.
type: Entry
definition: Carcharodon carcharias isolate sCarCar2 chromosome Y, sCarCar2.pri, whole genome shotgun sequence.
sequence version: NC_054508.1
sequence date: 2021-05-03
sequence: sequence
division: CON
label: NC_054508.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA725502
dblink: SAMN12629504
keyword: WGS
keyword: RefSeq
source: Carcharodon carcharias (great white shark)
organism: Carcharodon carcharias
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Lamniformes; Alopiidae; Carcharodon.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM030006.1.\nAssembly name: sCarCar2.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/03/30. The original whole-genome shotgun project has the\naccession JAGDEE000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 05-FEB-2021\nAssembly Method :: FALCON v. DX 2.0.1; FALCON-Unzip v. DX\n 1.2.1; purge_dups v. DX 19-08-10;\n scaff10X v. DX 2.0.3; bionano Solve v. DX\n 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow\n polishing and gap filling v. DX 7.0.1.1;\n Longranger Align DX v. 2.2.2.1; freebayes\n DX v. 19-07-11; gEVAL manual curation v.\n 2021-02-05; VGP assembly pipeline v. 1.6\nAssembly Name :: sCarCar2.pri\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 66.84x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Carcharodon carcharias Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.6\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 5000788
topology: linear
so has quality: SO_0000987
location: 1..5000788
location: region:1-5000788:1
RO_0002162: 13397

NC_054508
type: RefSeq
SIO_000068: refseq

PRJNA725502
type: BioProject
SIO_000068: bioproject

SAMN12629504
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5000788:1
position: 5000788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5000788:1:source
so part of: sequence
organism: Carcharodon carcharias
mol type: genomic DNA
isolate: sCarCar2
chromosome: Y
sex: male
tissue type: blood
dev stage: juvenile
country: USA
lat lon: 33.782158 N 118.12249 W
collection date: 2019-01-30
collected by: Chris Lowe, Kady Lyons

13397
type: Taxonomy
SIO_000068: taxonomy

LOC121273384
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: LOC121273384
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 395592..586152
location: region:395592-586152:1
so has part: feature:395592-586152:1:exon
subclass of: SO_0000010

121273384
type: Gene
SIO_000068: ncbigene

position:395592:1
position: 395592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:586152:1
position: 586152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:395592-586152:1:exon

LOC121273384
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13397
gene: LOC121273384
product: homeobox protein Hox-C13-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
transcript id: XM_041180562.1
SIO_010081: LOC121273384
subclass of: SO_0000673
so part of: LOC121273384
location: join(395592..395669,579177..579450,585896..586152)
location: region:395592-586152:1
so has part: feature:395592-395669:1:exon
so has part: feature:579177-579450:1:exon
so has part: feature:585896-586152:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:395592-395669:1:exon

position:395669:1
position: 395669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:579177-579450:1:exon

position:579177:1
position: 579177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:579450:1
position: 579450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:585896-586152:1:exon

position:585896:1
position: 585896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121273384
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: LOC121273384
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C13-like
translation: MQRAEGGAQERGKRAVTSEKGLGVGEPHQQPPPLGRGGPHHPTPGACWPHGAQSRRPVYPAYPTAPGCFELGDPPRRDLWLPMDGQTPWNLAAAWDAPLDCAQEPAQTRPIWRSPCPDIVSLQSEVGGCQRGRKKWVPYTKMQLKELEREYAAGKFITKEKRRKISAMVNLSERQVTIWFQNRRVKEKKLEGKSRLAHAHTT
SIO_010081: LOC121273384
subclass of: SO_0000673
so part of: LOC121273384
location: join(395592..395669,579177..579450,585896..586152)
location: region:395592-586152:1
so has part: feature:395592-395669:1:exon
so has part: feature:579177-579450:1:exon
so has part: feature:585896-586152:1:exon

XP_041036496.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:395592-395669:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:579177-579450:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:585896-586152:1:exon

hoxc12a
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: hoxc12a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 620373..623267
location: region:620373-623267:1
so has part: feature:620373-623267:1:exon
subclass of: SO_0000010

