Carcharodon carcharias mitochondrion, complete genome.
type: Entry
definition: Carcharodon carcharias mitochondrion, complete genome.
sequence version: NC_022415.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_022415.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Carcharodon carcharias (great white shark)
organism: Carcharodon carcharias
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Lamniformes; Alopiidae; Carcharodon.
reference: 1
references: 23841607
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to KC914387.\n\n##Assembly-Data-START##\nSequencing Technology :: Sanger dideoxy sequencing\n##Assembly-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16744
topology: circular
so has quality: SO_0000988
location: 1..16744
location: region:1-16744:1
RO_0002162: 13397

NC_022415
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The complete mitochondrial genome of the great white shark, Carcharodon carcharias (Chondrichthyes, Lamnidae)
author: Chang, C.H.
author: Shao, K.T.
author: Lin, Y.S.
author: Fang, Y.C.
author: Ho, H.C.
journal: Mitochondrial DNA
volume: 25
issue: 5
pages: 357-358
year: 2014
pubmed: 23841607

23841607
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (26-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Chang, C.-H.
journal: Submitted (17-APR-2013) Biodiversity Research Center, Academia Sinica, 128 Academia Road Sec. 2, Taipei 11529, Taiwan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16744:1
position: 16744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16744:1:source
so part of: sequence
organism: Carcharodon carcharias
organelle: mitochondrion
mol type: genomic DNA

13397
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Phe
so part of: sequence
location: 1..71
location: region:1-71:1
so has part: feature:1-71:1:region

position:71:1
position: 71
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-71:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 13397
product: 12S ribosomal RNA
so part of: sequence
location: 72..1027
location: region:72-1027:1
so has part: feature:72-1027:1:region

position:72:1
position: 72
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1027:1
position: 1027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72-1027:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Val
so part of: sequence
location: 1025..1096
location: region:1025-1096:1
so has part: feature:1025-1096:1:region

position:1025:1
position: 1025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1096:1
position: 1096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1025-1096:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 13397
product: 16S ribosomal RNA
so part of: sequence
location: 1097..2767
location: region:1097-2767:1
so has part: feature:1097-2767:1:region

position:1097:1
position: 1097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2767:1
position: 2767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1097-2767:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Leu
so part of: sequence
location: 2767..2841
location: region:2767-2841:1
so has part: feature:2767-2841:1:region

position:2841:1
position: 2841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2767-2841:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: ND1
so part of: sequence
location: 2842..3816
location: region:2842-3816:1
so has part: feature:2842-3816:1:exon
subclass of: SO_0000010

17046285
type: Gene
SIO_000068: ncbigene

position:2842:1
position: 2842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3816:1
position: 3816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2842-3816:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MLEALLLYFISPLTYIVPILLATAFLTLVERKILGYMQLRKGPNIVGPYGLLQPIADGLKLFTKEPIYPSASSPLLFLITPTMALTLALLMWMPLPLPYSVINLNLGLLFILAISSLTVYTVLGSGWASNSKYALMGALRAVAQTISYEVSLGLILLSMIIFTGGFTLHTFNLAQETIWLIIPGWPLALMWYVSTLAETNRVPFDLTEGESELVSGFNIEYAGGSFALFFLAEYTNILLMNTLSVILFMGSSYNPLFPEISTLTLMMKATLLTLLFLWIRASYPRFRYDQLMHLVWKNFLPLTLAIMLWHIALPVATTSLPPLT
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2842..3816
location: region:2842-3816:1
so has part: feature:2842-3816:1:exon

YP_008578238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2842-3816:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Leu
so part of: sequence
location: 3819..3887
location: region:3819-3887:1
so has part: feature:3819-3887:1:region

position:3819:1
position: 3819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3887:1
position: 3887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3819-3887:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Gln
so part of: sequence
location: complement(3886..3957)
location: region:3886-3957:-1
so has part: feature:3886-3957:-1:region

position:3886:-1
position: 3886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3957:-1
position: 3957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3886-3957:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Met
so part of: sequence
location: 3959..4027
location: region:3959-4027:1
so has part: feature:3959-4027:1:region

position:3959:1
position: 3959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4027:1
position: 4027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3959-4027:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: ND2
so part of: sequence
location: 4028..5071
location: region:4028-5071:1
so has part: feature:4028-5071:1:exon
subclass of: SO_0000010

