Frigidibacter mobilis strain cai42 plasmid pcai42A, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Frigidibacter.
Complete genome sequence of Defluviimonas alba cai42t isolated from an oilfield in Xinjiang
Submitted (10-SEP-2015) Peking University, Beier Street, Zhongguancun, Haidian District, Beijing, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP012662.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP de novo in SMRT Analysis v. 2.1\nGenome Coverage :: missing\nSequencing Technology :: Illumina Hiseq 2000; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 22:24:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,018\nCDSs (total) :: 4,962\nGenes (coding) :: 4,586\nCDSs (with protein) :: 4,586\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 376\nCDSs (without protein) :: 376\nPseudo Genes (ambiguous residues) :: 0 of 376\nPseudo Genes (frameshifted) :: 280 of 376\nPseudo Genes (incomplete) :: 118 of 376\nPseudo Genes (internal stop) :: 11 of 376\nPseudo Genes (multiple problems) :: 30 of 376\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010139194.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009574160.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_008336084.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574167.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574168.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065937.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_007791678.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012606245.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013540.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018065934.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007803321.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008336066.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_007803318.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574175.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574176.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803314.1
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013704.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009574187.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007803302.1
COORDINATES: similar to AA sequence:RefSeq:WP_008336055.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574191.1
strawberry notch C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007791804.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840746.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010408889.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_018065919.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820102.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065917.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007803284.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007803282.1
COORDINATES: similar to AA sequence:RefSeq:WP_020038226.1
COORDINATES: similar to AA sequence:RefSeq:WP_009450564.1
antitoxin of toxin-antitoxin stability system
COORDINATES: similar to AA sequence:RefSeq:WP_009820093.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859714.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065909.1
COORDINATES: protein motif:HMM:NF014898.2
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012561958.1
COORDINATES: similar to AA sequence:RefSeq:WP_008033018.1
COORDINATES: protein motif:HMM:NF013460.2
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: protein motif:HMM:NF027890.2
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011749563.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749562.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803272.1
COORDINATES: similar to AA sequence:RefSeq:WP_010138202.1
COORDINATES: similar to AA sequence:RefSeq:WP_015740143.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827208.1
COORDINATES: similar to AA sequence:RefSeq:WP_010683362.1
COORDINATES: similar to AA sequence:RefSeq:WP_020208903.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611562.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005859736.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398665.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827215.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574206.1
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF023228.2
COORDINATES: protein motif:HMM:NF015393.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005617061.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574209.1
COORDINATES: similar to AA sequence:RefSeq:WP_010138187.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574211.1
COORDINATES: similar to AA sequence:RefSeq:WP_009574212.1
COORDINATES: similar to AA sequence:RefSeq:WP_009563492.1
COORDINATES: similar to AA sequence:RefSeq:WP_011474274.1
COORDINATES: similar to AA sequence:RefSeq:WP_008336115.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001728.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008336095.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008336094.1
COORDINATES: similar to AA sequence:RefSeq:WP_010138156.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859617.1
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: similar to AA sequence:RefSeq:WP_008327373.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_005859622.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859623.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859624.1
COORDINATES: similar to AA sequence:RefSeq:WP_010139195.1