Vibrio cortegadensis strain CECT 7227 plasmid p2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Vibrio Clade 3.0: New Vibrionaceae Evolutionary Units Using Genome-Based Approach
DOI:10.1007/s00284-021-02725-0 Publication Status: Online-Only
Submitted (05-JAN-2022) Contact:Tomoo Sawabe Hokkaido University, Faculty of Fisheries Sciences; 3-1-1 Minato-cho, Hakodate, Hokkaido 041-8611, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP025475.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Coverage :: 208x\nSequencing Technology :: Illumina MiSeq; Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/29/2022 11:03:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,217\nCDSs (total) :: 4,057\nGenes (coding) :: 4,004\nCDSs (with protein) :: 4,004\nGenes (RNA) :: 160\nrRNAs :: 15, 14, 14 (5S, 16S, 23S)\ncomplete rRNAs :: 15, 14, 14 (5S, 16S, 23S)\ntRNAs :: 113\nncRNAs :: 4\nPseudo Genes (total) :: 53\nCDSs (without protein) :: 53\nPseudo Genes (ambiguous residues) :: 0 of 53\nPseudo Genes (frameshifted) :: 19 of 53\nPseudo Genes (incomplete) :: 39 of 53\nPseudo Genes (internal stop) :: 8 of 53\nPseudo Genes (multiple problems) :: 10 of 53\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF027776.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018472.2
COORDINATES: protein motif:HMM:NF025225.2
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF015802.2
COORDINATES: protein motif:HMM:NF013506.2
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016991.2
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014846.2
COORDINATES: protein motif:HMM:NF017673.2
phage terminase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010430969.1
COORDINATES: similar to AA sequence:RefSeq:WP_005424586.1
COORDINATES: protein motif:HMM:NF022284.2
COORDINATES: similar to AA sequence:RefSeq:WP_016786041.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786039.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001266128.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005593087.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000471965.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016281.2
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008986132.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786024.1
GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: similar to AA sequence:RefSeq:WP_008986136.1
COORDINATES: similar to AA sequence:RefSeq:WP_005424581.1
COORDINATES: similar to AA sequence:RefSeq:WP_013051572.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008986148.1
COORDINATES: protein motif:HMM:NF027406.2
COORDINATES: similar to AA sequence:RefSeq:WP_005424555.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786047.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786048.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786050.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786055.1
COORDINATES: similar to AA sequence:RefSeq:WP_005424537.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786057.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786058.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786059.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786060.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786061.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786062.1
COORDINATES: protein motif:HMM:NF012863.2
COORDINATES: similar to AA sequence:RefSeq:WP_005376972.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786065.1
COORDINATES: similar to AA sequence:RefSeq:WP_005376974.1
host specificity factor TipJ family phage tail protein
COORDINATES: similar to AA sequence:RefSeq:WP_005424042.1
COORDINATES: similar to AA sequence:RefSeq:WP_009844423.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786069.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009844422.1
COORDINATES: protein motif:HMM:NF040300.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786072.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_016786073.1