17046286
type: Gene
SIO_000068: ncbigene

position:4028:1
position: 4028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5071:1
position: 5071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4028-5071:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: ND2
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPLVLTIIISSLGLGTILTFISSHWLLVWMGLEINTLAILPLMIHQHHPRAVEASTKYFITQATASALLLFASATNAWTSGEWSLIEMINPGSATLATIALALKIGLAPLHFWLPEVLQGLNLTTGLILSTWQKLAPFAVLLQLYPSLNPNLLIFLGMLSTMVGGWGGLNQTQLRKILAYSSIAHLGWMVSILPYSYNLTQLNLILYIIMTSTTFLLFKTLNSTKINSISSSSSKSPLLSIIALMTLLSLGGLPPLSGFMPKWLILQELTKQNLIIPATVMAMTALLSLFFYLRLCYATTLTMSPAPINMLTSWRTKLSHNLILTTTASLSIFLLPITPAILMLMS
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4028..5071
location: region:4028-5071:1
so has part: feature:4028-5071:1:exon

YP_008578239.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4028-5071:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Trp
so part of: sequence
location: 5071..5141
location: region:5071-5141:1
so has part: feature:5071-5141:1:region

position:5141:1
position: 5141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5071-5141:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Ala
so part of: sequence
location: complement(5143..5211)
location: region:5143-5211:-1
so has part: feature:5143-5211:-1:region

position:5143:-1
position: 5143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5211:-1
position: 5211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5143-5211:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Asp
so part of: sequence
location: complement(5212..5284)
location: region:5212-5284:-1
so has part: feature:5212-5284:-1:region

position:5212:-1
position: 5212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5284:-1
position: 5284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5212-5284:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Cys
so part of: sequence
location: complement(5318..5384)
location: region:5318-5384:-1
so has part: feature:5318-5384:-1:region

position:5318:-1
position: 5318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5384:-1
position: 5384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5318-5384:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Tyr
so part of: sequence
location: complement(5385..5453)
location: region:5385-5453:-1
so has part: feature:5385-5453:-1:region

position:5385:-1
position: 5385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5453:-1
position: 5453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5385-5453:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: COX1
so part of: sequence
location: 5455..7008
location: region:5455-7008:1
so has part: feature:5455-7008:1:exon
subclass of: SO_0000010

17046287
type: Gene
SIO_000068: ncbigene

position:5455:1
position: 5455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7008:1
position: 7008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5455-7008:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAINRWLFSTNHKDIGTLYLIFGAWAGMVGTALSLLIRAELGQPGSLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASAGVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGISSILASINFITTIINMKPPAISQYQTPLFVWSILVTTILLLLALPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSVKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFIHWFPLMTGYTLHSTWTKIQFAVMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSLISLVAVIMLLFIIWEAFASKREVLSVELPHTNVEWLHGCPPPYHTYEEPAFVQVQRNL
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5455..7008
location: region:5455-7008:1
so has part: feature:5455-7008:1:exon

YP_008578240.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5455-7008:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Ser
so part of: sequence
location: complement(7011..7081)
location: region:7011-7081:-1
so has part: feature:7011-7081:-1:region

position:7011:-1
position: 7011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7081:-1
position: 7081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7011-7081:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Asn
so part of: sequence
location: 7086..7154
location: region:7086-7154:1
so has part: feature:7086-7154:1:region

position:7086:1
position: 7086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7154:1
position: 7154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7086-7154:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: COX2
so part of: sequence
location: 7159..7849
location: region:7159-7849:1
so has part: feature:7159-7849:1:exon
subclass of: SO_0000010

17046288
type: Gene
SIO_000068: ncbigene

position:7159:1
position: 7159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7849:1
position: 7849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7159-7849:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7849,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELIHFHDHTLMIVFLISALVLYIITAMVSTKLTNKYILDSQEIEIVWTILPAIILIMIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMIQTQDLTPGQFRLLETDHRMVVPMESPVRVLVSAEDVLHSWAVPALGVKMDAVPGRLNQTAFIISRPGVYYGQCSEICGANHSFMPIVVEAVPLEHFEAWSSLMLEEA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7159..7849
location: region:7159-7849:1
so has part: feature:7159-7849:1:exon

YP_008578241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7159-7849:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Lys
so part of: sequence
location: 7850..7923
location: region:7850-7923:1
so has part: feature:7850-7923:1:region

position:7850:1
position: 7850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7923:1
position: 7923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7850-7923:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: ATP8
so part of: sequence
location: 7925..8092
location: region:7925-8092:1
so has part: feature:7925-8092:1:exon
subclass of: SO_0000010

17046289
type: Gene
SIO_000068: ncbigene

position:7925:1
position: 7925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8092:1
position: 8092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7925-8092:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPHPWLMILLFSWTIFLIILPKKVTNHLYSNNPALKSTEKSKPEPWNWPWS
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7925..8092
location: region:7925-8092:1
so has part: feature:7925-8092:1:exon

YP_008578242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7925-8092:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: ATP6
so part of: sequence
location: 8083..8766
location: region:8083-8766:1
so has part: feature:8083-8766:1:exon
subclass of: SO_0000010

