Frigidibacter mobilis strain cai42 plasmid pcai42C, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Frigidibacter.
Complete genome sequence of Defluviimonas alba cai42t isolated from an oilfield in Xinjiang
Submitted (10-SEP-2015) Peking University, Beier Street, Zhongguancun, Haidian District, Beijing, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP012664.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP de novo in SMRT Analysis v. 2.1\nGenome Coverage :: missing\nSequencing Technology :: Illumina Hiseq 2000; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 22:24:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,018\nCDSs (total) :: 4,962\nGenes (coding) :: 4,586\nCDSs (with protein) :: 4,586\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 376\nCDSs (without protein) :: 376\nPseudo Genes (ambiguous residues) :: 0 of 376\nPseudo Genes (frameshifted) :: 280 of 376\nPseudo Genes (incomplete) :: 118 of 376\nPseudo Genes (internal stop) :: 11 of 376\nPseudo Genes (multiple problems) :: 30 of 376\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF015038.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01727.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611444.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009504355.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009504353.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820036.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009504349.1
COORDINATES: similar to AA sequence:RefSeq:WP_006174421.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016844266.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007396167.1
COORDINATES: similar to AA sequence:RefSeq:WP_011510447.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018273520.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_007673474.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612399.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009803477.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009819964.1
biotin carboxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009803479.1
GO:0003824 - catalytic activity [Evidence IEA]
crotonase/enoyl-CoA hydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819966.1
carboxyl transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009803481.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014994408.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011910859.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819736.1
COORDINATES: similar to AA sequence:RefSeq:WP_009573266.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014876578.1
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_020041673.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011331263.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804006.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503869.1
COORDINATES: similar to AA sequence:RefSeq:WP_011632084.1
CRISPR-associated helicase/endonuclease Cas3
COORDINATES: protein motif:HMM:TIGR02547.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-E CRISPR-associated protein Cse1/CasA
COORDINATES: protein motif:HMM:TIGR02548.1
type I-E CRISPR-associated protein Cse2/CasB
COORDINATES: similar to AA sequence:RefSeq:WP_011632081.1
type I-E CRISPR-associated protein Cas7/Cse4/CasC
COORDINATES: protein motif:HMM:TIGR01868.1
type I-E CRISPR-associated protein Cas5/CasD
COORDINATES: similar to AA sequence:RefSeq:WP_018000524.1
type I-E CRISPR-associated protein Cas6/Cse3/CasE
COORDINATES: similar to AA sequence:RefSeq:WP_018000523.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0051607 - defense response to virus [Evidence IEA]; GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-E CRISPR-associated endonuclease Cas1e
COORDINATES: similar to AA sequence:RefSeq:WP_014812300.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
type I-E CRISPR-associated endoribonuclease Cas2e
COORDINATES: similar to AA sequence:RefSeq:WP_018001791.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009465831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_014188732.1
COORDINATES: similar to AA sequence:RefSeq:WP_012061712.1
COORDINATES: similar to AA sequence:RefSeq:WP_008491906.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611389.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009504564.1
phenylacetate--CoA ligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009504563.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009803586.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819995.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819996.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819997.1
COORDINATES: similar to AA sequence:RefSeq:WP_011582270.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819999.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017148819.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820001.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820002.1
COORDINATES: similar to AA sequence:RefSeq:WP_009803595.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747348.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612142.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889625.1
COORDINATES: similar to AA sequence:RefSeq:WP_019583407.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006026301.1
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011970463.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048260.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_008030592.1
COORDINATES: similar to AA sequence:RefSeq:WP_019198976.1
COORDINATES: similar to AA sequence:RefSeq:WP_007676901.1
COORDINATES: similar to AA sequence:RefSeq:WP_002722635.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008030612.1
COORDINATES: similar to AA sequence:RefSeq:WP_009177476.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030617.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008030619.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008030621.1
COORDINATES: similar to AA sequence:RefSeq:WP_005413716.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0046914 - transition metal ion binding [Evidence IEA]
manganese-binding transcriptional regulator MntR
COORDINATES: similar to AA sequence:RefSeq:WP_013215306.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030624.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030626.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384122.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030629.1
COORDINATES: similar to AA sequence:RefSeq:WP_011583176.1
COORDINATES: similar to AA sequence:RefSeq:WP_011583202.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008030634.1
COORDINATES: similar to AA sequence:RefSeq:WP_017502524.1
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008030637.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755301.1
COORDINATES: similar to AA sequence:RefSeq:WP_007674982.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612068.1
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007803318.1
COORDINATES: similar to AA sequence:RefSeq:WP_010141882.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_018065933.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010141884.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010398610.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398612.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006937338.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001746.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121331.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956940.1
COORDINATES: similar to AA sequence:RefSeq:WP_007203965.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007817281.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820206.1
COORDINATES: similar to AA sequence:RefSeq:WP_007117802.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007120830.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175342.1
COORDINATES: similar to AA sequence:RefSeq:WP_009507333.1
COORDINATES: similar to AA sequence:RefSeq:WP_007092483.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013650730.1
COORDINATES: similar to AA sequence:RefSeq:WP_013650731.1
COORDINATES: similar to AA sequence:RefSeq:WP_010322184.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_014899267.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011970376.1
COORDINATES: similar to AA sequence:RefSeq:WP_018273731.1
COORDINATES: similar to AA sequence:RefSeq:WP_013722113.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009800286.1
COORDINATES: similar to AA sequence:RefSeq:WP_003601684.1
COORDINATES: similar to AA sequence:RefSeq:WP_011502706.1
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611562.1
COORDINATES: similar to AA sequence:RefSeq:WP_014440111.1
COORDINATES: similar to AA sequence:RefSeq:WP_012496884.1
COORDINATES: similar to AA sequence:RefSeq:WP_008134766.1
COORDINATES: protein motif:HMM:NF024732.2
acetyl-CoA hydrolase/transferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013653250.1
COORDINATES: similar to AA sequence:RefSeq:WP_007771600.1
COORDINATES: similar to AA sequence:RefSeq:WP_013504384.1
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_010683953.1
COORDINATES: protein motif:HMM:NF037995.1
TRAP transporter substrate-binding protein DctP
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_009504583.1
MaoC family dehydratase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009505953.1
COORDINATES: similar to AA sequence:RefSeq:WP_018271138.1
COORDINATES: similar to AA sequence:RefSeq:WP_012355439.1