Pseudorhizobium flavum strain YW14 plasmid 2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Pseudorhizobium.
Submitted (20-OCT-2020) UNIVERSITY COLLEGE LONDON, UCL Genetics Institute, Gower Street, London WC1E 6BT, United Kingdom
Submitted (07-OCT-2019) UNIVERSITY COLLEGE LONDON, UCL Genetics Institute, Gower Street, London WC1E 6BT, United Kingdom
REFSEQ INFORMATION: The reference sequence is identical to\nLR723671.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 04:57:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,621\nCDSs (total) :: 4,558\nGenes (coding) :: 4,447\nCDSs (with protein) :: 4,447\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 111\nCDSs (without protein) :: 111\nPseudo Genes (ambiguous residues) :: 0 of 111\nPseudo Genes (frameshifted) :: 53 of 111\nPseudo Genes (incomplete) :: 79 of 111\nPseudo Genes (internal stop) :: 19 of 111\nPseudo Genes (multiple problems) :: 33 of 111\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Paddy soil under the long-term application of triazophos insecticide
COORDINATES: similar to AA sequence:RefSeq:WP_011982997.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011654579.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071689.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011650575.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015497614.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_009489047.1
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015905.2
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017665661.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006914.0
GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
2-oxoglutarate dehydrogenase E1 component
COORDINATES: protein motif:HMM:NF013757.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010401860.1
COORDINATES: protein motif:HMM:NF014564.2
CaiB/BaiF CoA-transferase family protein
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF012656.2
GO:0008410 - CoA-transferase activity [Evidence IEA]
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016844202.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008346853.1
COORDINATES: similar to AA sequence:RefSeq:WP_019013601.1
COORDINATES: protein motif:HMM:NF012596.2
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013521038.1
COORDINATES: similar to AA sequence:RefSeq:WP_005793324.1
COORDINATES: protein motif:HMM:NF024825.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014684.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_006904258.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012941225.1
COORDINATES: similar to AA sequence:RefSeq:WP_014329442.1
MaoC family dehydratase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014329441.1
GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017966359.1
GO:0009055 - electron transfer activity [Evidence IEA]
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003533953.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018329607.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004174 - electron-transferring-flavoprotein dehydrogenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
electron transfer flavoprotein-ubiquinone oxidoreductase
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011982815.1
GO:0004736 - pyruvate carboxylase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020200591.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612399.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003501156.1
COORDINATES: similar to AA sequence:RefSeq:WP_013650732.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009820038.1
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009504353.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504351.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009504349.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016735570.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF024934.2
COORDINATES: similar to AA sequence:RefSeq:WP_052096176.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003495445.1
COORDINATES: similar to AA sequence:RefSeq:WP_012226942.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006727355.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004431340.1
COORDINATES: similar to AA sequence:RefSeq:WP_018010711.1
ISL3-like element ISRsp8 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012489415.1
COORDINATES: similar to AA sequence:RefSeq:WP_020810857.1
COORDINATES: similar to AA sequence:RefSeq:WP_020011760.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0042908 - xenobiotic transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003523368.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007766244.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_009764388.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_052642687.1
IS6-like element ISRsp9 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_009450488.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450490.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450491.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450493.1
COORDINATES: similar to AA sequence:RefSeq:WP_011204278.1
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_009450496.1
COORDINATES: similar to AA sequence:RefSeq:WP_012495758.1
GO:0015501 - glutamate:sodium symporter activity [Evidence IEA]
GO:0015813 - L-glutamate transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009450504.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012091810.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ribosome-associated ATPase/putative transporter RbbA
COORDINATES: similar to AA sequence:RefSeq:WP_006174421.1
COORDINATES: similar to AA sequence:RefSeq:WP_007754820.1
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: similar to AA sequence:RefSeq:WP_011581575.1
COORDINATES: similar to AA sequence:RefSeq:WP_011581574.1
GO:0016990 - arginine deiminase activity [Evidence IEA]
GO:0019546 - arginine deiminase pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011261198.1
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011983034.1
GO:0008804 - carbamate kinase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018210340.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558132.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566648.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341926.1
COORDINATES: protein motif:HMM:NF024554.2
DUF3991 and toprim domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018326272.1
COORDINATES: similar to AA sequence:RefSeq:WP_013650718.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018326269.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018326268.1