17046290
type: Gene
SIO_000068: ncbigene

position:8083:1
position: 8083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8766:1
position: 8766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8083-8766:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MILNFFDQFLSPSILGIPLIILAIALPSLIFPTPTNRWLNNRLMTLQSWFINRFTYQLIQPMNFTGHKWAMLFTTLMLFLITINLLGLLPYTFTPTTQLSLNMAFALPLWFTTVLVGMLNQPTVALGHFLPEGTPTLLVPALIIIETISLFIRPLALGVRLTANLTAGHLLMQLIATATFMLITIMPAVALLTSIILFLLTILEVAVAMIQAYVFVLLLSLYLQENI
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8083..8766
location: region:8083-8766:1
so has part: feature:8083-8766:1:exon

YP_008578243.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8083-8766:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: COX3
so part of: sequence
location: 8766..9551
location: region:8766-9551:1
so has part: feature:8766-9551:1:exon
subclass of: SO_0000010

17046291
type: Gene
SIO_000068: ncbigene

position:9551:1
position: 9551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8766-9551:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: COX3
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGATAALLMTSGLAIWFHFHSLILLYLGLTLLLLTMVQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGISPMDPFEVPLLNTAVLLASGVTVTWTHHSLMEGNRKETIQALTLTIFLGVYFTALQAMEYYEAPFTIADGIYGTTFFVATGFHGLHVIIGSTFLMICLLRQIQYHFTSKHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8766..9551
location: region:8766-9551:1
so has part: feature:8766-9551:1:exon

YP_008578244.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8766-9551:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Gly
so part of: sequence
location: 9554..9623
location: region:9554-9623:1
so has part: feature:9554-9623:1:region

position:9554:1
position: 9554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9623:1
position: 9623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9554-9623:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: ND3
so part of: sequence
location: 9624..9974
location: region:9624-9974:1
so has part: feature:9624-9974:1:exon
subclass of: SO_0000010

17046292
type: Gene
SIO_000068: ncbigene

position:9624:1
position: 9624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9974:1
position: 9974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9624-9974:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: ND3
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLIMSSVAATALISLILVFITFWLPSLNPDNEKLSPYECGFDPLGNARLPFSLRFFLVAILFLLFDLEIALLLPLPWGNQLLSPLHTLFWAMTILILLTLGLIYEWLQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9624..9974
location: region:9624-9974:1
so has part: feature:9624-9974:1:exon

YP_008578245.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9624-9974:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Arg
so part of: sequence
location: 9973..10043
location: region:9973-10043:1
so has part: feature:9973-10043:1:region

position:9973:1
position: 9973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10043:1
position: 10043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9973-10043:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: ND4L
so part of: sequence
location: 10044..10340
location: region:10044-10340:1
so has part: feature:10044-10340:1:exon
subclass of: SO_0000010

17046293
type: Gene
SIO_000068: ncbigene

position:10044:1
position: 10044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10340:1
position: 10340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10044-10340:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MSPMYFSLNSAFMLGLMGLALNRYHLLSALLCLESMLLTLFITIAIWTLTLNSTSSSITPMILLTFSACEASAGLAILVATSRSHGSDNLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10044..10340
location: region:10044-10340:1
so has part: feature:10044-10340:1:exon

YP_008578246.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10044-10340:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: ND4
so part of: sequence
location: 10334..11714
location: region:10334-11714:1
so has part: feature:10334-11714:1:exon
subclass of: SO_0000010

17046294
type: Gene
SIO_000068: ncbigene

position:10334:1
position: 10334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11714:1
position: 11714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10334-11714:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11714,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTIMLFPTTWIINKKWLWPMTTSYSLLIALLSLVWFKWNTDIGWDFSNQFMAIDPLSAPLLILTCWLLPLMILASQNHISTEPETRQRMYLSLLISLQTFLIMAFSATEMIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLIGSLPLLIALLLMQNNLGTLSMLIMQHTQPMTLTSWADKLWWVACLFAFLVKMPLYGMHLWLPKAHVEAPIAGSMILAAVLLKLGGYGMMRIIVMLNPLTKEMAYPFLILAIWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVAGAILIQTPWSFAGAITLMIAHGLISSALFCLANTNYERVHSRTMLLARGMQIIFPLMATWWFLAILANLALPPSPNFMGELLIITSLFNWSNWTITLSGLGVLITASYSLYMFLMIQRGPTPYHILSLNPSHTREHLLLSLHLMPVLLLMFKPELIWGWTL
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10334..11714
location: region:10334-11714:1
so has part: feature:10334-11714:1:exon

YP_008578247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10334-11714:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-His
so part of: sequence
location: 11715..11783
location: region:11715-11783:1
so has part: feature:11715-11783:1:region

position:11715:1
position: 11715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11783:1
position: 11783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11715-11783:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Ser
so part of: sequence
location: 11784..11850
location: region:11784-11850:1
so has part: feature:11784-11850:1:region

position:11784:1
position: 11784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11850:1
position: 11850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11784-11850:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Leu
so part of: sequence
location: 11851..11922
location: region:11851-11922:1
so has part: feature:11851-11922:1:region

position:11851:1
position: 11851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11922:1
position: 11922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11851-11922:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: ND5
so part of: sequence
location: 11923..13752
location: region:11923-13752:1
so has part: feature:11923-13752:1:exon
subclass of: SO_0000010