121273386
type: Gene
SIO_000068: ncbigene

position:620373:1
position: 620373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:623267:1
position: 623267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:620373-623267:1:exon

hoxc12a
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13397
gene: hoxc12a
product: homeobox C12a
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
transcript id: XM_041180565.1
SIO_010081: hoxc12a
subclass of: SO_0000673
so part of: hoxc12a
location: join(620373..620904,623026..623267)
location: region:620373-623267:1
so has part: feature:620373-620904:1:exon
so has part: feature:623026-623267:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:620373-620904:1:exon

position:620904:1
position: 620904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:623026-623267:1:exon

position:623026:1
position: 623026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

hoxc12a
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: hoxc12a
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C12a
translation: MADPTLLNAGLLGPLLNVHTGDAFYIPNFRASGAQLAALPPLPYSRRDGVCSLPWAAGVDPPCSGYPQPYLGGPPPVALDPSFDARRSDEAGGKVPYPPRESAADAMKREERDGEPGSALHDPSGLGYPSHPGGTETLARSHSRWESDSLSPLVNGGDRNPAVSPPPADHGAGLVGEGPTPWYPLHSRTRKKRRPYSKVQIAELEGEFMLNEFITRQRRRELSDRLTLSDQQVKIWFQNRRMKKKRQLIREQALSFF
SIO_010081: hoxc12a
subclass of: SO_0000673
so part of: hoxc12a
location: join(620373..620904,623026..623267)
location: region:620373-623267:1
so has part: feature:620373-620904:1:exon
so has part: feature:623026-623267:1:exon

XP_041036499.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:620373-620904:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:623026-623267:1:exon

LOC121273387
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: LOC121273387
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 671067..674215
location: region:671067-674215:1
so has part: feature:671067-674215:1:exon
subclass of: SO_0000010

121273387
type: Gene
SIO_000068: ncbigene

position:671067:1
position: 671067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:674215:1
position: 674215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:671067-674215:1:exon

LOC121273387
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13397
gene: LOC121273387
product: homeobox protein Hox-C11-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041180566.1
SIO_010081: LOC121273387
subclass of: SO_0000673
so part of: LOC121273387
location: join(671067..671534,671688..671944,673983..674215)
location: region:671067-674215:1
so has part: feature:671067-671534:1:exon
so has part: feature:671688-671944:1:exon
so has part: feature:673983-674215:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:671067-671534:1:exon

position:671534:1
position: 671534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:671688-671944:1:exon

position:671688:1
position: 671688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:671944:1
position: 671944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:673983-674215:1:exon

position:673983:1
position: 673983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121273387
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: LOC121273387
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C11-like
translation: MFNSVSLSNLCSQSRKDRPAMYLPGCAYYLPDFGAVPPFVPARQVAYPHASGIPQVQAAREASYGLEAADDSMRREALMQSPPPPPPPPGLPPPGPPPPPPPPPPCSVAGMFLRSERAVLPQAFDRFFDTANGGAALTVQHPAAAAAAAAAAAAGKLCPHKGDQADTGAAPVPSGGQEERAAAAAAAAAAAPGDTVENSGSNPSGLRTRKKRCPYTKFQIRELEREFFFNVYINKEKRLQLSRVLHLSDRQVKIWFQNRRMKEKKLNRDRLQYLSGNPLL
SIO_010081: LOC121273387
subclass of: SO_0000673
so part of: LOC121273387
location: join(671182..671534,671688..671944,673983..674215)
location: region:671182-674215:1
so has part: feature:671182-671534:1:exon
so has part: feature:671688-671944:1:exon
so has part: feature:673983-674215:1:exon

XP_041036500.1
type: Protein
SIO_000068: ncbiprotein

position:671182:1
position: 671182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:671182-671534:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:671688-671944:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:673983-674215:1:exon

LOC121273388
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: LOC121273388
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 696861..>718619
location: region:696861-718619:1
so has part: feature:696861-718619:1:exon
subclass of: SO_0000010

121273388
type: Gene
SIO_000068: ncbigene

position:696861:1
position: 696861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:718619:1
position: 718619
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:696861-718619:1:exon

LOC121273388
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13397
gene: LOC121273388
product: homeobox protein Hox-C10-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins
transcript id: XM_041180567.1
SIO_010081: LOC121273388
subclass of: SO_0000673
so part of: LOC121273388
location: join(696861..696954,701467..702375,710329..710574,718597..>718619)
location: region:696861-718619:1
so has part: feature:696861-696954:1:exon
so has part: feature:701467-702375:1:exon
so has part: feature:710329-710574:1:exon
so has part: feature:718597-718619:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:696861-696954:1:exon

position:696954:1
position: 696954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:701467-702375:1:exon

position:701467:1
position: 701467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:702375:1
position: 702375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:710329-710574:1:exon

position:710329:1
position: 710329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:710574:1
position: 710574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:718597-718619:1:exon