COORDINATES: similar to AA sequence:RefSeq:WP_018326267.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482054.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516741.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017273099.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477327.1
COORDINATES: similar to AA sequence:RefSeq:WP_004676096.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477329.1
COORDINATES: similar to AA sequence:RefSeq:WP_017273097.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477331.1
COORDINATES: similar to AA sequence:RefSeq:WP_011842325.1
COORDINATES: similar to AA sequence:RefSeq:WP_011842324.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011842323.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098125.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_020397338.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_020046838.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048127.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_007536740.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_011427445.1
COORDINATES: similar to AA sequence:RefSeq:WP_007536743.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011427447.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518857.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384747.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF020789.2
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017270068.1
autoinducer binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020048151.1
IncP-type conjugal transfer protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_020048152.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427455.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_018482029.1
COORDINATES: similar to AA sequence:RefSeq:WP_018325666.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_012477354.1
GO:0009292 - horizontal gene transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018210390.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_020048158.1
COORDINATES: similar to AA sequence:RefSeq:WP_015647762.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538597.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767702.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767704.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006724029.1
COORDINATES: similar to AA sequence:RefSeq:WP_006724028.1
COORDINATES: similar to AA sequence:RefSeq:WP_003510290.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523563.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559807.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559806.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012559805.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_003518564.1
COORDINATES: protein motif:HMM:NF025027.2
COORDINATES: similar to AA sequence:RefSeq:WP_006021192.1
patatin-like phospholipase family protein
COORDINATES: protein motif:HMM:NF024486.2
COORDINATES: protein motif:HMM:NF025612.2
bacteriophage abortive infection AbiH family protein
COORDINATES: protein motif:HMM:NF012307.2
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007792467.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_086558212.1
COORDINATES: protein motif:HMM:NF012354.2
COORDINATES: similar to AA sequence:RefSeq:WP_006468722.1
GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]; GO:0033294 - ectoine binding [Evidence IEA]; GO:0033295 - hydroxyectoine binding [Evidence IEA]
GO:0051470 - ectoine transport [Evidence IEA]; GO:0033308 - hydroxyectoine transport [Evidence IEA]
ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB
COORDINATES: similar to AA sequence:RefSeq:WP_020009906.1
GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]
ectoine/hydroxyectoine ABC transporter permease subunit EhuC
COORDINATES: similar to AA sequence:RefSeq:WP_004431448.1
ectoine/hydroxyectoine ABC transporter permease subunit EhuD
COORDINATES: similar to AA sequence:RefSeq:WP_010875189.1
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]
ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: similar to AA sequence:RefSeq:WP_013896445.1
COORDINATES: similar to AA sequence:RefSeq:WP_007178125.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018431197.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019565882.1
COORDINATES: similar to AA sequence:RefSeq:WP_018183160.1
COORDINATES: similar to AA sequence:RefSeq:WP_018431194.1
COORDINATES: similar to AA sequence:RefSeq:WP_018183162.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009807898.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009807895.1
COORDINATES: similar to AA sequence:RefSeq:WP_011506350.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578707.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578708.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017360453.1
COORDINATES: similar to AA sequence:RefSeq:WP_013660769.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0019808 - polyamine binding [Evidence IEA]
GO:0015846 - polyamine transport [Evidence IEA]
spermidine/putrescine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009807886.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807885.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578713.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328998.1
GO:0019239 - deaminase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004124697.1
GO:0008718 - D-amino-acid dehydrogenase activity [Evidence IEA]; GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0055130 - D-alanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018480556.1
GO:0008784 - alanine racemase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012648981.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011876047.1
COORDINATES: similar to AA sequence:RefSeq:WP_013654285.1
COORDINATES: similar to AA sequence:RefSeq:WP_013928137.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611153.1
COORDINATES: similar to AA sequence:RefSeq:WP_007732320.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00504
glycine riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011876056.1
COORDINATES: protein motif:HMM:NF025878.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009807892.1
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_009807889.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_020500301.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650280.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427293.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006614391.1
COORDINATES: similar to AA sequence:RefSeq:WP_007799376.1