Frigidibacter mobilis strain cai42 plasmid pcai42B, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Frigidibacter.
Complete genome sequence of Defluviimonas alba cai42t isolated from an oilfield in Xinjiang
Submitted (10-SEP-2015) Peking University, Beier Street, Zhongguancun, Haidian District, Beijing, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP012663.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP de novo in SMRT Analysis v. 2.1\nGenome Coverage :: missing\nSequencing Technology :: Illumina Hiseq 2000; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 22:24:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,018\nCDSs (total) :: 4,962\nGenes (coding) :: 4,586\nCDSs (with protein) :: 4,586\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 376\nCDSs (without protein) :: 376\nPseudo Genes (ambiguous residues) :: 0 of 376\nPseudo Genes (frameshifted) :: 280 of 376\nPseudo Genes (incomplete) :: 118 of 376\nPseudo Genes (internal stop) :: 11 of 376\nPseudo Genes (multiple problems) :: 30 of 376\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF014581.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretory system conjugative DNA transfer family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006966993.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_006966991.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF019575.2
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018240730.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_076611339.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011997539.1
IS1380-like element ISPme1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_019751310.1
COORDINATES: similar to AA sequence:RefSeq:WP_011996094.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015282242.1
COORDINATES: similar to AA sequence:RefSeq:WP_020561573.1
COORDINATES: similar to AA sequence:RefSeq:WP_015472921.1
COORDINATES: protein motif:HMM:NF021637.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018082385.1
COORDINATES: similar to AA sequence:RefSeq:WP_005766168.1
COORDINATES: similar to AA sequence:RefSeq:WP_006958303.1