position:718597:1
position: 718597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121273388
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: LOC121273388
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C10-like
translation: MVCVPSIVNRTVRFVFKLFFMKQKAPAISNNYVSPQELQFCLTLSCADGVAPHAYMMDPLPGLCRSESAGGRAGAYLPAGGEFGCAVGRCPLLPGLSKRDEVGSLAGPYPYHPRLQGWSDVARGYRVDQPVVRSLKPCSFPAPAAAAAKEESVRCTYAGPEGAGKRAADGALFRRPTPDPAPADGEIPVPGYFRVSPGYRAAGPAALPPPCRADGRHGPAFQPASSLGVDALPERSSAAGGRSGSGGPSEALTDHRQPGKGQTGGSQDPAEDCGGGGGGGGASSSRCLGAEPARAAAAAAAAADPETPGAGEQTAAVITEELELASETSDNELKGKIKAEGESGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSIDLTDRQVKIWFQNRRMKLKKLSRESRVRRGNTGHT
SIO_010081: LOC121273388
subclass of: SO_0000673
so part of: LOC121273388
location: join(696861..696954,701467..702375,710329..710574,718597..>718619)
location: region:696861-718619:1
so has part: feature:696861-696954:1:exon
so has part: feature:701467-702375:1:exon
so has part: feature:710329-710574:1:exon
so has part: feature:718597-718619:1:exon

XP_041036501.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:696861-696954:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:701467-702375:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:710329-710574:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:718597-718619:1:exon

LOC121273389
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: LOC121273389
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 737852..743993
location: region:737852-743993:1
so has part: feature:737852-743993:1:exon
subclass of: SO_0000010

121273389
type: Gene
SIO_000068: ncbigene

position:737852:1
position: 737852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:743993:1
position: 743993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:737852-743993:1:exon

LOC121273389
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13397
gene: LOC121273389
product: homeobox protein Hox-C9-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins
transcript id: XM_041180568.1
SIO_010081: LOC121273389
subclass of: SO_0000673
so part of: LOC121273389
location: join(737852..738494,743755..743993)
location: region:737852-743993:1
so has part: feature:737852-738494:1:exon
so has part: feature:743755-743993:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:737852-738494:1:exon

position:738494:1
position: 738494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:743755-743993:1:exon

position:743755:1
position: 743755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121273389
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: LOC121273389
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C9-like
translation: MSAGGSLAHYYVDPLVGHEEEEMFPSRLAAPAASLPAAGVMGDYVDYPPCSFAPASPPLFANPWVRAPPPHSLSGGGGGGGGGGGGGCGGLYRPYPQQPPHLRADARFVRSCWLEPLVAGPLSLHGFPGGGPGPGARHLAAKPGSVAAAAAAAAAAAAPPRGGESASSAGGRRFTDYLYGSPPDTVSQCLPVSPPVADNLQAAKRQEDAEEVDPSSQAASWIHARSARKKRCPYSKYQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKVKKLNKGKVEKP
SIO_010081: LOC121273389
subclass of: SO_0000673
so part of: LOC121273389
location: join(737852..738494,743755..743993)
location: region:737852-743993:1
so has part: feature:737852-738494:1:exon
so has part: feature:743755-743993:1:exon

XP_041036502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:737852-738494:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:743755-743993:1:exon

LOC121273391
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: LOC121273391
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 760932..765923
location: region:760932-765923:1
so has part: feature:760932-765923:1:exon
subclass of: SO_0000010

121273391
type: Gene
SIO_000068: ncbigene

position:760932:1
position: 760932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:765923:1
position: 765923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:760932-765923:1:exon

LOC121273391
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13397
gene: LOC121273391
product: homeobox protein Hox-C8-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 73 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041180570.1
SIO_010081: LOC121273391
subclass of: SO_0000673
so part of: LOC121273391
location: join(760932..761379,765610..765923)
location: region:760932-765923:1
so has part: feature:760932-761379:1:exon
so has part: feature:765610-765923:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:760932-761379:1:exon

position:761379:1
position: 761379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:765610-765923:1:exon

position:765610:1
position: 765610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121273391
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: LOC121273391
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C8-like
translation: MSFYPVNPLFSKCKPNESLEPRDSYSDCRFPSRGHSLVYPPGAGAAGFQPLSAHLQDIFHHHHQHHHHGSSSLPASGYQQGACGLPCHGEPKFYGYDLLPRQPHYGGVQPEAAMLPYADCKAPAAGADGPGNLTQQSPNNLVFPWMRPHAPGRRSGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNRDKFPSAREEGKGQEAGNEEGDKGEDEKQEEGEGEEGGKE
SIO_010081: LOC121273391
subclass of: SO_0000673
so part of: LOC121273391
location: join(760932..761379,765610..765923)
location: region:760932-765923:1
so has part: feature:760932-761379:1:exon
so has part: feature:765610-765923:1:exon

XP_041036504.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:760932-761379:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:765610-765923:1:exon

