Streptococcus canis strain HL_77_2 plasmid pSC77-2, complete sequence.
type: Entry
definition: Streptococcus canis strain HL_77_2 plasmid pSC77-2, complete sequence.
sequence version: NZ_CP053791.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP053791.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN13091860
keyword: RefSeq
source: Streptococcus canis
organism: Streptococcus canis
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.
reference: 1
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP053791.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1222.8x\nSequencing Technology :: Illumina; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 02:24:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,109\nCDSs (total) :: 2,020\nGenes (coding) :: 1,926\nCDSs (with protein) :: 1,926\nGenes (RNA) :: 89\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 94\nCDSs (without protein) :: 94\nPseudo Genes (ambiguous residues) :: 0 of 94\nPseudo Genes (frameshifted) :: 54 of 94\nPseudo Genes (incomplete) :: 44 of 94\nPseudo Genes (internal stop) :: 51 of 94\nPseudo Genes (multiple problems) :: 44 of 94\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5489
topology: circular
so has quality: SO_0000988
location: 1..5489
location: region:1-5489:1
RO_0002162: 1329

NZ_CP053791
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN13091860
type: BioSample
SIO_000068: biosample

1
title: Whole Genome Sequences of Streptococcus canis Strains Isolated from Dogs in Korea
author: Kim, J.-S.
author: Sakaguchi, S.
author: Yoshida, H.
author: Fukushima, Y.
author: Nakano, T.
author: Takahashi, T.
journal: Unpublished

2
title: Direct Submission
author: Kim, J.-S.
author: Sakaguchi, S.
author: Yoshida, H.
author: Fukushima, Y.
author: Nakano, T.
author: Takahashi, T.
journal: Submitted (13-MAY-2020) Laboratory Medicine, Hallym University College of Medicine, Kangdong Sacred Heart Hospital, 150 Seongan-ro, Songpa-gu, Seoul 05355, South Korea

3
title: Direct Submission
author: Kim, J.-S.
journal: Submitted (24-OCT-2019) Laboratory Medicine, Hallym University College of Medicine, Kangdong Sacred Heart Hospital, 150 Seongan-ro, Songpa-gu, Seoul 05355, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5489:1
position: 5489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5489:1:source
so part of: sequence
organism: Streptococcus canis
mol type: genomic DNA
strain: HL_77_2
host: dog
plasmid: pSC77-2
country: South Korea: Seoul
collection date: 2018-08-01

1329
type: Taxonomy
SIO_000068: taxonomy

GE022_RS10475
type: Gene
subclass of: SO_0000704
RO_0002162: 1329
locus tag: GE022_RS10475
old locus tag: GE022_010465
so part of: sequence
location: 457..1782
location: region:457-1782:1
so has part: feature:457-1782:1:exon
subclass of: SO_0000010

66917985
type: Gene
SIO_000068: ncbigene

position:457:1
position: 457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1782:1
position: 1782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:457-1782:1:exon

GE022_RS10475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1329
locus tag: GE022_RS10475
old locus tag: GE022_010465
inference: COORDINATES: protein motif:HMM:NF013258.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid recombination protein
translation: MEISISFSTKTSMTNLAHNNRELTDEEFKQEAHKHIDRELTKDNIIIKQEDIHDVYEREFGSALQEYNTKQKRADRKIKDYYQHVGRSKTLDRQREFVVGLGTKEDWDNLSREKKIEAGEKLADYVREFEIRHPQLKLYNAIVHLDEKGAPHVHFNVVPVAEGYKNGLKRQPSFSKALSQEGISSKGKFQFQDFRNAELAILETKLNELGMERKLVGTNDIKDMHKYKEIVSKAEEEIAKIDFKATEKLSELSQVESNIKDRSNVLKALEGKIRAYEEELKVGREFSNGWRTKFSGELKKTAFGKEYIRLDPKVYENARMSFVWQENTFQKYEEKISDIRRQLGREREARFAVIEERNDLREQVTDLKTRNKWLEGQNQGLYDRLDLTSKKLAIWRHEAKKLMSVKEFKDLTKYLNQFMPLKPVIEAVKVVKKVMEKGLSL
SIO_010081: GE022_RS10475
subclass of: SO_0000673
so part of: GE022_RS10475
location: 457..1782
location: region:457-1782:1
so has part: feature:457-1782:1:exon

WP_164405788.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:457-1782:1:exon

GE022_RS10480
type: Gene
subclass of: SO_0000704
RO_0002162: 1329
locus tag: GE022_RS10480
old locus tag: GE022_010470
so part of: sequence
location: 1998..2246
location: region:1998-2246:1
so has part: feature:1998-2246:1:exon
subclass of: SO_0000010

66917986
type: Gene
SIO_000068: ncbigene

position:1998:1
position: 1998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2246:1
position: 2246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1998-2246:1:exon

GE022_RS10480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1329
locus tag: GE022_RS10480
old locus tag: GE022_010470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000428054.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system Phd/YefM family antitoxin
translation: MENIVPVSDMRYYNQTLSDVSVGSQVILTRNGKAEYAVVDIEEWRRTKATLRLFKELQKGYRSLANEKTYTPDELAERLGVE
SIO_010081: GE022_RS10480
subclass of: SO_0000673
so part of: GE022_RS10480
location: 1998..2246
location: region:1998-2246:1
so has part: feature:1998-2246:1:exon

WP_164405789.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1998-2246:1:exon

GE022_RS10485
type: Gene
subclass of: SO_0000704
RO_0002162: 1329
locus tag: GE022_RS10485
old locus tag: GE022_010475
so part of: sequence
location: 2246..2563
location: region:2246-2563:1
so has part: feature:2246-2563:1:exon
subclass of: SO_0000010