17046295
type: Gene
SIO_000068: ncbigene

position:11923:1
position: 11923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13752:1
position: 13752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11923-13752:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MNTIFNSSFLLIFVTLLFPLMTSLNPKELTPNWASSYAKTAVKISFFISLIPLSIFLDQGLESIMTNYNWINIGPFDINMSFKFDTYSVLFTPVALYVTWSILEFALWYMYSDPNINRFFKYLLLFLISMIILVTANNMFQLFIGWEGVGIMSFLLIGWWHSRTDANTAALQAVIYNRVGDIGLILSMAWLAMNLNSWEIQQLFILSKDMNLTLPLLGLVLAAAGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLIHNNQLILTTCLCLGALTTLFTATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHKLLPFTSSSLTIGSLALMGMPFLSGFFSKDAIIEAMNTSHLNAWALILTLIATSFTAIYSLRLIFFTLMNFPRFNSLSPINENNPLIINPIKRLAYGSILSGLIITSNMIPTKTQIMTMIPLLKLSALLITIAGLLLALELANLTNSQLKMTPTLYPHHFSNMLGYFPQIIHRLLPKINLSWAQHVSTHLIDQTWSEKIGPKSAFIQQTPLIKLSTQPQQGYIKVYLTLLFLTLALAMLTTLT
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11923..13752
location: region:11923-13752:1
so has part: feature:11923-13752:1:exon

YP_008578248.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11923-13752:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: ND6
so part of: sequence
location: complement(13748..14269)
location: region:13748-14269:-1
so has part: feature:13748-14269:-1:exon
subclass of: SO_0000010

17046296
type: Gene
SIO_000068: ncbigene

position:13748:-1
position: 13748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14269:-1
position: 14269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13748-14269:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MVYFMFLMMVCLVLGLMGVASNPSPYYAALGLVMAAGMGCGLLVGHGGSFLSLVLFLIYLGGMLVVFAYTAALAAEPYPESWGNWSVLLYVGFYLVMLFFVGNYFMVEWFELDWSGVEELSNMEMTRGDFVGVALLYEDGGWLLVLSGWVLLLTLFVVLELTRGLAWGTLRVV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13748..14269)
location: region:13748-14269:-1
so has part: feature:13748-14269:-1:exon

YP_008578249.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13748-14269:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Gln
so part of: sequence
location: complement(14270..14339)
location: region:14270-14339:-1
so has part: feature:14270-14339:-1:region

position:14270:-1
position: 14270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14339:-1
position: 14339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14270-14339:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 13397
gene: CYTB
so part of: sequence
location: 14342..15487
location: region:14342-15487:1
so has part: feature:14342-15487:1:exon
subclass of: SO_0000010

17046297
type: Gene
SIO_000068: ncbigene

position:14342:1
position: 14342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15487:1
position: 15487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14342-15487:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13397
gene: CYTB
codon start: 1
transl table: 2
product: cytochrome b
translation: MALNIRKIHPLLKIMNQTLIDLPAPSNISIWWNFGSLLGLCLVIQIVTGLFLAMHYTADITMAFSSVTHICRDVNYGWLIRNIHANGASLFFVCIYFHIARGLYYGSYLYKETWNIGVILLFLLMATAFVGYVLPWGQMSFWGATVITNLLSAFPYIGDTLVQWIWGGFSVDNATLTRFFAFHFLLPFLITALMIIHILFLHETGSNNPMGLNSDMDKISFHPYFIYKDALGFLSLLILLGILALFLPNLLGDAENFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILILMLVPFLHTSKQRSSTFRPLTQVFFWILVANMLVLTWIGGQPVEQPFILIGQIASISYFSLFLIAIPLAGWWENKILGLN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14342..15487
location: region:14342-15487:1
so has part: feature:14342-15487:1:exon

YP_008578250.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14342-15487:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Thr
so part of: sequence
location: 15487..15558
location: region:15487-15558:1
so has part: feature:15487-15558:1:region

position:15558:1
position: 15558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15487-15558:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 13397
product: tRNA-Pro
so part of: sequence
location: complement(15561..15629)
location: region:15561-15629:-1
so has part: feature:15561-15629:-1:region

position:15561:-1
position: 15561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15629:-1
position: 15629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15561-15629:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 13397
so part of: sequence
location: 15630..16744
location: region:15630-16744:1
so has part: feature:15630-16744:1:region

position:15630:1
position: 15630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15630-16744:1:region