LOC121273390
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: LOC121273390
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 792990..795438
location: region:792990-795438:1
so has part: feature:792990-795438:1:exon
subclass of: SO_0000010

121273390
type: Gene
SIO_000068: ncbigene

position:792990:1
position: 792990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:795438:1
position: 795438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:792990-795438:1:exon

LOC121273390
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13397
gene: LOC121273390
product: homeobox protein Hox-C6-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins, and 60% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_041180569.1
SIO_010081: LOC121273390
subclass of: SO_0000673
so part of: LOC121273390
location: join(792990..793410,795098..795438)
location: region:792990-795438:1
so has part: feature:792990-793410:1:exon
so has part: feature:795098-795438:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:792990-793410:1:exon

position:793410:1
position: 793410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:795098-795438:1:exon

position:795098:1
position: 795098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121273390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: LOC121273390
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C6-like
translation: MNSYFGCPPLPCRLIPSSGAGSAAFESVRDPPAHGGRVSQSPIYPGAYYPPAAASAAAAAAAAFRLRFEYEASAFYRSKDLPTGECRQGGQTGGGGGGGGGGGGGGEQLVVHGCHSRRELGEPEGSFPVYPWMQRANSHNGVGLGPDRRRGRQIYSRYQILELEKEFHFNRYLARRRRVEIAGALGLSEQQIKIWFQNRRMKWKKEVSLASVSAADGQGDQEK
SIO_010081: LOC121273390
subclass of: SO_0000673
so part of: LOC121273390
location: join(792990..793410,795098..795348)
location: region:792990-795348:1
so has part: feature:792990-793410:1:exon
so has part: feature:795098-795348:1:exon

XP_041036503.1
type: Protein
SIO_000068: ncbiprotein

position:795348:1
position: 795348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:792990-793410:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:795098-795348:1:exon

LOC121273385
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: LOC121273385
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2150987..2153309
location: region:2150987-2153309:1
so has part: feature:2150987-2153309:1:exon
subclass of: SO_0000010

121273385
type: Gene
SIO_000068: ncbigene

position:2150987:1
position: 2150987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2153309:1
position: 2153309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2150987-2153309:1:exon

LOC121273385
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13397
gene: LOC121273385
product: zinc finger and BTB domain-containing protein 39-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_041180563.1
SIO_010081: LOC121273385
subclass of: SO_0000673
so part of: LOC121273385
location: 2150987..2153309
location: region:2150987-2153309:1
so has part: feature:2150987-2153309:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2150987-2153309:1:exon

LOC121273385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: LOC121273385
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger and BTB domain-containing protein 39-like
translation: MGMRIKLHSADHPNNLLKELNKFRLSETMCDVIIVVGNRTFSAHKSVLACAAGYFQKLFLNSEVNTARTYVVDFITPANFERILSFIYTAELFTDLINVGVIYEMAEKLGMQDLLKACYSTFPDLEKTETNKPTVGPTEGYAPLTVASNDQNPPVSDSRGQGPQFCQNRGYIMQVEVGESFKSEERNLVNENAPSMPVMYQQSAKTEDNLEMEYSQSTSTENVPLTPSKGPCELYEIQSNGYYNQTSLLMAGESLKENNGSCVSNNVDLQVHSMKEMECMQFEGIEQDGLHFDDHQESRGPSEEIIELTDDSEDENLVCVKDVNGEGKSMPCQVCGKVLPPNIGLIRQHGKLHIDAKEGLCTVCGAKFTDRSSRITHVLSHIGIFLFSCDMCEMKFVTQWQVAGHRKGKPHDTNIIVQPNTILPAEANFGGSPTELFCAVCGKAMTKDYLAVKEHILSHLDMKSLSCCVCEQPSRSVCSLMWHVLSHMNISIFSCSVCGNSFVDRTVLEQHMTSHQGMEYLYECNFCSRKFRLEASYQNHVKIHKRHNLDSTKGLITQHQWLKKTLTTSPSDESTSDGQMPGVHQETLLTLPSKTNSKGNWYECEFCGKRFSHSSEFQYHLRIHSGEKPYECKLCHKFFRGRSTVKNHLKTHSGALMYCCTVCQKYCPTLNLMIKHVEMHKDGGLPPDFNIAQTFMYIVHSKQPVKIMD
SIO_010081: LOC121273385
subclass of: SO_0000673
so part of: LOC121273385
location: 2151089..2153218
location: region:2151089-2153218:1
so has part: feature:2151089-2153218:1:exon

XP_041036497.1
type: Protein
SIO_000068: ncbiprotein

position:2151089:1
position: 2151089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2153218:1
position: 2153218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2151089-2153218:1:exon