Streptococcus dysgalactiae strain FDAARGOS_1157 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (11-JAN-2021) Institute for Genome Sciences, University of Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite 619, Baltimore, MD 21201, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP068058.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 8.0.0, HGAP v. 4, SPAdes v. 3.11.1\nGenome Coverage :: 2001.91x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/09/2023 13:12:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,169\nCDSs (total) :: 2,080\nGenes (coding) :: 1,974\nCDSs (with protein) :: 1,974\nGenes (RNA) :: 89\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 106\nCDSs (without protein) :: 106\nPseudo Genes (ambiguous residues) :: 0 of 106\nPseudo Genes (frameshifted) :: 52 of 106\nPseudo Genes (incomplete) :: 48 of 106\nPseudo Genes (internal stop) :: 48 of 106\nPseudo Genes (multiple problems) :: 32 of 106\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Streptococcus dysgalactiae
COORDINATES: similar to AA sequence:RefSeq:WP_012514790.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010889904.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889903.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
plasmid copy number transcriptional regulator CopA
COORDINATES: similar to AA sequence:RefSeq:WP_000120771.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_000428054.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_000791562.1
COORDINATES: similar to AA sequence:RefSeq:WP_017649590.1
COORDINATES: similar to AA sequence:RefSeq:WP_000660642.1
COORDINATES: protein motif:HMM:NF016876.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.