66917987
type: Gene
SIO_000068: ncbigene

position:2563:1
position: 2563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2246-2563:1:exon

GE022_RS10485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1329
locus tag: GE022_RS10485
old locus tag: GE022_010475
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000120771.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MVYSVITSSETVRDIDDAVFYKEGLGMYPENILKFKQNVVDVIRKLADSPKTGANLSARVDEPTNVKYSVIDDYILFYEIDDDVVKVLRLLPAKSNWMNTILKYL
SIO_010081: GE022_RS10485
subclass of: SO_0000673
so part of: GE022_RS10485
location: 2246..2563
location: region:2246-2563:1
so has part: feature:2246-2563:1:exon

WP_164405790.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2246-2563:1:exon

GE022_RS10490
type: Gene
subclass of: SO_0000704
RO_0002162: 1329
locus tag: GE022_RS10490
old locus tag: GE022_010480
so part of: sequence
location: 2879..3844
location: region:2879-3844:1
so has part: feature:2879-3844:1:exon
subclass of: SO_0000010

66917988
type: Gene
SIO_000068: ncbigene

position:2879:1
position: 2879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3844:1
position: 3844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2879-3844:1:exon

GE022_RS10490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1329
locus tag: GE022_RS10490
old locus tag: GE022_010480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017649591.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein rep
translation: MTGNENQVFRDYSKQGKDRKWRERKLKNIELAGCLERLGYRSFERVYQCAEVLKFIEQQDGTRKLYQSYFCKNKLCPICNWRRSMKYAYQAELVVNEAMKRYPKGRFLFLTLTIKNVSGKELNKSISEMGRAFNRLFKYKKVDKNVIGYLRATEVTYSSEHENYHPHLHILLMVKPNYFSGRGDNYLTQEEWTRLWAKAMKLDYTPMVDIRTVKAHKRKKLKSAIIETAKYPVKPFDVDTEEVTLFTEMDKERITEDLTNGLYRKRQIGFGKLFKEIKAELELDDVEEGNLVQTGAEETAESGGREIVAFWNWDRKNYFVR
SIO_010081: GE022_RS10490
subclass of: SO_0000673
so part of: GE022_RS10490
location: 2879..3844
location: region:2879-3844:1
so has part: feature:2879-3844:1:exon

WP_164405791.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2879-3844:1:exon

GE022_RS10495
type: Gene
subclass of: SO_0000704
RO_0002162: 1329
locus tag: GE022_RS10495
old locus tag: GE022_010485
so part of: sequence
location: 3849..4064
location: region:3849-4064:1
so has part: feature:3849-4064:1:exon
subclass of: SO_0000010

66917989
type: Gene
SIO_000068: ncbigene

position:3849:1
position: 3849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4064:1
position: 4064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3849-4064:1:exon

GE022_RS10495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1329
locus tag: GE022_RS10495
old locus tag: GE022_010485
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVKKFFKEFYQKVSKLSFLKYFVAWWASMSLLKMLLLSLNLENHLIYSFLAFLGSLVISGILVWFDEKWKK
SIO_010081: GE022_RS10495
subclass of: SO_0000673
so part of: GE022_RS10495
location: 3849..4064
location: region:3849-4064:1
so has part: feature:3849-4064:1:exon

WP_164405792.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3849-4064:1:exon

GE022_RS10500
type: Gene
subclass of: SO_0000704
RO_0002162: 1329
locus tag: GE022_RS10500
old locus tag: GE022_010490
so part of: sequence
location: 4077..4622
location: region:4077-4622:1
so has part: feature:4077-4622:1:exon
subclass of: SO_0000010

66917990
type: Gene
SIO_000068: ncbigene

position:4077:1
position: 4077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4622:1
position: 4622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4077-4622:1:exon

GE022_RS10500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1329
locus tag: GE022_RS10500
old locus tag: GE022_010490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKTVKEIAEEIGVSKTAIRNKMTEEFRSKYVQTSTENQPQTLLITEEGVNLLKSMFQGGNQTANLSANQAQTQVVGIEFYERQIESLQKLLDQSQQLLLNEQKKNQLLLETKTELADWKKEKTELEKEVSTYRNSLSEANRRASNNYNYAENVERLLWIAGIIAGIFFVIILVLIWIHFF
SIO_010081: GE022_RS10500
subclass of: SO_0000673
so part of: GE022_RS10500
location: 4077..4622
location: region:4077-4622:1
so has part: feature:4077-4622:1:exon

WP_164405793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4077-4622:1:exon

GE022_RS10505
type: Gene
subclass of: SO_0000704
RO_0002162: 1329
locus tag: GE022_RS10505
old locus tag: GE022_010495
so part of: sequence
location: 5038..5481
location: region:5038-5481:1
so has part: feature:5038-5481:1:exon
subclass of: SO_0000010

66917991
type: Gene
SIO_000068: ncbigene

position:5038:1
position: 5038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5481:1
position: 5481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5038-5481:1:exon

GE022_RS10505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1329
locus tag: GE022_RS10505
old locus tag: GE022_010495
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNLKKYIISSMLILSISSVLVPSFVTVRVWANETTNIDVPLNIQDSGYITGYLGENGYVEFYNHQGQERNGTLVKIAVHIGKAIIGYIEGLVVDGIVQSATGKSGEEWVQTAIKNAVGRKYTGSVTIPASGPYTCPGVVIDHSGICN
SIO_010081: GE022_RS10505
subclass of: SO_0000673
so part of: GE022_RS10505
location: 5038..5481
location: region:5038-5481:1
so has part: feature:5038-5481:1:exon

WP_164405787.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5038-5481:1:exon