Melopsittacus undulatus isolate bMelUnd1 chromosome 26, bMelUnd1.mat.Z, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittaculidae; Melopsittacus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM022657.1.\nAssembly name: bMelUnd1.mat.Z\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the G10K on 2020/04/13. The\noriginal whole-genome shotgun project has the accession\nJAAVWG000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: G10K\nAssembly Date :: 24-FEB-2020\nAssembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; Bionano solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow\n polishing and gap filling v.\n smrtlink_6.0.0.47841; Longranger Align v.\n 2.2.2; Freebayes v. 1.3.1; gEVAL manual\n curation v. 2020-02-24; VGP assembly\n pipeline v. 1.6\nAssembly Name :: bMelUnd1.mat.Z\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 61.11x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Melopsittacus undulatus Annotation\n Release 104\nAnnotation Version :: 104\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.4\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 96% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 80% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
kallikrein-13-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
kallikrein-13-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
kallikrein-13-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
kallikrein-13-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
glandular kallikrein-3, submandibular-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 84% coverage of the annotated genomic feature by RNAseq alignments
transmembrane immune signaling adaptor TYROBP
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
TYRO protein tyrosine kinase-binding protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
lin-37 DREAM MuvB core complex component
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
persulfide dioxygenase ETHE1, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93% coverage of the annotated genomic feature by RNAseq alignments
sushi, nidogen and EGF-like domain-containing protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
FXYD domain containing ion transport regulator 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
FXYD domain-containing ion transport regulator 3
leucine-rich glioma-inactivated protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
sodium voltage-gated channel beta subunit 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
proteasome 26S subunit, ATPase 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
proteasome 26S subunit, ATPase 4, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
26S proteasome regulatory subunit 6B isoform X2
26S proteasome regulatory subunit 6B isoform X1
proteasome 26S subunit, ATPase 4, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
proteasome 26S subunit, ATPase 4, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
26S proteasome regulatory subunit 6B isoform X5
26S proteasome regulatory subunit 6B isoform X3
proteasome 26S subunit, ATPase 4, transcript variant X6
proteasome 26S subunit, ATPase 4, transcript variant X4
26S proteasome regulatory subunit 6B isoform X6
26S proteasome regulatory subunit 6B isoform X4
presenilin enhancer, gamma-secretase subunit
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 95% coverage of the annotated genomic feature by RNAseq alignments
histone-lysine N-methyltransferase 2B-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 84% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
ETS domain-containing transcription factor ERF-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
ATPase Na+/K+ transporting subunit alpha 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 14 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
sodium/potassium-transporting ATPase subunit alpha-3
glutamate ionotropic receptor kainate type subunit 5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 94 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
glutamate receptor ionotropic, kainate 5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
POU domain, class 2, transcription factor 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 27% coverage of the annotated genomic feature by RNAseq alignments
potassium-transporting ATPase alpha chain 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments
lipolysis-stimulated lipoprotein receptor-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
upstream transcription factor 2, c-fos interacting
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
electron transfer flavoprotein subunit beta
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
protein phosphatase 2 scaffold subunit Aalpha
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 105 ESTs, 13 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform
SMG9 nonsense mediated mRNA decay factor
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X12
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X7
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X15
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X9
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X2
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X13
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X3
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X18
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X8
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X20
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X14
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X21
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X16
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X11
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X6
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X19
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X24
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X5
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X22
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X1
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X17
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X23
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X4
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X10
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X7
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X15
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X9
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X2
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X13
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X3
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X18
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X8
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X20
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X14
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X21
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X16
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X11
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X6
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X19
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X24
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X5
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X22
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X1
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X17
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X12
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X23
Rho guanine nucleotide exchange factor 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments