Melopsittacus undulatus isolate bMelUnd1 chromosome 24, bMelUnd1.mat.Z, whole genome shotgun sequence.
type: Entry
definition: Melopsittacus undulatus isolate bMelUnd1 chromosome 24, bMelUnd1.mat.Z, whole genome shotgun sequence.
sequence version: NC_047550.1
sequence date: 2020-05-06
sequence: sequence
division: CON
label: NC_047550.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA629576
dblink: SAMN12623090
keyword: WGS
keyword: RefSeq
source: Melopsittacus undulatus (budgerigar)
organism: Melopsittacus undulatus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittaculidae; Melopsittacus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM022655.1.\nAssembly name: bMelUnd1.mat.Z\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the G10K on 2020/04/13. The\noriginal whole-genome shotgun project has the accession\nJAAVWG000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: G10K\nAssembly Date :: 24-FEB-2020\nAssembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; Bionano solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow\n polishing and gap filling v.\n smrtlink_6.0.0.47841; Longranger Align v.\n 2.2.2; Freebayes v. 1.3.1; gEVAL manual\n curation v. 2020-02-24; VGP assembly\n pipeline v. 1.6\nAssembly Name :: bMelUnd1.mat.Z\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 61.11x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Melopsittacus undulatus Annotation\n Release 104\nAnnotation Version :: 104\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.4\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 1018390
topology: linear
so has quality: SO_0000987
location: 1..1018390
location: region:1-1018390:1
RO_0002162: 13146

NC_047550
type: RefSeq
SIO_000068: refseq

PRJNA629576
type: BioProject
SIO_000068: bioproject

SAMN12623090
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1018390:1
position: 1018390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-1018390:1:source
so part of: sequence
organism: Melopsittacus undulatus
mol type: genomic DNA
isolate: bMelUnd1
chromosome: 24
sex: female
tissue type: blood
dev stage: juvenile
country: USA: New Mexico State University
lat lon: 32.278282 N 106.74994 W
collection date: 02-Nov-2018
collected by: Timothy Wright, Justin Apodaca

13146
type: Taxonomy
SIO_000068: taxonomy

LOC115947366
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC115947366
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2124..2276)
location: region:2124-2276:-1
so has part: feature:2124-2276:-1:exon
subclass of: SO_0000573

115947366
type: Gene
SIO_000068: ncbigene

position:2124:-1
position: 2124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2276:-1
position: 2276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2124-2276:-1:exon

LOC115947366
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 13146
gene: LOC115947366
product: 5.8S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00002
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004081295.2
SIO_010081: LOC115947366
subclass of: SO_0000673
so part of: LOC115947366
location: complement(2124..2276)
location: region:2124-2276:-1
so has part: feature:2124-2276:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2124-2276:-1:exon

LOC117437659
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437659
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(4620..6450)
location: region:4620-6450:-1
so has part: feature:4620-6450:-1:exon
subclass of: SO_0000573

117437659
type: Gene
SIO_000068: ncbigene

position:4620:-1
position: 4620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6450:-1
position: 6450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4620-6450:-1:exon

LOC117437659
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 13146
gene: LOC117437659
product: 18S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF01960
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004550485.1
SIO_010081: LOC117437659
subclass of: SO_0000673
so part of: LOC117437659
location: complement(4620..6450)
location: region:4620-6450:-1
so has part: feature:4620-6450:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4620-6450:-1:exon

LOC117437653
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437653
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 25421..33677
location: region:25421-33677:1
so has part: feature:25421-33677:1:exon
subclass of: SO_0000010

117437653
type: Gene
SIO_000068: ncbigene

position:25421:1
position: 25421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33677:1
position: 33677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25421-33677:1:exon

LOC117437653
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437653
product: DNA polymerase iota-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072194.1
SIO_010081: LOC117437653
subclass of: SO_0000673
so part of: LOC117437653
location: join(25421..25467,26045..26164,26284..26448,27685..27837,28425..28661,28911..29089,29241..29332,29547..29680,30116..30321,31202..31971,32261..32347,33320..33677)
location: region:25421-33677:1
so has part: feature:25421-25467:1:exon
so has part: feature:26045-26164:1:exon
so has part: feature:26284-26448:1:exon
so has part: feature:27685-27837:1:exon
so has part: feature:28425-28661:1:exon
so has part: feature:28911-29089:1:exon
so has part: feature:29241-29332:1:exon
so has part: feature:29547-29680:1:exon
so has part: feature:30116-30321:1:exon
so has part: feature:31202-31971:1:exon
so has part: feature:32261-32347:1:exon
so has part: feature:33320-33677:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25421-25467:1:exon

position:25467:1
position: 25467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:26045-26164:1:exon

position:26045:1
position: 26045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26164:1
position: 26164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:26284-26448:1:exon

position:26284:1
position: 26284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26448:1
position: 26448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:27685-27837:1:exon

position:27685:1
position: 27685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27837:1
position: 27837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:28425-28661:1:exon

position:28425:1
position: 28425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28661:1
position: 28661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:28911-29089:1:exon

position:28911:1
position: 28911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29089:1
position: 29089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:29241-29332:1:exon

position:29241:1
position: 29241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29332:1
position: 29332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:29547-29680:1:exon

position:29547:1
position: 29547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29680:1
position: 29680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:30116-30321:1:exon

position:30116:1
position: 30116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30321:1
position: 30321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:31202-31971:1:exon

position:31202:1
position: 31202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31971:1
position: 31971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:32261-32347:1:exon

position:32261:1
position: 32261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32347:1
position: 32347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:33320-33677:1:exon

position:33320:1
position: 33320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437653
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437653
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA polymerase iota-like
translation: MLRAPELRDKALGVQQKSLVVTCNYEARRHGVKKLMSLKEATEKCPHLVLVNGEDLTPYREMSYKVTELLREYCPLVERLGLDENFLDITDVVEQRIGCFHPSGWAGIRVSGHVYKDQAINVQDPTHRKLAIGSQVMEELRECLYSTLGLTSSAGVATTKFLAKLVSGTFKPNQQTLLLPHSTQELLRNLGSIRKVPGIGSRTAERLEALGVKTVVDLQRFPSAGLKKELGIALAQRIRKLGYGQDEAPVTPSGPPQSFSDEDSFQKCSSEAEVQEKLGTMLPSLLERIRRDGRQPRTIRLSIRRFSSSGKGFHRECRQCPIPPHLLPKFGKDPGSLLSPLGSILMKLLRKMIPTELPFHLTLLNVCFSNLQELPTRKGSIGFYLKGKGPAPASGQGGSGKEAADSQGKGSASCSGIPNSRKLLEGEESPRRPGTIPSFPPIAQEVLPEALKQELPSQLEFQAGNVPAQPSLPFPKEIPNPSQNPMGLSSAVRPAGCTNPVGATQAFEYPSRTGVRMEKEPPEAGIILTGSCASSWDKEAPAAASMEQTHCKDVVIPPDVDKETFYELPVDVQRELLAQWKSGSQRTDKPLGKLKARKRRRMEVPCGSNSLWRYLKPREEGFGRREAALGSALHLEWGGSKEDAPTPAIPFPKRP
SIO_010081: LOC117437653
subclass of: SO_0000673
so part of: LOC117437653
location: join(26128..26164,26284..26448,27685..27837,28425..28661,28911..29089,29241..29332,29547..29680,30116..30321,31202..31966)
location: region:26128-31966:1
so has part: feature:26128-26164:1:exon
so has part: feature:26284-26448:1:exon
so has part: feature:27685-27837:1:exon
so has part: feature:28425-28661:1:exon
so has part: feature:28911-29089:1:exon
so has part: feature:29241-29332:1:exon
so has part: feature:29547-29680:1:exon
so has part: feature:30116-30321:1:exon
so has part: feature:31202-31966:1:exon

XP_033928085.1
type: Protein
SIO_000068: ncbiprotein

position:26128:1
position: 26128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31966:1
position: 31966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26128-26164:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:26284-26448:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:27685-27837:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:28425-28661:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:28911-29089:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:29241-29332:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:29547-29680:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:30116-30321:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:31202-31966:1:exon

LOC117437595
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437595
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 62402..66480
location: region:62402-66480:1
so has part: feature:62402-66480:1:exon
subclass of: SO_0000010

117437595
type: Gene
SIO_000068: ncbigene

position:62402:1
position: 62402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66480:1
position: 66480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62402-66480:1:exon

LOC117437595
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437595
product: maestro heat-like repeat-containing protein family member 7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 87% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072105.1
SIO_010081: LOC117437595
subclass of: SO_0000673
so part of: LOC117437595
location: join(62402..62489,63245..63315,63408..63557,63694..63845,64415..64496,65270..65446,65541..65696,65791..65892,66007..66109,66196..66255,66332..66480)
location: region:62402-66480:1
so has part: feature:62402-62489:1:exon
so has part: feature:63245-63315:1:exon
so has part: feature:63408-63557:1:exon
so has part: feature:63694-63845:1:exon
so has part: feature:64415-64496:1:exon
so has part: feature:65270-65446:1:exon
so has part: feature:65541-65696:1:exon
so has part: feature:65791-65892:1:exon
so has part: feature:66007-66109:1:exon
so has part: feature:66196-66255:1:exon
so has part: feature:66332-66480:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:62402-62489:1:exon

position:62489:1
position: 62489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:63245-63315:1:exon

position:63245:1
position: 63245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63315:1
position: 63315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:63408-63557:1:exon

position:63408:1
position: 63408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63557:1
position: 63557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:63694-63845:1:exon

position:63694:1
position: 63694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63845:1
position: 63845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:64415-64496:1:exon

position:64415:1
position: 64415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64496:1
position: 64496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:65270-65446:1:exon

position:65270:1
position: 65270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65446:1
position: 65446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:65541-65696:1:exon

position:65541:1
position: 65541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65696:1
position: 65696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:65791-65892:1:exon

position:65791:1
position: 65791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65892:1
position: 65892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:66007-66109:1:exon

position:66007:1
position: 66007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66109:1
position: 66109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:66196-66255:1:exon

position:66196:1
position: 66196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66255:1
position: 66255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:66332-66480:1:exon

position:66332:1
position: 66332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437595
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: maestro heat-like repeat-containing protein family member 7
translation: MHHRERRKQKQVEERRLELDASPRVLTMKFAVLLFPRERMEMVCVLIEAMKDSSIFDRRVAENILELVLRDPDFWLLEIPSVVRSIHECLRNSSIEEMWRMDELITLMAIKYPRELIVTMVLNVPLRESSDLVMWDMVLSISEPIETLQELLGMIQARKLQQLLPHILGRLWDVTEKLQIKGLLILQNVMKHLSREEASPIAVGLVQDLRPFFDAGCERLRALSIRLVCFLLEMMLGCDWRRIRSKTWDLLLPVFFHLNDKSHSVVKASRKALLAVATLLGWEDLQHLLETKQMWRVMECLVKRSRKRMQACLHHSLQYLRDAQVPLREAAVRFIGLAARPLRGESSGTLEEICRALEMLMEEADPELRSLTAQTLLILRSTPEQQNLGCSLWALWCWERRSFP
SIO_010081: LOC117437595
subclass of: SO_0000673
so part of: LOC117437595
location: join(62477..62489,63245..63315,63408..63557,63694..63845,64415..64496,65270..65446,65541..65696,65791..65892,66007..66109,66196..66255,66332..66480)
location: region:62477-66480:1
so has part: feature:62477-62489:1:exon
so has part: feature:63245-63315:1:exon
so has part: feature:63408-63557:1:exon
so has part: feature:63694-63845:1:exon
so has part: feature:64415-64496:1:exon
so has part: feature:65270-65446:1:exon
so has part: feature:65541-65696:1:exon
so has part: feature:65791-65892:1:exon
so has part: feature:66007-66109:1:exon
so has part: feature:66196-66255:1:exon
so has part: feature:66332-66480:1:exon

XP_033927996.1
type: Protein
SIO_000068: ncbiprotein

position:62477:1
position: 62477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62477-62489:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:63245-63315:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:63408-63557:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:63694-63845:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:64415-64496:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:65270-65446:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:65541-65696:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:65791-65892:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:66007-66109:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:66196-66255:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:66332-66480:1:exon

LOC117437596
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437596
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(76848..83483)
location: region:76848-83483:-1
so has part: feature:76848-83483:-1:exon
subclass of: SO_0000010

117437596
type: Gene
SIO_000068: ncbigene

position:76848:-1
position: 76848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83483:-1
position: 83483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76848-83483:-1:exon

LOC117437596
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437596
product: uncharacterized LOC117437596
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 83% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072106.1
SIO_010081: LOC117437596
subclass of: SO_0000673
so part of: LOC117437596
location: complement(join(76848..77281,77358..77417,77504..77606,77722..77823,77913..78068,78163..78339,78824..78925,79036..79117,79706..79857,79994..80143,80237..80307,80873..81038,81483..81590,81791..81880,81977..82097,82180..82259,82620..82745,82996..83075,83339..83483))
location: region:76848-83483:-1
so has part: feature:83339-83483:-1:exon
so has part: feature:82996-83075:-1:exon
so has part: feature:82620-82745:-1:exon
so has part: feature:82180-82259:-1:exon
so has part: feature:81977-82097:-1:exon
so has part: feature:81791-81880:-1:exon
so has part: feature:81483-81590:-1:exon
so has part: feature:80873-81038:-1:exon
so has part: feature:80237-80307:-1:exon
so has part: feature:79994-80143:-1:exon
so has part: feature:79706-79857:-1:exon
so has part: feature:79036-79117:-1:exon
so has part: feature:78824-78925:-1:exon
so has part: feature:78163-78339:-1:exon
so has part: feature:77913-78068:-1:exon
so has part: feature:77722-77823:-1:exon
so has part: feature:77504-77606:-1:exon
so has part: feature:77358-77417:-1:exon
so has part: feature:76848-77281:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:83339-83483:-1:exon

position:83339:-1
position: 83339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:82996-83075:-1:exon

position:82996:-1
position: 82996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83075:-1
position: 83075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:82620-82745:-1:exon

position:82620:-1
position: 82620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82745:-1
position: 82745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:82180-82259:-1:exon

position:82180:-1
position: 82180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82259:-1
position: 82259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:81977-82097:-1:exon

position:81977:-1
position: 81977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82097:-1
position: 82097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:81791-81880:-1:exon

position:81791:-1
position: 81791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81880:-1
position: 81880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:81483-81590:-1:exon

position:81483:-1
position: 81483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81590:-1
position: 81590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:80873-81038:-1:exon

position:80873:-1
position: 80873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81038:-1
position: 81038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:80237-80307:-1:exon

position:80237:-1
position: 80237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80307:-1
position: 80307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:79994-80143:-1:exon

position:79994:-1
position: 79994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80143:-1
position: 80143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:79706-79857:-1:exon

position:79706:-1
position: 79706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79857:-1
position: 79857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:79036-79117:-1:exon

position:79036:-1
position: 79036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79117:-1
position: 79117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:78824-78925:-1:exon

position:78824:-1
position: 78824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78925:-1
position: 78925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:78163-78339:-1:exon

position:78163:-1
position: 78163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78339:-1
position: 78339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:77913-78068:-1:exon

position:77913:-1
position: 77913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78068:-1
position: 78068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:77722-77823:-1:exon

position:77722:-1
position: 77722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77823:-1
position: 77823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:77504-77606:-1:exon

position:77504:-1
position: 77504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77606:-1
position: 77606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:77358-77417:-1:exon

position:77358:-1
position: 77358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77417:-1
position: 77417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:76848-77281:-1:exon

position:77281:-1
position: 77281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437596
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437596
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC117437596
translation: MMETPPGAPRQAWESDEDSNGSTSSLEACEESPVLLLKPHASWLPVYELEQDKVDLIEAFDNTAAVSEQEKVEFLRSICLLLYTARRRGLKQGLDTFCKNNQLVQTIQAILQEQPVTEVHTDVWHLAMEAVVELSSVQPGLEDLGTSFAEICCMSIFFLPPEEEFSEVETFYYEHALEAMDGMLKSLVVNSADPEAGEELKSILQLLLCFSCNPSSTVRNRALGRIKALSRVLRLRHYTLKKPFLAQGSHFSRLDPEQLLGQLLGQFLLFRFSEDGTSNTALDVLRNIYKYLMHHRERRKQKQVEERRLELDASPRVLTMKFAVLLFPRERMEMVCVLIEAMKDSSIFDKRVAENILELVLRDPDFWLLEIPSVVRSIHECLRNSSIEEMWRMDELITLMAIKYPRELIVTMVLNVPLRESSDLVMWDMVLSISEPIETLQELLGMIEPRASDAGGAEGPQGVVTVATLMEKLLRLSKECRLARKLQQLLPHILGRLWDVTEKLQIKGLLILQNVMKHLSREEASPIAVGLVQDLRPFFDAGCERLRALSIRLVCFLLEMMLGCDWRRIRSKTWDLLLPVFFHLNDKSHSVVKASRKALFAVATLLGWEDLQHLLETKQMWRVMECLVKRSRKRMQACLHHSLQYLRDAQVPLREAAVRFIGLAARPLRGESSGTLEEICRALEVLMEEADPELRSLTAQTLLILRSTPEQQSLGCSLWALWCWERRSFP
SIO_010081: LOC117437596
subclass of: SO_0000673
so part of: LOC117437596
location: complement(join(77133..77281,77358..77417,77504..77606,77722..77823,77913..78068,78163..78339,78824..78925,79036..79117,79706..79857,79994..80143,80237..80307,80873..81038,81483..81590,81791..81880,81977..82097,82180..82259,82620..82745,82996..83075,83339..83456))
location: region:77133-83456:-1
so has part: feature:83339-83456:-1:exon
so has part: feature:82996-83075:-1:exon
so has part: feature:82620-82745:-1:exon
so has part: feature:82180-82259:-1:exon
so has part: feature:81977-82097:-1:exon
so has part: feature:81791-81880:-1:exon
so has part: feature:81483-81590:-1:exon
so has part: feature:80873-81038:-1:exon
so has part: feature:80237-80307:-1:exon
so has part: feature:79994-80143:-1:exon
so has part: feature:79706-79857:-1:exon
so has part: feature:79036-79117:-1:exon
so has part: feature:78824-78925:-1:exon
so has part: feature:78163-78339:-1:exon
so has part: feature:77913-78068:-1:exon
so has part: feature:77722-77823:-1:exon
so has part: feature:77504-77606:-1:exon
so has part: feature:77358-77417:-1:exon
so has part: feature:77133-77281:-1:exon

XP_033927997.1
type: Protein
SIO_000068: ncbiprotein

position:77133:-1
position: 77133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83456:-1
position: 83456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83339-83456:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:82996-83075:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:82620-82745:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:82180-82259:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:81977-82097:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:81791-81880:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:81483-81590:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:80873-81038:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:80237-80307:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:79994-80143:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:79706-79857:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:79036-79117:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:78824-78925:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:78163-78339:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:77913-78068:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:77722-77823:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:77504-77606:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:77358-77417:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:77133-77281:-1:exon

LOC117437597
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437597
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(92645..100044)
location: region:92645-100044:-1
so has part: feature:92645-100044:-1:exon
subclass of: SO_0000010

117437597
type: Gene
SIO_000068: ncbigene

position:92645:-1
position: 92645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:100044:-1
position: 100044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92645-100044:-1:exon

LOC117437597
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437597
product: zinc finger protein neuro-d4-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 72% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072107.1
SIO_010081: LOC117437597
subclass of: SO_0000673
so part of: LOC117437597
location: complement(join(92645..92715,92799..92880,95758..95870,97911..98033,98288..98338,98808..98938,99900..100044))
location: region:92645-100044:-1
so has part: feature:99900-100044:-1:exon
so has part: feature:98808-98938:-1:exon
so has part: feature:98288-98338:-1:exon
so has part: feature:97911-98033:-1:exon
so has part: feature:95758-95870:-1:exon
so has part: feature:92799-92880:-1:exon
so has part: feature:92645-92715:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:99900-100044:-1:exon

position:99900:-1
position: 99900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:98808-98938:-1:exon

position:98808:-1
position: 98808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:98938:-1
position: 98938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:98288-98338:-1:exon

position:98288:-1
position: 98288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:98338:-1
position: 98338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:97911-98033:-1:exon

position:97911:-1
position: 97911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:98033:-1
position: 98033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:95758-95870:-1:exon

position:95758:-1
position: 95758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:95870:-1
position: 95870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:92799-92880:-1:exon

position:92799:-1
position: 92799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:92880:-1
position: 92880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:92645-92715:-1:exon

position:92715:-1
position: 92715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437597
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437597
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: zinc finger protein neuro-d4-like
translation: MVAPLLLTALTSHFRVRTDRNRNHPPPGERPNGPAHRRGVAKRDATDPAQVCGKRYKNRPGLSYHYTHTHLAEEEGEELGERPAPPXRNHHKQFYKELNWVPENQRRSTAGAPPPAPPPSGAPCGFCLGGSRRAPACPEELIACADCGRAGHPSCLQFTVSMAAAVRTYRWQCIECKSCSLCGTAENDDQLLFCDDCDRGYHMYCLSPPMAEPPEGSWSCHLCLRQLKDKASAFITLT
SIO_010081: LOC117437597
subclass of: SO_0000673
so part of: LOC117437597
location: complement(join(92645..92715,92799..92880,95758..95870,97911..98033,98288..98338,98808..98938,99900..100044))
location: region:92645-100044:-1
so has part: feature:99900-100044:-1:exon
so has part: feature:98808-98938:-1:exon
so has part: feature:98288-98338:-1:exon
so has part: feature:97911-98033:-1:exon
so has part: feature:95758-95870:-1:exon
so has part: feature:92799-92880:-1:exon
so has part: feature:92645-92715:-1:exon

XP_033927998.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:99900-100044:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:98808-98938:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:98288-98338:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:97911-98033:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:95758-95870:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:92799-92880:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:92645-92715:-1:exon

LOC117437614
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437614
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 99949..104974
location: region:99949-104974:1
so has part: feature:99949-104974:1:exon
subclass of: SO_0000010

117437614
type: Gene
SIO_000068: ncbigene

position:99949:1
position: 99949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104974:1
position: 104974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99949-104974:1:exon

LOC117437614
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437614
product: small nuclear ribonucleoprotein D2 polypeptide
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072145.1
SIO_010081: LOC117437614
subclass of: SO_0000673
so part of: LOC117437614
location: join(99949..100044,101988..102167,104094..104974)
location: region:99949-104974:1
so has part: feature:99949-100044:1:exon
so has part: feature:101988-102167:1:exon
so has part: feature:104094-104974:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:99949-100044:1:exon

position:100044:1
position: 100044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:101988-102167:1:exon

position:101988:1
position: 101988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102167:1
position: 102167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:104094-104974:1:exon

position:104094:1
position: 104094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437614
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437614
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small nuclear ribonucleoprotein Sm D2
translation: MSLLNKPKSEMTPEELQKREEEEFTTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
SIO_010081: LOC117437614
subclass of: SO_0000673
so part of: LOC117437614
location: join(100043..100044,101988..102167,104094..104268)
location: region:100043-104268:1
so has part: feature:100043-100044:1:exon
so has part: feature:101988-102167:1:exon
so has part: feature:104094-104268:1:exon

XP_033928036.1
type: Protein
SIO_000068: ncbiprotein

position:100043:1
position: 100043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104268:1
position: 104268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100043-100044:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:101988-102167:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:104094-104268:1:exon

LOC117437609
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437609
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 106212..107183
location: region:106212-107183:1
so has part: feature:106212-107183:1:exon
subclass of: SO_0000011

117437609
type: Gene
SIO_000068: ncbigene

position:106212:1
position: 106212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:107183:1
position: 107183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106212-107183:1:exon

LOC117437609
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13146
nc RNA class: lncRNA
gene: LOC117437609
product: uncharacterized LOC117437609
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004550475.1
SIO_010081: LOC117437609
subclass of: SO_0000673
so part of: LOC117437609
location: join(106212..106282,106357..106432,107128..107183)
location: region:106212-107183:1
so has part: feature:106212-106282:1:exon
so has part: feature:106357-106432:1:exon
so has part: feature:107128-107183:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:106212-106282:1:exon

position:106282:1
position: 106282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:106357-106432:1:exon

position:106357:1
position: 106357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106432:1
position: 106432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:107128-107183:1:exon

position:107128:1
position: 107128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437654
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437654
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 108244..109912
location: region:108244-109912:1
so has part: feature:108244-109912:1:exon
subclass of: SO_0000010

117437654
type: Gene
SIO_000068: ncbigene

position:108244:1
position: 108244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:109912:1
position: 109912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108244-109912:1:exon

LOC117437654
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437654
product: basic helix-loop-helix and HMG-box containing 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_034072195.1
SIO_010081: LOC117437654
subclass of: SO_0000673
so part of: LOC117437654
location: join(108244..108334,108978..109067,109672..109912)
location: region:108244-109912:1
so has part: feature:108244-108334:1:exon
so has part: feature:108978-109067:1:exon
so has part: feature:109672-109912:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:108244-108334:1:exon

position:108334:1
position: 108334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:108978-109067:1:exon

position:108978:1
position: 108978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:109067:1
position: 109067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:109672-109912:1:exon

position:109672:1
position: 109672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437654
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437654
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: basic helix-loop-helix and HMG box domain-containing protein 1
translation: MFCHLNRRPYLSAHPGLASTAATRELAQLWQSLSPDERRPYCARARRFSLQQGRVVRPDRDQDRDWDRDRGGESNRDRDPPPAPLHLLLAARARAGGALLAP
SIO_010081: LOC117437654
subclass of: SO_0000673
so part of: LOC117437654
location: join(108300..108334,108978..109067,109672..109855)
location: region:108300-109855:1
so has part: feature:108300-108334:1:exon
so has part: feature:108978-109067:1:exon
so has part: feature:109672-109855:1:exon

XP_033928086.1
type: Protein
SIO_000068: ncbiprotein

position:108300:1
position: 108300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:109855:1
position: 109855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108300-108334:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:108978-109067:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:109672-109855:1:exon

LOC117437651
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437651
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(110622..112401)
location: region:110622-112401:-1
so has part: feature:110622-112401:-1:exon
subclass of: SO_0000010

117437651
type: Gene
SIO_000068: ncbigene

position:110622:-1
position: 110622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112401:-1
position: 112401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110622-112401:-1:exon

LOC117437651
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437651
product: cytochrome c oxidase subunit 7A1, mitochondrial-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_034072189.1
SIO_010081: LOC117437651
subclass of: SO_0000673
so part of: LOC117437651
location: complement(join(110622..110677,110938..111022,111559..111651,112315..112401))
location: region:110622-112401:-1
so has part: feature:112315-112401:-1:exon
so has part: feature:111559-111651:-1:exon
so has part: feature:110938-111022:-1:exon
so has part: feature:110622-110677:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:112315-112401:-1:exon

position:112315:-1
position: 112315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:111559-111651:-1:exon

position:111559:-1
position: 111559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111651:-1
position: 111651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:110938-111022:-1:exon

position:110938:-1
position: 110938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111022:-1
position: 111022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:110622-110677:-1:exon

position:110677:-1
position: 110677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437651
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437651
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytochrome c oxidase subunit 7A1, mitochondrial-like
translation: MRLLRAPPLRLLRSLGPAAPPRNLHNRVREHQKLFQEDNGLPVYLKGGAMDSALYRLTTLICTGGTCYSLWCLGQASRAKKP
SIO_010081: LOC117437651
subclass of: SO_0000673
so part of: LOC117437651
location: complement(join(110622..110677,110938..111022,111559..111651,112315..112329))
location: region:110622-112329:-1
so has part: feature:112315-112329:-1:exon
so has part: feature:111559-111651:-1:exon
so has part: feature:110938-111022:-1:exon
so has part: feature:110622-110677:-1:exon

XP_033928080.1
type: Protein
SIO_000068: ncbiprotein

position:112329:-1
position: 112329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112315-112329:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111559-111651:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:110938-111022:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:110622-110677:-1:exon

LOC117437652
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437652
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(114615..127122)
location: region:114615-127122:-1
so has part: feature:114615-127122:-1:exon
subclass of: SO_0000010

117437652
type: Gene
SIO_000068: ncbigene

position:114615:-1
position: 114615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127122:-1
position: 127122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:114615-127122:-1:exon

LOC117437652
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437652
product: striatin 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_034072191.1
SIO_010081: LOC117437652
subclass of: SO_0000673
so part of: LOC117437652
location: complement(join(114615..115034,116005..116091,116209..116307,117196..117336,118563..118727,119361..119482,119875..119922,120712..120878,121616..121743,122354..122440,122529..122670,123585..123723,123797..123952,124037..124115,124189..124259,124348..124451,126973..127122))
location: region:114615-127122:-1
so has part: feature:126973-127122:-1:exon
so has part: feature:124348-124451:-1:exon
so has part: feature:124189-124259:-1:exon
so has part: feature:124037-124115:-1:exon
so has part: feature:123797-123952:-1:exon
so has part: feature:123585-123723:-1:exon
so has part: feature:122529-122670:-1:exon
so has part: feature:122354-122440:-1:exon
so has part: feature:121616-121743:-1:exon
so has part: feature:120712-120878:-1:exon
so has part: feature:119875-119922:-1:exon
so has part: feature:119361-119482:-1:exon
so has part: feature:118563-118727:-1:exon
so has part: feature:117196-117336:-1:exon
so has part: feature:116209-116307:-1:exon
so has part: feature:116005-116091:-1:exon
so has part: feature:114615-115034:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:126973-127122:-1:exon

position:126973:-1
position: 126973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:124348-124451:-1:exon

position:124348:-1
position: 124348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:124451:-1
position: 124451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:124189-124259:-1:exon

position:124189:-1
position: 124189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:124259:-1
position: 124259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:124037-124115:-1:exon

position:124037:-1
position: 124037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:124115:-1
position: 124115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:123797-123952:-1:exon

position:123797:-1
position: 123797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:123952:-1
position: 123952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:123585-123723:-1:exon

position:123585:-1
position: 123585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:123723:-1
position: 123723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:122529-122670:-1:exon

position:122529:-1
position: 122529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:122670:-1
position: 122670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:122354-122440:-1:exon

position:122354:-1
position: 122354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:122440:-1
position: 122440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:121616-121743:-1:exon

position:121616:-1
position: 121616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:121743:-1
position: 121743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:120712-120878:-1:exon

position:120712:-1
position: 120712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:120878:-1
position: 120878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:119875-119922:-1:exon

position:119875:-1
position: 119875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:119922:-1
position: 119922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:119361-119482:-1:exon

position:119361:-1
position: 119361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:119482:-1
position: 119482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:118563-118727:-1:exon

position:118563:-1
position: 118563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:118727:-1
position: 118727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:117196-117336:-1:exon

position:117196:-1
position: 117196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:117336:-1
position: 117336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:116209-116307:-1:exon

position:116209:-1
position: 116209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116307:-1
position: 116307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:116005-116091:-1:exon

position:116005:-1
position: 116005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116091:-1
position: 116091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:114615-115034:-1:exon

position:115034:-1
position: 115034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437652
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437652
product: striatin 4, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_034072193.1
SIO_010081: LOC117437652
subclass of: SO_0000673
so part of: LOC117437652
location: complement(join(114615..115034,116005..116091,116209..116307,117196..117336,118563..118727,119361..119482,119875..119922,120712..120878,121616..121743,122354..122440,122529..122670,123585..123723,123797..123952,124037..124115,124189..124259,124348..124430,126852..126964))
location: region:114615-126964:-1
so has part: feature:126852-126964:-1:exon
so has part: feature:124348-124430:-1:exon
so has part: feature:124189-124259:-1:exon
so has part: feature:124037-124115:-1:exon
so has part: feature:123797-123952:-1:exon
so has part: feature:123585-123723:-1:exon
so has part: feature:122529-122670:-1:exon
so has part: feature:122354-122440:-1:exon
so has part: feature:121616-121743:-1:exon
so has part: feature:120712-120878:-1:exon
so has part: feature:119875-119922:-1:exon
so has part: feature:119361-119482:-1:exon
so has part: feature:118563-118727:-1:exon
so has part: feature:117196-117336:-1:exon
so has part: feature:116209-116307:-1:exon
so has part: feature:116005-116091:-1:exon
so has part: feature:114615-115034:-1:exon

position:126964:-1
position: 126964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126852-126964:-1:exon

position:126852:-1
position: 126852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:124348-124430:-1:exon

position:124430:-1
position: 124430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:124189-124259:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124037-124115:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:123797-123952:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:123585-123723:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:122529-122670:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:122354-122440:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:121616-121743:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:120712-120878:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:119875-119922:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:119361-119482:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:118563-118727:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:117196-117336:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:116209-116307:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:116005-116091:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:114615-115034:-1:exon

LOC117437652
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437652
product: striatin 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_034072192.1
SIO_010081: LOC117437652
subclass of: SO_0000673
so part of: LOC117437652
location: complement(join(114615..115034,116005..116091,116209..116307,117196..117336,118563..118727,119361..119482,119875..119922,120712..120878,121616..121743,122354..122440,122529..122670,123585..123723,123797..123952,124037..124115,124189..124259,124348..124451,126852..126964))
location: region:114615-126964:-1
so has part: feature:126852-126964:-1:exon
so has part: feature:124348-124451:-1:exon
so has part: feature:124189-124259:-1:exon
so has part: feature:124037-124115:-1:exon
so has part: feature:123797-123952:-1:exon
so has part: feature:123585-123723:-1:exon
so has part: feature:122529-122670:-1:exon
so has part: feature:122354-122440:-1:exon
so has part: feature:121616-121743:-1:exon
so has part: feature:120712-120878:-1:exon
so has part: feature:119875-119922:-1:exon
so has part: feature:119361-119482:-1:exon
so has part: feature:118563-118727:-1:exon
so has part: feature:117196-117336:-1:exon
so has part: feature:116209-116307:-1:exon
so has part: feature:116005-116091:-1:exon
so has part: feature:114615-115034:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:126852-126964:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:124348-124451:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124189-124259:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124037-124115:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:123797-123952:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:123585-123723:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:122529-122670:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:122354-122440:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:121616-121743:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:120712-120878:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:119875-119922:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:119361-119482:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:118563-118727:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:117196-117336:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:116209-116307:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:116005-116091:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:114615-115034:-1:exon

LOC117437652
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437652
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: striatin-4 isoform X1
translation: MAAERAAPSGPGPGLSLPGMLHFLQREWFRFEAERGRWEAERAELQAQVAFLQGERKGQENLKSDLVRRIRMLESALKQERSKYHKLKFGTDPIQGDRKEGAEPATNGPMDVAATDGAPLAWKEGRQLLRQYLEEVGCSDTILDMRSRRVRSLLPRGPPIPTGGSPPSAASPLLRRIQEQIQRNAGKEPDEQEQILFPSGEDEDSDEEEDGDGAQPPPGQPQHKKQRVKLPPSPVLPEVDDDDDDDDDDDDSEDALNEFDFLGSGDTRGQGDPMELERRRGRWAELRDVDGLLPTGSVGPARPPEGTPTSSMGITPDAFILDPIGADPVPLGDLAELTVTNDSELGCDAPPPGGRCWSPLLALRGHLDAVRGVTFHPIAPALLTASEDGTVRLWDLRRAPAARRSAAVDVEPVYAFRGHRGPVLAVAMGCDPGLCCTGGLDACIRCWRLPELQRDPYDGYDPQVLSAVLEGHHDAVWGLVFNGAGDRLASCSADGTVRVWDPRRGENLLTYEPQSEHGVPTSVTFSAMEPGRAVVAFRTGAIVLYDVEMAQPVLVLDPRQGGGGCQVNQVVSHPSQPVSITASDDRSIRFLDHRTGKVVHSMVAHLDAVTCLAVDPNGVFLMSGSHDCSLRLWHLPQPRCLQELRAHCRKHQEAVHAVTFHPCQSLCASAGADAIAKVFG
SIO_010081: LOC117437652
subclass of: SO_0000673
so part of: LOC117437652
location: complement(join(114865..115034,116005..116091,116209..116307,117196..117336,118563..118727,119361..119482,119875..119922,120712..120878,121616..121743,122354..122440,122529..122670,123585..123723,123797..123952,124037..124115,124189..124259,124348..124451,126973..127110))
location: region:114865-127110:-1
so has part: feature:126973-127110:-1:exon
so has part: feature:124348-124451:-1:exon
so has part: feature:124189-124259:-1:exon
so has part: feature:124037-124115:-1:exon
so has part: feature:123797-123952:-1:exon
so has part: feature:123585-123723:-1:exon
so has part: feature:122529-122670:-1:exon
so has part: feature:122354-122440:-1:exon
so has part: feature:121616-121743:-1:exon
so has part: feature:120712-120878:-1:exon
so has part: feature:119875-119922:-1:exon
so has part: feature:119361-119482:-1:exon
so has part: feature:118563-118727:-1:exon
so has part: feature:117196-117336:-1:exon
so has part: feature:116209-116307:-1:exon
so has part: feature:116005-116091:-1:exon
so has part: feature:114865-115034:-1:exon

XP_033928082.1
type: Protein
SIO_000068: ncbiprotein

position:114865:-1
position: 114865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127110:-1
position: 127110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126973-127110:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:124348-124451:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124189-124259:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124037-124115:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:123797-123952:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:123585-123723:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:122529-122670:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:122354-122440:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:121616-121743:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:120712-120878:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:119875-119922:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:119361-119482:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:118563-118727:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:117196-117336:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:116209-116307:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:116005-116091:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:114865-115034:-1:exon

LOC117437652
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437652
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: striatin-4 isoform X3
translation: MLHFLQREWFRFEAERGRWEAERAELQGERKGQENLKSDLVRRIRMLESALKQERSKYHKLKFGTDPIQGDRKEGAEPATNGPMDVAATDGAPLAWKEGRQLLRQYLEEVGCSDTILDMRSRRVRSLLPRGPPIPTGGSPPSAASPLLRRIQEQIQRNAGKEPDEQEQILFPSGEDEDSDEEEDGDGAQPPPGQPQHKKQRVKLPPSPVLPEVDDDDDDDDDDDDSEDALNEFDFLGSGDTRGQGDPMELERRRGRWAELRDVDGLLPTGSVGPARPPEGTPTSSMGITPDAFILDPIGADPVPLGDLAELTVTNDSELGCDAPPPGGRCWSPLLALRGHLDAVRGVTFHPIAPALLTASEDGTVRLWDLRRAPAARRSAAVDVEPVYAFRGHRGPVLAVAMGCDPGLCCTGGLDACIRCWRLPELQRDPYDGYDPQVLSAVLEGHHDAVWGLVFNGAGDRLASCSADGTVRVWDPRRGENLLTYEPQSEHGVPTSVTFSAMEPGRAVVAFRTGAIVLYDVEMAQPVLVLDPRQGGGGCQVNQVVSHPSQPVSITASDDRSIRFLDHRTGKVVHSMVAHLDAVTCLAVDPNGVFLMSGSHDCSLRLWHLPQPRCLQELRAHCRKHQEAVHAVTFHPCQSLCASAGADAIAKVFG
SIO_010081: LOC117437652
subclass of: SO_0000673
so part of: LOC117437652
location: complement(join(114865..115034,116005..116091,116209..116307,117196..117336,118563..118727,119361..119482,119875..119922,120712..120878,121616..121743,122354..122440,122529..122670,123585..123723,123797..123952,124037..124115,124189..124259,124348..124430,126852..126932))
location: region:114865-126932:-1
so has part: feature:126852-126932:-1:exon
so has part: feature:124348-124430:-1:exon
so has part: feature:124189-124259:-1:exon
so has part: feature:124037-124115:-1:exon
so has part: feature:123797-123952:-1:exon
so has part: feature:123585-123723:-1:exon
so has part: feature:122529-122670:-1:exon
so has part: feature:122354-122440:-1:exon
so has part: feature:121616-121743:-1:exon
so has part: feature:120712-120878:-1:exon
so has part: feature:119875-119922:-1:exon
so has part: feature:119361-119482:-1:exon
so has part: feature:118563-118727:-1:exon
so has part: feature:117196-117336:-1:exon
so has part: feature:116209-116307:-1:exon
so has part: feature:116005-116091:-1:exon
so has part: feature:114865-115034:-1:exon

XP_033928084.1
type: Protein
SIO_000068: ncbiprotein

position:126932:-1
position: 126932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126852-126932:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:124348-124430:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124189-124259:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124037-124115:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:123797-123952:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:123585-123723:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:122529-122670:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:122354-122440:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:121616-121743:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:120712-120878:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:119875-119922:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:119361-119482:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:118563-118727:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:117196-117336:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:116209-116307:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:116005-116091:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:114865-115034:-1:exon

LOC117437652
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437652
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: striatin-4 isoform X2
translation: MLHFLQREWFRFEAERGRWEAERAELQAQVAFLQGERKGQENLKSDLVRRIRMLESALKQERSKYHKLKFGTDPIQGDRKEGAEPATNGPMDVAATDGAPLAWKEGRQLLRQYLEEVGCSDTILDMRSRRVRSLLPRGPPIPTGGSPPSAASPLLRRIQEQIQRNAGKEPDEQEQILFPSGEDEDSDEEEDGDGAQPPPGQPQHKKQRVKLPPSPVLPEVDDDDDDDDDDDDSEDALNEFDFLGSGDTRGQGDPMELERRRGRWAELRDVDGLLPTGSVGPARPPEGTPTSSMGITPDAFILDPIGADPVPLGDLAELTVTNDSELGCDAPPPGGRCWSPLLALRGHLDAVRGVTFHPIAPALLTASEDGTVRLWDLRRAPAARRSAAVDVEPVYAFRGHRGPVLAVAMGCDPGLCCTGGLDACIRCWRLPELQRDPYDGYDPQVLSAVLEGHHDAVWGLVFNGAGDRLASCSADGTVRVWDPRRGENLLTYEPQSEHGVPTSVTFSAMEPGRAVVAFRTGAIVLYDVEMAQPVLVLDPRQGGGGCQVNQVVSHPSQPVSITASDDRSIRFLDHRTGKVVHSMVAHLDAVTCLAVDPNGVFLMSGSHDCSLRLWHLPQPRCLQELRAHCRKHQEAVHAVTFHPCQSLCASAGADAIAKVFG
SIO_010081: LOC117437652
subclass of: SO_0000673
so part of: LOC117437652
location: complement(join(114865..115034,116005..116091,116209..116307,117196..117336,118563..118727,119361..119482,119875..119922,120712..120878,121616..121743,122354..122440,122529..122670,123585..123723,123797..123952,124037..124115,124189..124259,124348..124451,126852..126932))
location: region:114865-126932:-1
so has part: feature:126852-126932:-1:exon
so has part: feature:124348-124451:-1:exon
so has part: feature:124189-124259:-1:exon
so has part: feature:124037-124115:-1:exon
so has part: feature:123797-123952:-1:exon
so has part: feature:123585-123723:-1:exon
so has part: feature:122529-122670:-1:exon
so has part: feature:122354-122440:-1:exon
so has part: feature:121616-121743:-1:exon
so has part: feature:120712-120878:-1:exon
so has part: feature:119875-119922:-1:exon
so has part: feature:119361-119482:-1:exon
so has part: feature:118563-118727:-1:exon
so has part: feature:117196-117336:-1:exon
so has part: feature:116209-116307:-1:exon
so has part: feature:116005-116091:-1:exon
so has part: feature:114865-115034:-1:exon

XP_033928083.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:126852-126932:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:124348-124451:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124189-124259:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124037-124115:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:123797-123952:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:123585-123723:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:122529-122670:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:122354-122440:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:121616-121743:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:120712-120878:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:119875-119922:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:119361-119482:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:118563-118727:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:117196-117336:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:116209-116307:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:116005-116091:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:114865-115034:-1:exon

LOC101871142
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC101871142
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 128224..130242
location: region:128224-130242:1
so has part: feature:128224-130242:1:exon
subclass of: SO_0000010

101871142
type: Gene
SIO_000068: ncbigene

position:128224:1
position: 128224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130242:1
position: 130242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:128224-130242:1:exon

LOC101871142
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC101871142
product: fukutin related protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005139800.3
SIO_010081: LOC101871142
subclass of: SO_0000673
so part of: LOC101871142
location: 128224..130242
location: region:128224-130242:1
so has part: feature:128224-130242:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:128224-130242:1:exon

LOC101871142
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC101871142
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: fukutin-related protein
translation: MRVTPCQASLAAAIGLNLLLLLYWIRPHAPVPPSSCRIPRGIPGVTVLLREYNPMDNDLVGTSRSFIPQHPVLVVTDSVLYPPLPLPPGVAVFPLRPVPELPAPLAHPERLVRTRHVALVPDGTRAVPGLLERMRDALEDGNGEARMAAAPVGARPLRCLEVRLEAREWTVRYRDATGSTGLCQAVDGAAVFLLRSRDLFALPFPLDRPVAQALFIQAAFRGWKLRVVPAAFPLSRRLPLAPHLQWETQTELETQRLMRDLGIKREVLPDGRERWYGCGKDTTRCFGTIHAGTPQYILTGRWTPPCCLRALRETARHVVSILESSGIRYWLEGGSLLGAVRTGDIIPWDYDVDLGIYKEDIGKCRWLAAAAAGNAVEDPEGFLWEKASEGEFYRVHYSRSNRLHVDLWPFYSRGGVMTKDTWLGHRQDVEFPERFLQPREPLEFVGMMMMAPNRAREFLEFKFGAGAIENPEYPNPSVKRMGKE
SIO_010081: LOC101871142
subclass of: SO_0000673
so part of: LOC101871142
location: 128453..129907
location: region:128453-129907:1
so has part: feature:128453-129907:1:exon

XP_005139857.3
type: Protein
SIO_000068: ncbiprotein

position:128453:1
position: 128453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:129907:1
position: 129907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:128453-129907:1:exon

LOC117437628
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437628
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(130408..136621)
location: region:130408-136621:-1
so has part: feature:130408-136621:-1:exon
subclass of: SO_0000010

117437628
type: Gene
SIO_000068: ncbigene

position:130408:-1
position: 130408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:136621:-1
position: 136621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:130408-136621:-1:exon

LOC117437628
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437628
product: AP-2 complex subunit sigma
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072161.1
SIO_010081: LOC117437628
subclass of: SO_0000673
so part of: LOC117437628
location: complement(join(130408..130565,131132..131191,133069..133182,135184..135333,136536..136621))
location: region:130408-136621:-1
so has part: feature:136536-136621:-1:exon
so has part: feature:135184-135333:-1:exon
so has part: feature:133069-133182:-1:exon
so has part: feature:131132-131191:-1:exon
so has part: feature:130408-130565:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:136536-136621:-1:exon

position:136536:-1
position: 136536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:135184-135333:-1:exon

position:135184:-1
position: 135184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:135333:-1
position: 135333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:133069-133182:-1:exon

position:133069:-1
position: 133069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133182:-1
position: 133182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:131132-131191:-1:exon

position:131132:-1
position: 131132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:131191:-1
position: 131191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:130408-130565:-1:exon

position:130565:-1
position: 130565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437628
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437628
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AP-2 complex subunit sigma
translation: MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVTDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE
SIO_010081: LOC117437628
subclass of: SO_0000673
so part of: LOC117437628
location: complement(join(130464..130565,131132..131191,133069..133182,135184..135333,136536..136538))
location: region:130464-136538:-1
so has part: feature:136536-136538:-1:exon
so has part: feature:135184-135333:-1:exon
so has part: feature:133069-133182:-1:exon
so has part: feature:131132-131191:-1:exon
so has part: feature:130464-130565:-1:exon

XP_033928052.1
type: Protein
SIO_000068: ncbiprotein

position:130464:-1
position: 130464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:136538:-1
position: 136538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136536-136538:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:135184-135333:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:133069-133182:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:131132-131191:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:130464-130565:-1:exon

LOC101872049
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC101872049
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 137220..152352
location: region:137220-152352:1
so has part: feature:137220-152352:1:exon
subclass of: SO_0000010

101872049
type: Gene
SIO_000068: ncbigene

position:137220:1
position: 137220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:152352:1
position: 152352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:137220-152352:1:exon

LOC101872049
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC101872049
product: Rho GTPase activating protein 35
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 17 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072160.1
SIO_010081: LOC101872049
subclass of: SO_0000673
so part of: LOC101872049
location: join(137220..137281,138492..138561,143032..146862,148182..148326,148917..148994,149357..149488,149707..149812,151806..152352)
location: region:137220-152352:1
so has part: feature:137220-137281:1:exon
so has part: feature:138492-138561:1:exon
so has part: feature:143032-146862:1:exon
so has part: feature:148182-148326:1:exon
so has part: feature:148917-148994:1:exon
so has part: feature:149357-149488:1:exon
so has part: feature:149707-149812:1:exon
so has part: feature:151806-152352:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:137220-137281:1:exon

position:137281:1
position: 137281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:138492-138561:1:exon

position:138492:1
position: 138492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138561:1
position: 138561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:143032-146862:1:exon

position:143032:1
position: 143032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:146862:1
position: 146862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:148182-148326:1:exon

position:148182:1
position: 148182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:148326:1
position: 148326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:148917-148994:1:exon

position:148917:1
position: 148917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:148994:1
position: 148994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:149357-149488:1:exon

position:149357:1
position: 149357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:149488:1
position: 149488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:149707-149812:1:exon

position:149707:1
position: 149707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:149812:1
position: 149812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:151806-152352:1:exon

position:151806:1
position: 151806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101872049
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC101872049
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rho GTPase-activating protein 35
translation: MMMARKQDVRIPTYNVSVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADDFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVGRALEECGECRLHVVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPEGKLLVDGFLLCVDVSRGMNRSFDEQLKFVSNLYNQVAKTKKPVVVVLTKCDEGVERYIRDAHAFALSKKSLQVVETSARSNVNVDLAFSTLVQLMDRSRGKAKIIPYFEALKQQSQQIAAAKDKYEWLVGRIVKSHNETWSNVSFKMQSSPEYQDYVYLEGTPKAKKLFLQHVHRLKQEHIERRRKMYLSVLPQAFEALIPDLDELDHLSCVKVEKLLETKADFLKWFVVLEETPWDATSHIDNMENERIPLDLMETQAAKQLYEAHLEKLRNERKRAEMRRAFKENLETSPFITPGKPWEEARSFIMNEDFYLWLEEAVYMDIYGKHQKQIIDRAKEDFQELLLEYSELFYELELDAKPSKEKMGVIQEVLGEEQRFKALQKLQAERDALILKHIHFVYHPTKETCPSCPQCVDSRMEQLLGSRAPRKPRNPEPVLDRINLVILGKDGLARELANEIRALCTNDDKYVLEGKMYELALRPIEGNVRLPVNAFQTPTFQPHGCLCLYNSKESLSYVVESIEKSRESTLGRRDAHGAHLPLTLILVNKRGDPSGETLQSLIQQGQQIASKLQCVFLDPAAAGIGYGRNINEKHISQVLKGLLDSKRNLNLVGPTAGIKELGDVDLRIVMCLMCGDPFNADELLVPILHPHGSRPAPCGSGSSVLLELPIGPHKRRLELSLLSYHSSFSIRKSRLVHGYIVFYAAKRRASLAMLRAFLCEVQDIIPIQLVALTDGSGDLLDNDVSREQVLEGEEIAQEIDGKFTTIPCGQPQHKLDTFQAFFKDVLERKTIIEATHMYDNAAEACSTSEDVFNSPRAGSPLCNSNLQDSEEDTEPPSYSPFREDLAVAKDHSKLSMELEGNDGLSFISVMSSFESKLNNKVPPPVKPKPPVHFELSKGDLSYLEQGHRDGQRKSMTSGTWLPSDCFDPSDYAEPMDAVVKPRNEEENIYSVPHDSTQGKIITIRNINKTQSNGSGNGSDSEMDTSSLERGRKVSVVAKPVLYRSRCSRLGRFASYRTSFSVGSDDELGPIRKKEEEQSSQGYKGDNAVIPYETADGEDPRRRNILRSLRRTTKKPKAKARPSLPKSPWESSYFGVPLSSVVSADRPIPVFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHGLDLAEKDFTVNTVAGAMKSFFSELPEPLVPYSMQVELVEAHKINDREQKLHALKEVLRKFPKENYEVFKYVIGHLNKVSHQHRVNLMTSENLSICFWPTLMRPDFSTMDALTATRSYQTIIDLFIQQSPFFFSSSSSSSSRPIPEPPLPPPPPHPPPASPPRTPPSPVQVLIPSQLHAEPPAL
SIO_010081: LOC101872049
subclass of: SO_0000673
so part of: LOC101872049
location: join(143194..146862,148182..148326,148917..148994,149357..149488,149707..149812,151806..152127)
location: region:143194-152127:1
so has part: feature:143194-146862:1:exon
so has part: feature:148182-148326:1:exon
so has part: feature:148917-148994:1:exon
so has part: feature:149357-149488:1:exon
so has part: feature:149707-149812:1:exon
so has part: feature:151806-152127:1:exon

XP_033928051.1
type: Protein
SIO_000068: ncbiprotein

position:143194:1
position: 143194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:152127:1
position: 152127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143194-146862:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:148182-148326:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:148917-148994:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:149357-149488:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:149707-149812:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:151806-152127:1:exon

LOC117437626
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437626
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(156833..166424)
location: region:156833-166424:-1
so has part: feature:156833-166424:-1:exon
subclass of: SO_0000010

117437626
type: Gene
SIO_000068: ncbigene

position:156833:-1
position: 156833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:166424:-1
position: 166424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:156833-166424:-1:exon

LOC117437626
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437626
product: tubulin folding cofactor B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072157.1
SIO_010081: LOC117437626
subclass of: SO_0000673
so part of: LOC117437626
location: complement(join(156833..156979,158231..158303,160387..160578,162888..162984,164435..164578,166251..166424))
location: region:156833-166424:-1
so has part: feature:166251-166424:-1:exon
so has part: feature:164435-164578:-1:exon
so has part: feature:162888-162984:-1:exon
so has part: feature:160387-160578:-1:exon
so has part: feature:158231-158303:-1:exon
so has part: feature:156833-156979:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:166251-166424:-1:exon

position:166251:-1
position: 166251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:164435-164578:-1:exon

position:164435:-1
position: 164435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:164578:-1
position: 164578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:162888-162984:-1:exon

position:162888:-1
position: 162888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:162984:-1
position: 162984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:160387-160578:-1:exon

position:160387:-1
position: 160387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:160578:-1
position: 160578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:158231-158303:-1:exon

position:158231:-1
position: 158231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:158303:-1
position: 158303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:156833-156979:-1:exon

position:156979:-1
position: 156979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437626
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437626
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tubulin-folding cofactor B
translation: MKAVSGPGAGTGAGTGNGACTGAGSVLLSVSSSLTARRAPKRYSTGITVAELKCKLELVVGSPASCMELELYGTDDELLGRLDCDEALLGSYELWDGCRVHVIDRSGARIGEYEDVSQVEKYEMTESDYDKRPESVRSFLRQRQWGRFDAEAAERREQQLRQRREQEAALAAALPVGTRCLVRVPGQPSRRGTVMYVGQTDFKPGHWVGVRYDEPLGKHDGSVGSRRYFECPPKYGAFVKPQSVTPGDFPEEELGLEEEEL
SIO_010081: LOC117437626
subclass of: SO_0000673
so part of: LOC117437626
location: complement(join(156859..156979,158231..158303,160387..160578,162888..162984,164435..164578,166251..166409))
location: region:156859-166409:-1
so has part: feature:166251-166409:-1:exon
so has part: feature:164435-164578:-1:exon
so has part: feature:162888-162984:-1:exon
so has part: feature:160387-160578:-1:exon
so has part: feature:158231-158303:-1:exon
so has part: feature:156859-156979:-1:exon

XP_033928048.1
type: Protein
SIO_000068: ncbiprotein

position:156859:-1
position: 156859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:166409:-1
position: 166409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166251-166409:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:164435-164578:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:162888-162984:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:160387-160578:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:158231-158303:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:156859-156979:-1:exon

LOC117437629
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437629
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 166564..171374
location: region:166564-171374:1
so has part: feature:166564-171374:1:exon
subclass of: SO_0000010

117437629
type: Gene
SIO_000068: ncbigene

position:166564:1
position: 166564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:171374:1
position: 171374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166564-171374:1:exon

LOC117437629
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437629
product: DNA-directed RNA polymerase II subunit RPB9, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072162.1
SIO_010081: LOC117437629
subclass of: SO_0000673
so part of: LOC117437629
location: join(166564..166677,168062..168116,169401..169474,170118..170192,170817..170868,171271..171374)
location: region:166564-171374:1
so has part: feature:166564-166677:1:exon
so has part: feature:168062-168116:1:exon
so has part: feature:169401-169474:1:exon
so has part: feature:170118-170192:1:exon
so has part: feature:170817-170868:1:exon
so has part: feature:171271-171374:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:166564-166677:1:exon

position:166677:1
position: 166677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:168062-168116:1:exon

position:168062:1
position: 168062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:168116:1
position: 168116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:169401-169474:1:exon

position:169401:1
position: 169401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:169474:1
position: 169474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:170118-170192:1:exon

position:170118:1
position: 170118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:170192:1
position: 170192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:170817-170868:1:exon

position:170817:1
position: 170817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:170868:1
position: 170868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:171271-171374:1:exon

position:171271:1
position: 171271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437629
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437629
product: DNA-directed RNA polymerase II subunit RPB9, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_034072163.1
SIO_010081: LOC117437629
subclass of: SO_0000673
so part of: LOC117437629
location: join(166569..166647,168062..168116,169401..169474,170118..170192,170817..170868,171271..171374)
location: region:166569-171374:1
so has part: feature:166569-166647:1:exon
so has part: feature:168062-168116:1:exon
so has part: feature:169401-169474:1:exon
so has part: feature:170118-170192:1:exon
so has part: feature:170817-170868:1:exon
so has part: feature:171271-171374:1:exon

position:166569:1
position: 166569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166569-166647:1:exon

position:166647:1
position: 166647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:168062-168116:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:169401-169474:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:170118-170192:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:170817-170868:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:171271-171374:1:exon

LOC117437629
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437629
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-directed RNA polymerase II subunit RPB9 isoform X1
translation: MRGAAMETDGAYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE
SIO_010081: LOC117437629
subclass of: SO_0000673
so part of: LOC117437629
location: join(166604..166677,168062..168116,169401..169474,170118..170192,170817..170868,171271..171333)
location: region:166604-171333:1
so has part: feature:166604-166677:1:exon
so has part: feature:168062-168116:1:exon
so has part: feature:169401-169474:1:exon
so has part: feature:170118-170192:1:exon
so has part: feature:170817-170868:1:exon
so has part: feature:171271-171333:1:exon

XP_033928053.1
type: Protein
SIO_000068: ncbiprotein

position:166604:1
position: 166604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:171333:1
position: 171333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166604-166677:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:168062-168116:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:169401-169474:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:170118-170192:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:170817-170868:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:171271-171333:1:exon

LOC117437629
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437629
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-directed RNA polymerase II subunit RPB9 isoform X2
translation: MRGAAMETDGAYEPGNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE
SIO_010081: LOC117437629
subclass of: SO_0000673
so part of: LOC117437629
location: join(166604..166647,168062..168116,169401..169474,170118..170192,170817..170868,171271..171333)
location: region:166604-171333:1
so has part: feature:166604-166647:1:exon
so has part: feature:168062-168116:1:exon
so has part: feature:169401-169474:1:exon
so has part: feature:170118-170192:1:exon
so has part: feature:170817-170868:1:exon
so has part: feature:171271-171333:1:exon

XP_033928054.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:166604-166647:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:168062-168116:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:169401-169474:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:170118-170192:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:170817-170868:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:171271-171333:1:exon

LOC117437598
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437598
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <178806..195400
location: region:178806-195400:1
so has part: feature:178806-195400:1:exon
subclass of: SO_0000010

117437598
type: Gene
SIO_000068: ncbigene

position:178806:1
position: 178806
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:195400:1
position: 195400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:178806-195400:1:exon

LOC117437598
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437598
product: CAP-Gly domain-containing linker protein 3-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_034072108.1
SIO_010081: LOC117437598
subclass of: SO_0000673
so part of: LOC117437598
location: join(<178806..178911,181250..181389,183509..183602,184766..184929,185986..186104,188066..188302,189914..190049,190690..190812,191887..192015,193396..193519,193722..193786,195179..195251,195331..195400)
location: region:178806-195400:1
so has part: feature:178806-178911:1:exon
so has part: feature:181250-181389:1:exon
so has part: feature:183509-183602:1:exon
so has part: feature:184766-184929:1:exon
so has part: feature:185986-186104:1:exon
so has part: feature:188066-188302:1:exon
so has part: feature:189914-190049:1:exon
so has part: feature:190690-190812:1:exon
so has part: feature:191887-192015:1:exon
so has part: feature:193396-193519:1:exon
so has part: feature:193722-193786:1:exon
so has part: feature:195179-195251:1:exon
so has part: feature:195331-195400:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:178806-178911:1:exon

position:178911:1
position: 178911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:181250-181389:1:exon

position:181250:1
position: 181250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:181389:1
position: 181389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:183509-183602:1:exon

position:183509:1
position: 183509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:183602:1
position: 183602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:184766-184929:1:exon

position:184766:1
position: 184766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:184929:1
position: 184929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:185986-186104:1:exon

position:185986:1
position: 185986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:186104:1
position: 186104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:188066-188302:1:exon

position:188066:1
position: 188066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:188302:1
position: 188302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:189914-190049:1:exon

position:189914:1
position: 189914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:190049:1
position: 190049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:190690-190812:1:exon

position:190690:1
position: 190690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:190812:1
position: 190812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:191887-192015:1:exon

position:191887:1
position: 191887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:192015:1
position: 192015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:193396-193519:1:exon

position:193396:1
position: 193396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:193519:1
position: 193519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:193722-193786:1:exon

position:193722:1
position: 193722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:193786:1
position: 193786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:195179-195251:1:exon

position:195179:1
position: 195179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:195251:1
position: 195251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:195331-195400:1:exon

position:195331:1
position: 195331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437598
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437598
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: CAP-Gly domain-containing linker protein 3-like
translation: PEPPPEPTSGDPPPDPPRRRPMVHPAAPAPLPKDYAFTFFDPNDAACREILQDPSTSVPQLFAILRQWVPQVQHNVDLIGNEILRRGCHVNDRDGLTDMTLLHYACKAGAHGVGDPAAAVRLSTRLLALGGDVTLRSRWTHMNALHYAAYFDVPELIRTLLRAAAPRVLHSTCSDFSHGTALHIAASNLCLGSVRCLLEHGADPAMRNSKGQVAAEVVPDPTDMALDKAEAALVARELRRLLEEAVPLSCSLPRVTLPNYDNLPGNSVLLSMGLALGDRVSLPGGKVGTLRFCGTTAFASGQWAGVELDEPEGKNDGSVGGVRYFICPPKQGIFASVSKISKAEEQPPAPSPPHSPPEAPARGSHRSRKDKRGHRKRGGAWLDREGRRVAPGDMVLVAGQRQGRARFYGRTDFAPGYWFGVELDSAGGKHDGSVFGVRYFSCPPKHGVFAPPSRVQRVGGPREEPGDTAPEKKVQQVTVSQPKHNFPAVRTPKDITSESSFSRLLFCCWFPWMLRAEMQS
SIO_010081: LOC117437598
subclass of: SO_0000673
so part of: LOC117437598
location: join(<178806..178911,181250..181389,183509..183602,184766..184929,185986..186104,188066..188302,189914..190049,190690..190812,191887..192015,193396..193519,193722..193786,195179..195251,195331..195385)
location: region:178806-195385:1
so has part: feature:178806-178911:1:exon
so has part: feature:181250-181389:1:exon
so has part: feature:183509-183602:1:exon
so has part: feature:184766-184929:1:exon
so has part: feature:185986-186104:1:exon
so has part: feature:188066-188302:1:exon
so has part: feature:189914-190049:1:exon
so has part: feature:190690-190812:1:exon
so has part: feature:191887-192015:1:exon
so has part: feature:193396-193519:1:exon
so has part: feature:193722-193786:1:exon
so has part: feature:195179-195251:1:exon
so has part: feature:195331-195385:1:exon

XP_033927999.1
type: Protein
SIO_000068: ncbiprotein

position:195385:1
position: 195385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:178806-178911:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181250-181389:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:183509-183602:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:184766-184929:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:185986-186104:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:188066-188302:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:189914-190049:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:190690-190812:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:191887-192015:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:193396-193519:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:193722-193786:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:195179-195251:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:195331-195385:1:exon

LOC117437616
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437616
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 197810..204906
location: region:197810-204906:1
so has part: feature:197810-204906:1:exon
subclass of: SO_0000010

117437616
type: Gene
SIO_000068: ncbigene

position:197810:1
position: 197810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204906:1
position: 204906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:197810-204906:1:exon

LOC117437616
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437616
product: calpain small subunit 1-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072147.1
SIO_010081: LOC117437616
subclass of: SO_0000673
so part of: LOC117437616
location: join(197810..197995,198595..198628,198734..198823,200168..200225,202102..202166,202250..202318,203236..203314,203980..204097,204569..204627,204762..204906)
location: region:197810-204906:1
so has part: feature:197810-197995:1:exon
so has part: feature:198595-198628:1:exon
so has part: feature:198734-198823:1:exon
so has part: feature:200168-200225:1:exon
so has part: feature:202102-202166:1:exon
so has part: feature:202250-202318:1:exon
so has part: feature:203236-203314:1:exon
so has part: feature:203980-204097:1:exon
so has part: feature:204569-204627:1:exon
so has part: feature:204762-204906:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:197810-197995:1:exon

position:197995:1
position: 197995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:198595-198628:1:exon

position:198595:1
position: 198595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198628:1
position: 198628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:198734-198823:1:exon

position:198734:1
position: 198734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198823:1
position: 198823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:200168-200225:1:exon

position:200168:1
position: 200168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200225:1
position: 200225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:202102-202166:1:exon

position:202102:1
position: 202102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202166:1
position: 202166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:202250-202318:1:exon

position:202250:1
position: 202250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202318:1
position: 202318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:203236-203314:1:exon

position:203236:1
position: 203236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:203314:1
position: 203314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:203980-204097:1:exon

position:203980:1
position: 203980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204097:1
position: 204097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:204569-204627:1:exon

position:204569:1
position: 204569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204627:1
position: 204627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:204762-204906:1:exon

position:204762:1
position: 204762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437616
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437616
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: calpain small subunit 1-like
translation: MFLVKGLLSGGGGGGGGEGGGLPGALGPMLGGLLSGGGGGGAGGAMRVLGGVISAISEAAAQYNPEPPPPRTHISTVDANESEEVRQFRRLFLQLAGDDMEVSPTELMNILNKVVTRHPDLKTDGFGLDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQGIYKQFDTDRSGTIGVQELPGAFEAAGFRLPPPLWGVLGRRYGDEGGNLDFDNFISCLVRLDAMFRAFKSLDRDGSGQIRVSLQEWLQLTMYS
SIO_010081: LOC117437616
subclass of: SO_0000673
so part of: LOC117437616
location: join(197825..197995,198595..198628,198734..198823,200168..200225,202102..202166,202250..202318,203236..203314,203980..204097,204569..204627,204762..204788)
location: region:197825-204788:1
so has part: feature:197825-197995:1:exon
so has part: feature:198595-198628:1:exon
so has part: feature:198734-198823:1:exon
so has part: feature:200168-200225:1:exon
so has part: feature:202102-202166:1:exon
so has part: feature:202250-202318:1:exon
so has part: feature:203236-203314:1:exon
so has part: feature:203980-204097:1:exon
so has part: feature:204569-204627:1:exon
so has part: feature:204762-204788:1:exon

XP_033928038.1
type: Protein
SIO_000068: ncbiprotein

position:197825:1
position: 197825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204788:1
position: 204788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:197825-197995:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:198595-198628:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:198734-198823:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:200168-200225:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:202102-202166:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:202250-202318:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:203236-203314:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:203980-204097:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:204569-204627:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:204762-204788:1:exon

LOC117437599
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437599
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 205140..214937
location: region:205140-214937:1
so has part: feature:205140-214937:1:exon
subclass of: SO_0000010

117437599
type: Gene
SIO_000068: ncbigene

position:205140:1
position: 205140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214937:1
position: 214937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205140-214937:1:exon

LOC117437599
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437599
product: serine/threonine-protein kinase 38-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 49% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072109.1
SIO_010081: LOC117437599
subclass of: SO_0000673
so part of: LOC117437599
location: join(205140..205148,206991..207453,209558..209649,210167..210250,212046..212141,213772..213920,214808..214937)
location: region:205140-214937:1
so has part: feature:205140-205148:1:exon
so has part: feature:206991-207453:1:exon
so has part: feature:209558-209649:1:exon
so has part: feature:210167-210250:1:exon
so has part: feature:212046-212141:1:exon
so has part: feature:213772-213920:1:exon
so has part: feature:214808-214937:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:205140-205148:1:exon

position:205148:1
position: 205148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:206991-207453:1:exon

position:206991:1
position: 206991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207453:1
position: 207453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:209558-209649:1:exon

position:209558:1
position: 209558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:209649:1
position: 209649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:210167-210250:1:exon

position:210167:1
position: 210167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210250:1
position: 210250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:212046-212141:1:exon

position:212046:1
position: 212046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:212141:1
position: 212141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:213772-213920:1:exon

position:213772:1
position: 213772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213920:1
position: 213920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:214808-214937:1:exon

position:214808:1
position: 214808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437599
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437599
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase 38-like
translation: MGPPWRRPQGAGTGSGRHAGGGGGAPGLGALLELLLGVVGGLRRRLRRGQREWDREWDREQREWDREQRNGTGNGTLNNGNPIGNNGNAEREIDRNIGNAIGNIGNVIGNIGNPIGNTGKRDREHREQREREHREREHREWDRDADSERHVREFLKWAEPWAAQLQELQLQRSDFEILKVIGRGAFSEVAVVKMKESGEVFAMKIMNKRDLVQRGEVSCFREERDVLVHGDRRWITRLHFAFQDPQCLFLVMEYCVGGDLLTLLSKFGDCLPLPLVRFYLAELVLAIDSVHRLGYVHRYVNGSPLLQALSVSRCRTTSPISLSLYTICTPYPSHTIAMGR
SIO_010081: LOC117437599
subclass of: SO_0000673
so part of: LOC117437599
location: join(205140..205148,206991..207453,209558..209649,210167..210250,212046..212141,213772..213920,214808..214937)
location: region:205140-214937:1
so has part: feature:205140-205148:1:exon
so has part: feature:206991-207453:1:exon
so has part: feature:209558-209649:1:exon
so has part: feature:210167-210250:1:exon
so has part: feature:212046-212141:1:exon
so has part: feature:213772-213920:1:exon
so has part: feature:214808-214937:1:exon

XP_033928000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:205140-205148:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:206991-207453:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:209558-209649:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:210167-210250:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:212046-212141:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:213772-213920:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:214808-214937:1:exon

LOC117437620
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437620
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(215258..221326)
location: region:215258-221326:-1
so has part: feature:215258-221326:-1:exon
subclass of: SO_0000010

117437620
type: Gene
SIO_000068: ncbigene

position:215258:-1
position: 215258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221326:-1
position: 221326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215258-221326:-1:exon

LOC117437620
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437620
product: RELB proto-oncogene, NF-kB subunit
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072153.1
SIO_010081: LOC117437620
subclass of: SO_0000673
so part of: LOC117437620
location: complement(join(215258..215496,216735..216839,217878..218009,218094..218185,219888..220045,221078..221326))
location: region:215258-221326:-1
so has part: feature:221078-221326:-1:exon
so has part: feature:219888-220045:-1:exon
so has part: feature:218094-218185:-1:exon
so has part: feature:217878-218009:-1:exon
so has part: feature:216735-216839:-1:exon
so has part: feature:215258-215496:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:221078-221326:-1:exon

position:221078:-1
position: 221078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:219888-220045:-1:exon

position:219888:-1
position: 219888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:220045:-1
position: 220045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:218094-218185:-1:exon

position:218094:-1
position: 218094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218185:-1
position: 218185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:217878-218009:-1:exon

position:217878:-1
position: 217878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218009:-1
position: 218009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:216735-216839:-1:exon

position:216735:-1
position: 216735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216839:-1
position: 216839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:215258-215496:-1:exon

position:215496:-1
position: 215496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437620
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor RelB
translation: MRFRYECEGRSAGSILGQSSTEASKTLPAIELLNCGAIPEVTVTACLVWKDWPHRVHPHGLVGKDCSNGLCQVVLRPQSNPRHSFSNLGIQCVKKKEIEAAIERKLQLGIDPFKAGALRNHQEVDMNVVRICFQASYRDPAGHTRHMGPVLSEPIFDKKSTNTSELRICRMNKESGPCTGGEELYLLCDKVQKEDIAVVFRTATWEARADFSQADVHRQVAIVLRTPPYRELRLRRPVEVEVVLQRLTDSACSRGLPFTYLPHSDGI
SIO_010081: LOC117437620
subclass of: SO_0000673
so part of: LOC117437620
location: complement(join(215273..215496,216735..216839,217878..218009,218094..218185,219888..220045,221078..221170))
location: region:215273-221170:-1
so has part: feature:221078-221170:-1:exon
so has part: feature:219888-220045:-1:exon
so has part: feature:218094-218185:-1:exon
so has part: feature:217878-218009:-1:exon
so has part: feature:216735-216839:-1:exon
so has part: feature:215273-215496:-1:exon

XP_033928044.1
type: Protein
SIO_000068: ncbiprotein

position:215273:-1
position: 215273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221170:-1
position: 221170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:221078-221170:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:219888-220045:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:218094-218185:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217878-218009:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:216735-216839:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:215273-215496:-1:exon

LOC117437621
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437621
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(221327..223429)
location: region:221327-223429:-1
so has part: feature:221327-223429:-1:exon
subclass of: SO_0000011

117437621
type: Gene
SIO_000068: ncbigene

position:221327:-1
position: 221327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:223429:-1
position: 223429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:221327-223429:-1:exon

LOC117437621
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13146
nc RNA class: lncRNA
gene: LOC117437621
product: uncharacterized LOC117437621
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_004550477.1
SIO_010081: LOC117437621
subclass of: SO_0000673
so part of: LOC117437621
location: complement(join(221327..221397,221591..221599,222254..222307,223359..223429))
location: region:221327-223429:-1
so has part: feature:223359-223429:-1:exon
so has part: feature:222254-222307:-1:exon
so has part: feature:221591-221599:-1:exon
so has part: feature:221327-221397:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:223359-223429:-1:exon

position:223359:-1
position: 223359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:222254-222307:-1:exon

position:222254:-1
position: 222254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:222307:-1
position: 222307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:221591-221599:-1:exon

position:221591:-1
position: 221591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221599:-1
position: 221599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:221327-221397:-1:exon

position:221397:-1
position: 221397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115947054
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC115947054
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 223547..234287
location: region:223547-234287:1
so has part: feature:223547-234287:1:exon
subclass of: SO_0000010

115947054
type: Gene
SIO_000068: ncbigene

position:223547:1
position: 223547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:234287:1
position: 234287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223547-234287:1:exon

LOC115947054
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC115947054
product: CLPTM1 regulator of GABA type A receptor forward trafficking
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 9 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072110.1
SIO_010081: LOC115947054
subclass of: SO_0000673
so part of: LOC115947054
location: join(223547..223589,223745..223845,225723..225846,225954..226112,226343..226460,226876..226961,229371..229491,229602..229846,230604..230697,231250..231440,231521..231616,232633..232768,232847..233014,233766..233883,234254..234287)
location: region:223547-234287:1
so has part: feature:223547-223589:1:exon
so has part: feature:223745-223845:1:exon
so has part: feature:225723-225846:1:exon
so has part: feature:225954-226112:1:exon
so has part: feature:226343-226460:1:exon
so has part: feature:226876-226961:1:exon
so has part: feature:229371-229491:1:exon
so has part: feature:229602-229846:1:exon
so has part: feature:230604-230697:1:exon
so has part: feature:231250-231440:1:exon
so has part: feature:231521-231616:1:exon
so has part: feature:232633-232768:1:exon
so has part: feature:232847-233014:1:exon
so has part: feature:233766-233883:1:exon
so has part: feature:234254-234287:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:223547-223589:1:exon

position:223589:1
position: 223589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:223745-223845:1:exon

position:223745:1
position: 223745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:223845:1
position: 223845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:225723-225846:1:exon

position:225723:1
position: 225723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:225846:1
position: 225846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:225954-226112:1:exon

position:225954:1
position: 225954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226112:1
position: 226112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:226343-226460:1:exon

position:226343:1
position: 226343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226460:1
position: 226460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:226876-226961:1:exon

position:226876:1
position: 226876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226961:1
position: 226961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:229371-229491:1:exon

position:229371:1
position: 229371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229491:1
position: 229491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:229602-229846:1:exon

position:229602:1
position: 229602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229846:1
position: 229846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:230604-230697:1:exon

position:230604:1
position: 230604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:230697:1
position: 230697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:231250-231440:1:exon

position:231250:1
position: 231250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:231440:1
position: 231440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:231521-231616:1:exon

position:231521:1
position: 231521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:231616:1
position: 231616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:232633-232768:1:exon

position:232633:1
position: 232633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:232768:1
position: 232768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:232847-233014:1:exon

position:232847:1
position: 232847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:233014:1
position: 233014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:233766-233883:1:exon

position:233766:1
position: 233766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:233883:1
position: 233883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:234254-234287:1:exon

position:234254:1
position: 234254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115947054
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC115947054
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cleft lip and palate transmembrane protein 1
translation: MAAPGAEVSGSGSAGEAAAAETQRQQAAPNAWQVIKGVVFRIFIIWAISSWFRRGPAPQEPNSTGGTPRAPSRNLFPKDTLMDLYVYISEHEHFTDFNVSSALFWQKRDLVYGDWTSGDNADGCYEHYGDVAISQSVQHNGSIYVHVYFTKSGFHPDPRQKSLYRRLATVHTSRMINKYKRRRFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNLTINMVDDHTPWVKGSVPPPLDQYVKFDAISGDYYPILYFNDYWNLQKDYFPINESLQRLPFRLSFCPLSLWRWQLYAAQSTKSPWNFLGEDLYEQSDEEQDSVKVALLETNPYLLALTIIVSIVHSIFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGVLQSLVVLLYILDNESNLVVQASVFIGLLIDLWKITKVMDVRLDRENKVAGMLPSISFKDKSTYVESSTKVYDDMAFRYLSWILFPLLGCYAVYSLLYLEHKGWYSWVLSMLYGFLLTFGFITMTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPMMYRIGCLRDDVVFFIYLYQRWIYRVDLTRVNEFGLSGADTVTPPPPPTQGLGVSNPPAQ
SIO_010081: LOC115947054
subclass of: SO_0000673
so part of: LOC115947054
location: join(223569..223589,223745..223845,225723..225846,225954..226112,226343..226460,226876..226961,229371..229491,229602..229846,230604..230697,231250..231440,231521..231616,232633..232768,232847..233014,233766..233883,234254..234287)
location: region:223569-234287:1
so has part: feature:223569-223589:1:exon
so has part: feature:223745-223845:1:exon
so has part: feature:225723-225846:1:exon
so has part: feature:225954-226112:1:exon
so has part: feature:226343-226460:1:exon
so has part: feature:226876-226961:1:exon
so has part: feature:229371-229491:1:exon
so has part: feature:229602-229846:1:exon
so has part: feature:230604-230697:1:exon
so has part: feature:231250-231440:1:exon
so has part: feature:231521-231616:1:exon
so has part: feature:232633-232768:1:exon
so has part: feature:232847-233014:1:exon
so has part: feature:233766-233883:1:exon
so has part: feature:234254-234287:1:exon

XP_033928001.1
type: Protein
SIO_000068: ncbiprotein

position:223569:1
position: 223569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223569-223589:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:223745-223845:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:225723-225846:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:225954-226112:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:226343-226460:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:226876-226961:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:229371-229491:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:229602-229846:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:230604-230697:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:231250-231440:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:231521-231616:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:232633-232768:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:232847-233014:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:233766-233883:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:234254-234287:1:exon

LOC117437624
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437624
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 235237..243426
location: region:235237-243426:1
so has part: feature:235237-243426:1:exon
subclass of: SO_0000010

117437624
type: Gene
SIO_000068: ncbigene

position:235237:1
position: 235237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243426:1
position: 243426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235237-243426:1:exon

LOC117437624
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437624
product: ERCC excision repair 1, endonuclease non-catalytic subunit
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_034072155.1
SIO_010081: LOC117437624
subclass of: SO_0000673
so part of: LOC117437624
location: join(235237..235262,236086..236211,238226..238329,239671..239770,241111..241187,241648..241747,243028..243099,243181..243249,243331..243426)
location: region:235237-243426:1
so has part: feature:235237-235262:1:exon
so has part: feature:236086-236211:1:exon
so has part: feature:238226-238329:1:exon
so has part: feature:239671-239770:1:exon
so has part: feature:241111-241187:1:exon
so has part: feature:241648-241747:1:exon
so has part: feature:243028-243099:1:exon
so has part: feature:243181-243249:1:exon
so has part: feature:243331-243426:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:235237-235262:1:exon

position:235262:1
position: 235262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:236086-236211:1:exon

position:236086:1
position: 236086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:236211:1
position: 236211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:238226-238329:1:exon

position:238226:1
position: 238226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:238329:1
position: 238329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:239671-239770:1:exon

position:239671:1
position: 239671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:239770:1
position: 239770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:241111-241187:1:exon

position:241111:1
position: 241111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241187:1
position: 241187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:241648-241747:1:exon

position:241648:1
position: 241648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241747:1
position: 241747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:243028-243099:1:exon

position:243028:1
position: 243028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243099:1
position: 243099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:243181-243249:1:exon

position:243181:1
position: 243181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243249:1
position: 243249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:243331-243426:1:exon

position:243331:1
position: 243331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437624
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437624
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA excision repair protein ERCC-1
translation: MAAAEEVPSVPPDPKAPDPGGVSTGAAPPQPQPMPRPRSSSIVVSPRQRGNPVLRFIRNVPWEYGDTVADYVLGQSSCALFLSLRYHHLHPDYIHQRLRELGRGFVLRVLLLQVDVKDPQRALMDLAKICVLSDCTLLLAWSPEEAARYLETFKAFEQKPPDLLRERRERGFVPTMSDCLTSIKAVNRTDALSLLSTFGSLAAMAAASKEDLSLCPGVGPQKAKRLFDVLHEPFLQTPK
SIO_010081: LOC117437624
subclass of: SO_0000673
so part of: LOC117437624
location: join(235245..235262,236086..236211,238226..238329,239671..239770,241111..241187,241648..241747,243028..243099,243181..243249,243331..243384)
location: region:235245-243384:1
so has part: feature:235245-235262:1:exon
so has part: feature:236086-236211:1:exon
so has part: feature:238226-238329:1:exon
so has part: feature:239671-239770:1:exon
so has part: feature:241111-241187:1:exon
so has part: feature:241648-241747:1:exon
so has part: feature:243028-243099:1:exon
so has part: feature:243181-243249:1:exon
so has part: feature:243331-243384:1:exon

XP_033928046.1
type: Protein
SIO_000068: ncbiprotein

position:235245:1
position: 235245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243384:1
position: 243384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235245-235262:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:236086-236211:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:238226-238329:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:239671-239770:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:241111-241187:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241648-241747:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:243028-243099:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:243181-243249:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:243331-243384:1:exon

LOC117437600
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437600
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(243826..245569)
location: region:243826-245569:-1
so has part: feature:243826-245569:-1:exon
subclass of: SO_0000010

117437600
type: Gene
SIO_000068: ncbigene

position:243826:-1
position: 243826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:245569:-1
position: 245569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243826-245569:-1:exon

LOC117437600
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437600
product: RNA polymerase I subunit G
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072111.1
SIO_010081: LOC117437600
subclass of: SO_0000673
so part of: LOC117437600
location: complement(join(243826..244212,244950..245070,245563..245569))
location: region:243826-245569:-1
so has part: feature:245563-245569:-1:exon
so has part: feature:244950-245070:-1:exon
so has part: feature:243826-244212:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:245563-245569:-1:exon

position:245563:-1
position: 245563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:244950-245070:-1:exon

position:244950:-1
position: 244950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:245070:-1
position: 245070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:243826-244212:-1:exon

position:244212:-1
position: 244212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437600
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-directed RNA polymerase I subunit RPA34
translation: MEGPLRFQCPPEFEAAPPPGPSLVGAAPELWLIRAPPDFNPESLEGCSVPLDHSVQFQPLPHGGAAEPSGSHCLYGARGAPGGAGGLLLLTPTAPSGALGCAPPLQGVLSITQSFGAPPEPPPGRRKRKKRKKEVMEEPPEGGRRGKHKEEAMG
SIO_010081: LOC117437600
subclass of: SO_0000673
so part of: LOC117437600
location: complement(join(243876..244212,244950..245070,245563..245569))
location: region:243876-245569:-1
so has part: feature:245563-245569:-1:exon
so has part: feature:244950-245070:-1:exon
so has part: feature:243876-244212:-1:exon

XP_033928002.1
type: Protein
SIO_000068: ncbiprotein

position:243876:-1
position: 243876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245563-245569:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:244950-245070:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:243876-244212:-1:exon

LOC117437601
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437601
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 245859..259971
location: region:245859-259971:1
so has part: feature:245859-259971:1:exon
subclass of: SO_0000010

117437601
type: Gene
SIO_000068: ncbigene

position:245859:1
position: 245859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:259971:1
position: 259971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245859-259971:1:exon

LOC117437601
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437601
product: protein phosphatase 1 regulatory subunit 13 like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 64% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072112.1
SIO_010081: LOC117437601
subclass of: SO_0000673
so part of: LOC117437601
location: join(245859..245920,248629..248691,249234..249383,250966..251064,251164..251237,252749..252833,253407..254201,254239..254291,255119..255256,256698..256831,257852..258018,258750..258949,259789..259971)
location: region:245859-259971:1
so has part: feature:245859-245920:1:exon
so has part: feature:248629-248691:1:exon
so has part: feature:249234-249383:1:exon
so has part: feature:250966-251064:1:exon
so has part: feature:251164-251237:1:exon
so has part: feature:252749-252833:1:exon
so has part: feature:253407-254201:1:exon
so has part: feature:254239-254291:1:exon
so has part: feature:255119-255256:1:exon
so has part: feature:256698-256831:1:exon
so has part: feature:257852-258018:1:exon
so has part: feature:258750-258949:1:exon
so has part: feature:259789-259971:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:245859-245920:1:exon

position:245920:1
position: 245920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:248629-248691:1:exon

position:248629:1
position: 248629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248691:1
position: 248691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:249234-249383:1:exon

position:249234:1
position: 249234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:249383:1
position: 249383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:250966-251064:1:exon

position:250966:1
position: 250966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:251064:1
position: 251064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:251164-251237:1:exon

position:251164:1
position: 251164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:251237:1
position: 251237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:252749-252833:1:exon

position:252749:1
position: 252749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:252833:1
position: 252833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:253407-254201:1:exon

position:253407:1
position: 253407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:254201:1
position: 254201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:254239-254291:1:exon

position:254239:1
position: 254239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:254291:1
position: 254291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:255119-255256:1:exon

position:255119:1
position: 255119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255256:1
position: 255256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:256698-256831:1:exon

position:256698:1
position: 256698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:256831:1
position: 256831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:257852-258018:1:exon

position:257852:1
position: 257852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:258018:1
position: 258018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:258750-258949:1:exon

position:258750:1
position: 258750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:258949:1
position: 258949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:259789-259971:1:exon

position:259789:1
position: 259789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437601
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437601
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: relA-associated inhibitor
translation: MASERLQSAQDLLDLTFQSLAMQHMDLKQVELDTAVAKVDELSRQLESLWSDGPGPPPRVGSVGMGIGDDSVLKRRPQKAWNESDLDLVYEKKPHSGGGFDRPSPSLGLMLSPWRESSLDGAGGGKDPYVGHSSTLPRNFKLPPGERRGPEGPFPSPPSRSSLPDPLLPDPQFPDAAAPLFLDPGLPDTAEPLRLREPQLPDTAEPPRLRLPQLPDAVAPRFLDQGLPDAAEPPRPRDRQLPDAAAPVLRDPQLPDTAEPPRLRDSVLPEAVAPVLREQQLPDTEPPRPRLPQLPDAAAPRLRDPVLPDAVAPVLPTPQLPDAADPPRPLSPTRLQPLLPPEAQRDPGFRALARSLAELPRPLKRRGSRELSVAPPPPRARQYRELIARLLHRAPPPHDVTVTTPTPAATPTALEPDPARRQSPPPEPPPDGPAPVPGLRSALRDPGSPRKRPGARVRMNPLVLLLDAALTGELDVVQRAVAELNDPSQPNDEGITALHNAICGAHYGIVEFLIASGADVNSPDSHGWTPLHCAASCNDTSICVALVRHGAAIFATTASDGSLAVEKCDPYREGYSDCYNYLTEVEQGMGVLNSGVVYALWDYSAALGDELSFREGEPVTVLRRQRPGDVDWWWGSLYGHEGFVPRNYFGLFPRLRPQRRKL
SIO_010081: LOC117437601
subclass of: SO_0000673
so part of: LOC117437601
location: join(248637..248691,249234..249383,250966..251064,251164..251237,252749..252833,253407..254201,254239..254291,255119..255256,256698..256831,257852..258018,258750..258949,259789..259827)
location: region:248637-259827:1
so has part: feature:248637-248691:1:exon
so has part: feature:249234-249383:1:exon
so has part: feature:250966-251064:1:exon
so has part: feature:251164-251237:1:exon
so has part: feature:252749-252833:1:exon
so has part: feature:253407-254201:1:exon
so has part: feature:254239-254291:1:exon
so has part: feature:255119-255256:1:exon
so has part: feature:256698-256831:1:exon
so has part: feature:257852-258018:1:exon
so has part: feature:258750-258949:1:exon
so has part: feature:259789-259827:1:exon

XP_033928003.1
type: Protein
SIO_000068: ncbiprotein

position:248637:1
position: 248637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:259827:1
position: 259827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248637-248691:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:249234-249383:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:250966-251064:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:251164-251237:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:252749-252833:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:253407-254201:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:254239-254291:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:255119-255256:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:256698-256831:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:257852-258018:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:258750-258949:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:259789-259827:1:exon

LOC117437594
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437594
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 250892..252834
location: region:250892-252834:1
so has part: feature:250892-252834:1:exon
subclass of: SO_0000011

117437594
type: Gene
SIO_000068: ncbigene

position:250892:1
position: 250892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:252834:1
position: 252834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250892-252834:1:exon

LOC117437594
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13146
nc RNA class: lncRNA
gene: LOC117437594
product: uncharacterized LOC117437594
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_004550474.1
SIO_010081: LOC117437594
subclass of: SO_0000673
so part of: LOC117437594
location: join(250892..251064,251164..251237,252749..252834)
location: region:250892-252834:1
so has part: feature:250892-251064:1:exon
so has part: feature:251164-251237:1:exon
so has part: feature:252749-252834:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:250892-251064:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:251164-251237:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:252749-252834:1:exon

LOC117437618
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437618
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 262908..276967
location: region:262908-276967:1
so has part: feature:262908-276967:1:exon
subclass of: SO_0000010

117437618
type: Gene
SIO_000068: ncbigene

position:262908:1
position: 262908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:276967:1
position: 276967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262908-276967:1:exon

LOC117437618
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437618
product: double PHD fingers 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072149.1
SIO_010081: LOC117437618
subclass of: SO_0000673
so part of: LOC117437618
location: join(262908..262939,265574..265734,267610..267709,267791..267926,269895..269984,271347..271425,272356..272481,272910..272960,273059..273181,274831..274943,276729..276810,276897..276967)
location: region:262908-276967:1
so has part: feature:262908-262939:1:exon
so has part: feature:265574-265734:1:exon
so has part: feature:267610-267709:1:exon
so has part: feature:267791-267926:1:exon
so has part: feature:269895-269984:1:exon
so has part: feature:271347-271425:1:exon
so has part: feature:272356-272481:1:exon
so has part: feature:272910-272960:1:exon
so has part: feature:273059-273181:1:exon
so has part: feature:274831-274943:1:exon
so has part: feature:276729-276810:1:exon
so has part: feature:276897-276967:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:262908-262939:1:exon

position:262939:1
position: 262939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:265574-265734:1:exon

position:265574:1
position: 265574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:265734:1
position: 265734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:267610-267709:1:exon

position:267610:1
position: 267610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:267709:1
position: 267709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:267791-267926:1:exon

position:267791:1
position: 267791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:267926:1
position: 267926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:269895-269984:1:exon

position:269895:1
position: 269895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:269984:1
position: 269984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:271347-271425:1:exon

position:271347:1
position: 271347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:271425:1
position: 271425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:272356-272481:1:exon

position:272356:1
position: 272356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:272481:1
position: 272481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:272910-272960:1:exon

position:272910:1
position: 272910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:272960:1
position: 272960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:273059-273181:1:exon

position:273059:1
position: 273059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:273181:1
position: 273181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:274831-274943:1:exon

position:274831:1
position: 274831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:274943:1
position: 274943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:276729-276810:1:exon

position:276729:1
position: 276729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:276810:1
position: 276810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:276897-276967:1:exon

position:276897:1
position: 276897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437618
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437618
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein neuro-d4
translation: MATALHKPLKCPGEEFYRAALEHCRSYNARLCAERGSRLPFLDNQTGVAQGNCYIWMERTHRRPGLSPGQLYTYPARCWRKKRRLNILEDPRLRPCELDCEVPLRKEGAPGLPEGPVLEALLSAEPMDRRGDTREEETALEGPKPPPGDFPHEPEGDELDDDPPRRKNKAKGKTCGLGAVRKRQEPPALEERDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEELGERPAPPRRNHHKQFYKELNWVPENQRRSTAGAPPPAPPPSGAPCGFCLGGSRRAPACPEELIACADCGRAGHPSCLQFTVSMAAAVRTYRWQCIECKSCSLCGTAENDDQLLFCDDCDRGYHMYCLSPPMAEPPEGSWSCHLCLRQLKDKASAFITLT
SIO_010081: LOC117437618
subclass of: SO_0000673
so part of: LOC117437618
location: join(262908..262939,265574..265734,267610..267709,267791..267926,269895..269984,271347..271425,272356..272481,272910..272960,273059..273181,274831..274943,276729..276810,276897..276967)
location: region:262908-276967:1
so has part: feature:262908-262939:1:exon
so has part: feature:265574-265734:1:exon
so has part: feature:267610-267709:1:exon
so has part: feature:267791-267926:1:exon
so has part: feature:269895-269984:1:exon
so has part: feature:271347-271425:1:exon
so has part: feature:272356-272481:1:exon
so has part: feature:272910-272960:1:exon
so has part: feature:273059-273181:1:exon
so has part: feature:274831-274943:1:exon
so has part: feature:276729-276810:1:exon
so has part: feature:276897-276967:1:exon

XP_033928040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:262908-262939:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:265574-265734:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:267610-267709:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:267791-267926:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:269895-269984:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:271347-271425:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:272356-272481:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:272910-272960:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:273059-273181:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:274831-274943:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:276729-276810:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:276897-276967:1:exon

LOC101878262
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC101878262
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(294992..313765)
location: region:294992-313765:-1
so has part: feature:294992-313765:-1:exon
subclass of: SO_0000010

101878262
type: Gene
SIO_000068: ncbigene

position:294992:-1
position: 294992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:313765:-1
position: 313765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:294992-313765:-1:exon

LOC101878262
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC101878262
product: signal induced proliferation associated 1 like 3
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_034072158.1
SIO_010081: LOC101878262
subclass of: SO_0000673
so part of: LOC101878262
location: complement(join(294992..295232,296264..296345,296638..296737,297351..297470,299234..299426,300225..300387,301349..301519,301637..301939,302015..302115,302197..302285,302391..302528,303998..304198,305812..306086,306803..307379,307541..307698,307799..307902,307993..308167,308236..308424,308507..308637,308722..310176,313257..313282,313706..313765))
location: region:294992-313765:-1
so has part: feature:313706-313765:-1:exon
so has part: feature:313257-313282:-1:exon
so has part: feature:308722-310176:-1:exon
so has part: feature:308507-308637:-1:exon
so has part: feature:308236-308424:-1:exon
so has part: feature:307993-308167:-1:exon
so has part: feature:307799-307902:-1:exon
so has part: feature:307541-307698:-1:exon
so has part: feature:306803-307379:-1:exon
so has part: feature:305812-306086:-1:exon
so has part: feature:303998-304198:-1:exon
so has part: feature:302391-302528:-1:exon
so has part: feature:302197-302285:-1:exon
so has part: feature:302015-302115:-1:exon
so has part: feature:301637-301939:-1:exon
so has part: feature:301349-301519:-1:exon
so has part: feature:300225-300387:-1:exon
so has part: feature:299234-299426:-1:exon
so has part: feature:297351-297470:-1:exon
so has part: feature:296638-296737:-1:exon
so has part: feature:296264-296345:-1:exon
so has part: feature:294992-295232:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:313706-313765:-1:exon

position:313706:-1
position: 313706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:313257-313282:-1:exon

position:313257:-1
position: 313257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:313282:-1
position: 313282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:308722-310176:-1:exon

position:308722:-1
position: 308722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:310176:-1
position: 310176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:308507-308637:-1:exon

position:308507:-1
position: 308507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:308637:-1
position: 308637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:308236-308424:-1:exon

position:308236:-1
position: 308236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:308424:-1
position: 308424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:307993-308167:-1:exon

position:307993:-1
position: 307993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:308167:-1
position: 308167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:307799-307902:-1:exon

position:307799:-1
position: 307799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:307902:-1
position: 307902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:307541-307698:-1:exon

position:307541:-1
position: 307541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:307698:-1
position: 307698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:306803-307379:-1:exon

position:306803:-1
position: 306803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:307379:-1
position: 307379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:305812-306086:-1:exon

position:305812:-1
position: 305812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:306086:-1
position: 306086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:303998-304198:-1:exon

position:303998:-1
position: 303998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:304198:-1
position: 304198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:302391-302528:-1:exon

position:302391:-1
position: 302391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:302528:-1
position: 302528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:302197-302285:-1:exon

position:302197:-1
position: 302197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:302285:-1
position: 302285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:302015-302115:-1:exon

position:302015:-1
position: 302015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:302115:-1
position: 302115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:301637-301939:-1:exon

position:301637:-1
position: 301637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:301939:-1
position: 301939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:301349-301519:-1:exon

position:301349:-1
position: 301349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:301519:-1
position: 301519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:300225-300387:-1:exon

position:300225:-1
position: 300225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:300387:-1
position: 300387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:299234-299426:-1:exon

position:299234:-1
position: 299234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:299426:-1
position: 299426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:297351-297470:-1:exon

position:297351:-1
position: 297351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:297470:-1
position: 297470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:296638-296737:-1:exon

position:296638:-1
position: 296638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:296737:-1
position: 296737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:296264-296345:-1:exon

position:296264:-1
position: 296264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:296345:-1
position: 296345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:294992-295232:-1:exon

position:295232:-1
position: 295232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101878262
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC101878262
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: signal-induced proliferation-associated 1-like protein 3
translation: MRTPMAPQHPFGYPMAPWAQHRPPHIQGGIPPGCSLCPKWGFGPVLPSGPPKRDPPKEPLREAAGCRDAPCVRNAAPIGQQQPPLVGVTGFKALQRLARRRSKDVEFQEGWFGSKGKGWAPLRHRSSSEVTLSECDPEEATEPRGAKLGAGGGIFREYGSTSSIDIQGISEQSFFEMLNEFRTKKPERRAASPERLGEAAFPMGSSTGIKADNRNGAREEALPQCKEKPRRRCPKGDASTESIFRKLRSTRNDAEPEEPRMPEPGRSWWCQKSFAHYDVQSILFDLNAVATNRVLVAQRRNTTTGASAASSGMGSDPAFPGAEDPNSKENLEHDLGDNTSNELLLSCPHFRNEIGGAGERNVSFSKASGASPVIPVSDGSFPEPVLDLRPTNAAISVLEVPKELQRNPNRLKHYSVEHVDLGARYYRDHFHGKEHSNYFGVDEKLGPVAVSIKREKLEDHKDHGPQYQYRLIFRTSELITLRGSILEDATPTTTKHGTVRGLPLKDALEYVIPELNIHCLRLALSTPKVTEQLLKLDEQGLCRRHKVGILYCKAGQSSEEEMYNNEEAGSAFEEFLMLLGEKVCLKAFSKYAAQLDTKTDSTGTHSLYTTYQDYEIMFHVSTMLPYTPNNRQQLLRKRHIGNDIVTIIFQEPGALPFTPQNIRSHFQHVFIIVRAHNPCTENVSYSVAVTRSKDVPSFGPPIPNGVTFRKSDVFREFLLAKVINAENAAHKSDKFHTMATRTRREYLKDLAENWVTNTPIDSSGKFNLISLASKKKEKTKARIGAEQHSAGAISWRVSALDFARGAEISCALGISNEFVVLLDLGAKEVVFNCFCGDVIGWTAEAATIKIFYGRGDHIFIRAGEGGAEDIKEIVQRLKVMTDGCDTVDMTLRRNGLGQLGFHVKYDGTVAEVEDYGFAWQAGLRQGSRLVEICKVAVVTLSHEQMIDLLRTSVTVKVVIVPPHEDGAPRRGWSECVALGSTEPREEPERGGCPPRPPYRSSAAWQWSSSASHSTSLGPTAPHGRPGKQAVLPPHGKRPLSFPETPHPSSSSSPSERPQPYRQPSGSFSAPGSTFTRYKPSPERFMAASEPPDGDSSSGGVSSHESTMERHNPEPLWHVPAQPRLPTGRRSSKQEPAGMDSPKRHSKGEAPYSSHSSTTTLSSTASSDERWFDIPDPNDGTEFPDPFPKGSSNDSGIDTPKPPRPLSQRDKGPKAIVAPGDDATPPRGIHHPPAPATGTKLGPPPQPSSNPRMGYPGYGTPTTEAPRGGPQLSASIPKSFFSKQPVRNKQATGWKRAEEKPEPQKQVEATPKNVFGQPRLRASLRDLRSPRRTYKSTIEDDLKKLIIMDSTSPEPERAPTPPKGLQRTLSDESLCGGRRDPSYPSGSPVLDAEGSFGSTYPSSTLPNRRQHPATTNGGLHDKKGPISASELSLRRVDPGMMPLPDTATGLEWASLVNAAKAYEVQRAVSLFSLTEPVLSPDPPQPPERPRGGAPPISPPTPLDLPEKVSQLEAMLKQLHSDLQKEKQDKVVLQAEVANLRHNNRRLQQESHSAARQLRRFARIFSGTVDKEEL
SIO_010081: LOC101878262
subclass of: SO_0000673
so part of: LOC101878262
location: complement(join(295083..295232,296264..296345,296638..296737,297351..297470,299234..299426,300225..300387,301349..301519,301637..301939,302015..302115,302197..302285,302391..302528,303998..304198,305812..306086,306803..307379,307541..307698,307799..307902,307993..308167,308236..308424,308507..308637,308722..310021))
location: region:295083-310021:-1
so has part: feature:308722-310021:-1:exon
so has part: feature:308507-308637:-1:exon
so has part: feature:308236-308424:-1:exon
so has part: feature:307993-308167:-1:exon
so has part: feature:307799-307902:-1:exon
so has part: feature:307541-307698:-1:exon
so has part: feature:306803-307379:-1:exon
so has part: feature:305812-306086:-1:exon
so has part: feature:303998-304198:-1:exon
so has part: feature:302391-302528:-1:exon
so has part: feature:302197-302285:-1:exon
so has part: feature:302015-302115:-1:exon
so has part: feature:301637-301939:-1:exon
so has part: feature:301349-301519:-1:exon
so has part: feature:300225-300387:-1:exon
so has part: feature:299234-299426:-1:exon
so has part: feature:297351-297470:-1:exon
so has part: feature:296638-296737:-1:exon
so has part: feature:296264-296345:-1:exon
so has part: feature:295083-295232:-1:exon

XP_033928049.1
type: Protein
SIO_000068: ncbiprotein

position:295083:-1
position: 295083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:310021:-1
position: 310021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308722-310021:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:308507-308637:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:308236-308424:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:307993-308167:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:307799-307902:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:307541-307698:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:306803-307379:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:305812-306086:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:303998-304198:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:302391-302528:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:302197-302285:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:302015-302115:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:301637-301939:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:301349-301519:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:300225-300387:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:299234-299426:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:297351-297470:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:296638-296737:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:296264-296345:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:295083-295232:-1:exon

LOC101878434
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC101878434
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 316307..339075
location: region:316307-339075:1
so has part: feature:316307-339075:1:exon
subclass of: SO_0000010

101878434
type: Gene
SIO_000068: ncbigene

position:316307:1
position: 316307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:339075:1
position: 339075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316307-339075:1:exon

LOC101878434
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC101878434
product: BRD4 interacting chromatin remodeling complex associated protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_034072196.1
SIO_010081: LOC101878434
subclass of: SO_0000673
so part of: LOC101878434
location: join(316307..316425,324717..324762,325119..325161,325651..325716,326511..328409,331593..331737,332877..333004,333496..333621,334830..334888,334970..335118,336419..336513,337728..337830,337948..339075)
location: region:316307-339075:1
so has part: feature:316307-316425:1:exon
so has part: feature:324717-324762:1:exon
so has part: feature:325119-325161:1:exon
so has part: feature:325651-325716:1:exon
so has part: feature:326511-328409:1:exon
so has part: feature:331593-331737:1:exon
so has part: feature:332877-333004:1:exon
so has part: feature:333496-333621:1:exon
so has part: feature:334830-334888:1:exon
so has part: feature:334970-335118:1:exon
so has part: feature:336419-336513:1:exon
so has part: feature:337728-337830:1:exon
so has part: feature:337948-339075:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:316307-316425:1:exon

position:316425:1
position: 316425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:324717-324762:1:exon

position:324717:1
position: 324717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:324762:1
position: 324762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:325119-325161:1:exon

position:325119:1
position: 325119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:325161:1
position: 325161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:325651-325716:1:exon

position:325651:1
position: 325651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:325716:1
position: 325716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:326511-328409:1:exon

position:326511:1
position: 326511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:328409:1
position: 328409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:331593-331737:1:exon

position:331593:1
position: 331593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:331737:1
position: 331737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:332877-333004:1:exon

position:332877:1
position: 332877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:333004:1
position: 333004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:333496-333621:1:exon

position:333496:1
position: 333496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:333621:1
position: 333621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:334830-334888:1:exon

position:334830:1
position: 334830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:334888:1
position: 334888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:334970-335118:1:exon

position:334970:1
position: 334970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:335118:1
position: 335118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:336419-336513:1:exon

position:336419:1
position: 336419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:336513:1
position: 336513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:337728-337830:1:exon

position:337728:1
position: 337728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:337830:1
position: 337830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:337948-339075:1:exon

position:337948:1
position: 337948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101878434
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC101878434
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: BRD4-interacting chromatin-remodeling complex-associated protein
translation: MDDEDGRCLLDVICDPQALNDFLHGSEKIDSDDLLDNTGDAASSFFEGAGLHVQEASGNHLNTEQPQPAASVDLDFLEDDILGSPSSTGANLANSEQPCDILQQSLQEANITEQTLEAEAELDLGSFQLPTLQPVVQATSDGTPQIFSSGADLIGLQPPTVLAHQALVQQSVGADVVNKAISVQPFLQQVGLGNVTIQPISNLQGLPNGSPSGTLGIGPIQVVGQQVMAINQPAQQIIAKQVQPSQVATMPVGSYITQPAPEQQQVTLASTGVSPQGTGLVIQKNLPTVATTTLNGNSMFGSVAGPQGSQPLTVTSNLSSPLVQAQNVIIHRTPTPIQPKPAGVLQQKLYQITPKPFASNNTTLTIQNEAALQQQKAQQNLTFMASKPGQNVVLSGFPQGLPANVFKQPQPQQQALNKAMSVHLLNQGSSIVIPAQHVPQAMLQGQNQFLLPSQLTGASTVQLPQQLSALQANMGGQILTTSHAGGQAHIITSQGPGGQLLTNPALPAQLLTNQNITSPLNLGQVLTSQSAHGTAHILSAPIQLQAGQVGQPALFQMPVSLASTLSSQSQPVIQGVTLPNQVAMLNATEGMGQAVSIQPPAASTSQSPGLGQGQANTGTGLMAGTEPAPILTVQTSQAAPLQLNVPAAAPSQAPGASQASPTLASSPEKIILNQDSMQMFLQQGIILQPKQPPASQAPTALAPFGTSAPSVLVSGPGQPVTVTTTTTTATAGITAPAPAESKTFASVSTPIPAGKGAVAQGKPGTPLAIQQPVQPKPGVISSVSGLSLGKGPLQIQVVGKGIPQLVPSVPASGQQLFDTKLALKKTPSLQPSKEACFLEQLHKHQGSVLHPDYKTAFRSFDDALQRLLPYHVYQGMLPSAHDYRKVDEEFEVVSTQLLRRTQAMLNKYRLLLLEESRRVSPSAEMVMIDRMFIQEEKTTLALDKQLAKEKPDEYVSSSSRAPGIPTSSSSSSSSSSSVSSTTPTPESLKAPPAPPPLVHPTKLVIKHSGGSPSVTWAKASPIPLDGDEDALPSRSKPPIKTYEARSRIGLKLKIKQEAGLSKVVHNTALDPVHQPQSACRVIRSAGATMNGSVDHGMSGMSDRKPMVTYCRLPLRKTYRENVDAFPGDKGPDPGTKGTKAEVIPTGSSGKQEEGSRSVITSHRSRDKPTEKSSKLIPPKPQDSSSGLMKELAEVEEEFYHGMIKAEPPDEGSGPELRWEAAFPAAKRRKSESLEVDNASFSSDSPQDDALHEHLQSAIDSILNLQQHPGASQSIRTPSSSYNSSSSPFSSPVHRTDTLVPAPNHNGGLGARTLTR
SIO_010081: LOC101878434
subclass of: SO_0000673
so part of: LOC101878434
location: join(324722..324762,325119..325161,325651..325716,326511..328409,331593..331737,332877..333004,333496..333621,334830..334888,334970..335118,336419..336513,337728..337830,337948..339041)
location: region:324722-339041:1
so has part: feature:324722-324762:1:exon
so has part: feature:325119-325161:1:exon
so has part: feature:325651-325716:1:exon
so has part: feature:326511-328409:1:exon
so has part: feature:331593-331737:1:exon
so has part: feature:332877-333004:1:exon
so has part: feature:333496-333621:1:exon
so has part: feature:334830-334888:1:exon
so has part: feature:334970-335118:1:exon
so has part: feature:336419-336513:1:exon
so has part: feature:337728-337830:1:exon
so has part: feature:337948-339041:1:exon

XP_033928087.1
type: Protein
SIO_000068: ncbiprotein

position:324722:1
position: 324722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:339041:1
position: 339041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:324722-324762:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:325119-325161:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:325651-325716:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:326511-328409:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:331593-331737:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:332877-333004:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:333496-333621:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:334830-334888:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:334970-335118:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:336419-336513:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:337728-337830:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:337948-339041:1:exon

LOC117437650
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437650
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 342773..351368
location: region:342773-351368:1
so has part: feature:342773-351368:1:exon
subclass of: SO_0000010

117437650
type: Gene
SIO_000068: ncbigene

position:342773:1
position: 342773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:351368:1
position: 351368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:342773-351368:1:exon

LOC117437650
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437650
product: EH domain containing 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072188.1
SIO_010081: LOC117437650
subclass of: SO_0000673
so part of: LOC117437650
location: join(342773..343487,345000..345097,348225..348637,349560..349724,350543..351368)
location: region:342773-351368:1
so has part: feature:342773-343487:1:exon
so has part: feature:345000-345097:1:exon
so has part: feature:348225-348637:1:exon
so has part: feature:349560-349724:1:exon
so has part: feature:350543-351368:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:342773-343487:1:exon

position:343487:1
position: 343487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:345000-345097:1:exon

position:345000:1
position: 345000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:345097:1
position: 345097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:348225-348637:1:exon

position:348225:1
position: 348225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:348637:1
position: 348637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:349560-349724:1:exon

position:349560:1
position: 349560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:349724:1
position: 349724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:350543-351368:1:exon

position:350543:1
position: 350543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437650
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: EH domain-containing protein 2
translation: MFSWMKKQAKKGPEAAGTVRAGLKKLYKKKLFPLEEASRFHDFHSPALEEADFDTKPMVLVMGQYSTGKTTFIRYLLEQDIPGSRIGPEPTTDSFVAIMHGDTEGIIPGNALVVDPNKPFRKLHPFGNAFLNRFHCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLQWFAERVDLIILLFDSHKLEISDEFSEAIRALKGHEDKIRVLLNKADAVETQQLMRVYGALLWSLGKVFDTPEVLRVFLGSFWSEPLVIPDNRSLFELEEQDLFQEIQSLPRHAALRKLNDLVKRARLLRVHVHILARLRKEMPSVFGKEAKKKQLISQLPMLFSRIQLEQHIPAGDFPDCARMQELLLVQDFSRLPVLKPRVLEALDELLTSDIAALMPLLRREELEAPEGSVQGGAFEGTRQGPFHAEEEEEEEEGEWAVMKDKAKYDEIFYGLAPMGGKLSGRRAKGWMVSSNLPSSVLGRIWKLSDVDRDGMLDAEEFALAGHLIGAKLEGRGLPTDLPPRLVPPSKRRQKGSAE
SIO_010081: LOC117437650
subclass of: SO_0000673
so part of: LOC117437650
location: join(343090..343487,345000..345097,348225..348637,349560..349724,350543..351067)
location: region:343090-351067:1
so has part: feature:343090-343487:1:exon
so has part: feature:345000-345097:1:exon
so has part: feature:348225-348637:1:exon
so has part: feature:349560-349724:1:exon
so has part: feature:350543-351067:1:exon

XP_033928079.1
type: Protein
SIO_000068: ncbiprotein

position:343090:1
position: 343090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:351067:1
position: 351067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343090-343487:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:345000-345097:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:348225-348637:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:349560-349724:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:350543-351067:1:exon

LOC117437611
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437611
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 353127..362928
location: region:353127-362928:1
so has part: feature:353127-362928:1:exon
subclass of: SO_0000010

117437611
type: Gene
SIO_000068: ncbigene

position:353127:1
position: 353127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362928:1
position: 362928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:353127-362928:1:exon

LOC117437611
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437611
product: NOP53 ribosome biogenesis factor
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072139.1
SIO_010081: LOC117437611
subclass of: SO_0000673
so part of: LOC117437611
location: join(353127..353340,353695..353765,354240..354318,356112..356320,356973..357043,357556..357648,358566..358670,358781..358942,360696..360871,361774..361840,362698..362774,362868..362928)
location: region:353127-362928:1
so has part: feature:353127-353340:1:exon
so has part: feature:353695-353765:1:exon
so has part: feature:354240-354318:1:exon
so has part: feature:356112-356320:1:exon
so has part: feature:356973-357043:1:exon
so has part: feature:357556-357648:1:exon
so has part: feature:358566-358670:1:exon
so has part: feature:358781-358942:1:exon
so has part: feature:360696-360871:1:exon
so has part: feature:361774-361840:1:exon
so has part: feature:362698-362774:1:exon
so has part: feature:362868-362928:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:353127-353340:1:exon

position:353340:1
position: 353340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:353695-353765:1:exon

position:353695:1
position: 353695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:353765:1
position: 353765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:354240-354318:1:exon

position:354240:1
position: 354240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:354318:1
position: 354318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:356112-356320:1:exon

position:356112:1
position: 356112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:356320:1
position: 356320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:356973-357043:1:exon

position:356973:1
position: 356973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:357043:1
position: 357043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:357556-357648:1:exon

position:357556:1
position: 357556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:357648:1
position: 357648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:358566-358670:1:exon

position:358566:1
position: 358566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:358670:1
position: 358670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:358781-358942:1:exon

position:358781:1
position: 358781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:358942:1
position: 358942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:360696-360871:1:exon

position:360696:1
position: 360696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:360871:1
position: 360871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:361774-361840:1:exon

position:361774:1
position: 361774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:361840:1
position: 361840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:362698-362774:1:exon

position:362698:1
position: 362698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362774:1
position: 362774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:362868-362928:1:exon

position:362868:1
position: 362868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437611
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437611
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosome biogenesis protein NOP53
translation: MAAAEASASFLGLGPGSRDPSSGSRRRSRGPRNRKKGWKRLSGPEAQLGREVSDFLEEVASEQRITGGLISEQPDEGLFFLDTGNATKDKGRPSPPQKPLHVDLVLQPLSKVPAPKDILAHQIPNARKLRHHREFWAKQAAKGRFPREERRLRSRLRRDKPPPAPPHREKGRSDPQRDFYDLWGAHNPLDQALVGQDPWFLQQTKKAKIKRPTRLQPLPEVPALEVIDGGGSYNPAFGEHQALLLRAHEEELKKQREEQKLERRLKIPDGIPLPTPETVLQEQCEGLLEEEEEEEEEEQDKEVEPREAPKGSKGKKTEQQRRREKEARALAQQQRREAAARRARQELFRLRALRRHVTRAEAELRRRRALRAAARAAERSRPRRVGRLRYQAPALDVQLSHEIPECLRGLKPEGSILRDRFKSFQKRNMIEPRERAKFKRRYRLKYVEKRAFRAVT
SIO_010081: LOC117437611
subclass of: SO_0000673
so part of: LOC117437611
location: join(353141..353340,353695..353765,354240..354318,356112..356320,356973..357043,357556..357648,358566..358670,358781..358942,360696..360871,361774..361840,362698..362774,362868..362928)
location: region:353141-362928:1
so has part: feature:353141-353340:1:exon
so has part: feature:353695-353765:1:exon
so has part: feature:354240-354318:1:exon
so has part: feature:356112-356320:1:exon
so has part: feature:356973-357043:1:exon
so has part: feature:357556-357648:1:exon
so has part: feature:358566-358670:1:exon
so has part: feature:358781-358942:1:exon
so has part: feature:360696-360871:1:exon
so has part: feature:361774-361840:1:exon
so has part: feature:362698-362774:1:exon
so has part: feature:362868-362928:1:exon

XP_033928030.1
type: Protein
SIO_000068: ncbiprotein

position:353141:1
position: 353141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:353141-353340:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:353695-353765:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:354240-354318:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:356112-356320:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:356973-357043:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:357556-357648:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:358566-358670:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:358781-358942:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:360696-360871:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:361774-361840:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:362698-362774:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:362868-362928:1:exon

LOC117437625
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437625
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 363939..366812
location: region:363939-366812:1
so has part: feature:363939-366812:1:exon
subclass of: SO_0000010

117437625
type: Gene
SIO_000068: ncbigene

position:363939:1
position: 363939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:366812:1
position: 366812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363939-366812:1:exon

LOC117437625
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437625
product: selenoprotein W
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072156.1
SIO_010081: LOC117437625
subclass of: SO_0000673
so part of: LOC117437625
location: join(363939..364011,364682..364706,364841..364894,365649..365723,366366..366812)
location: region:363939-366812:1
so has part: feature:363939-364011:1:exon
so has part: feature:364682-364706:1:exon
so has part: feature:364841-364894:1:exon
so has part: feature:365649-365723:1:exon
so has part: feature:366366-366812:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:363939-364011:1:exon

position:364011:1
position: 364011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:364682-364706:1:exon

position:364682:1
position: 364682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:364706:1
position: 364706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:364841-364894:1:exon

position:364841:1
position: 364841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:364894:1
position: 364894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:365649-365723:1:exon

position:365649:1
position: 365649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:365723:1
position: 365723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:366366-366812:1:exon

position:366366:1
position: 366366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437625
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:364689..364691,aa:Sec)
product: selenoprotein W
translation: MAPKLRVSVVYCGAUGYKPKFQALKQELERRFPGALEVQGQGTPEVTGWFEVTVGGRLVHSKKAGDGFVDSEAKLQRILSSISALLPPM
SIO_010081: LOC117437625
subclass of: SO_0000673
so part of: LOC117437625
location: join(363977..364011,364682..364706,364841..364894,365649..365723,366366..366446)
location: region:363977-366446:1
so has part: feature:363977-364011:1:exon
so has part: feature:364682-364706:1:exon
so has part: feature:364841-364894:1:exon
so has part: feature:365649-365723:1:exon
so has part: feature:366366-366446:1:exon

XP_033928047.1
type: Protein
SIO_000068: ncbiprotein

position:363977:1
position: 363977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:366446:1
position: 366446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363977-364011:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:364682-364706:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:364841-364894:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:365649-365723:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:366366-366446:1:exon

LOC117437649
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437649
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 367396..369238
location: region:367396-369238:1
so has part: feature:367396-369238:1:exon

117437649
type: Gene
SIO_000068: ncbigene

position:367396:1
position: 367396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:369238:1
position: 369238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367396-369238:1:exon

LOC117437649
type: Exon
subclass of: SO_0000147
RO_0002162: 13146
gene: LOC117437649
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 130 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
pseudo: true
SIO_010081: LOC117437649
subclass of: SO_0000673
so part of: LOC117437649
location: 367396..367853
location: region:367396-367853:1
so has part: feature:367396-367853:1:exon

position:367853:1
position: 367853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367396-367853:1:exon

LOC117437649
type: Exon
subclass of: SO_0000147
RO_0002162: 13146
gene: LOC117437649
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 130 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
pseudo: true
SIO_010081: LOC117437649
subclass of: SO_0000673
so part of: LOC117437649
location: 368898..369238
location: region:368898-369238:1
so has part: feature:368898-369238:1:exon

position:368898:1
position: 368898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:368898-369238:1:exon

LOC117437648
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437648
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 370233..373208
location: region:370233-373208:1
so has part: feature:370233-373208:1:exon
subclass of: SO_0000010

117437648
type: Gene
SIO_000068: ncbigene

position:370233:1
position: 370233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:373208:1
position: 373208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:370233-373208:1:exon

LOC117437648
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437648
product: distal membrane arm assembly complex 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072187.1
SIO_010081: LOC117437648
subclass of: SO_0000673
so part of: LOC117437648
location: join(370233..370331,370441..370550,371689..371769,371858..371991,372798..372960,373048..373208)
location: region:370233-373208:1
so has part: feature:370233-370331:1:exon
so has part: feature:370441-370550:1:exon
so has part: feature:371689-371769:1:exon
so has part: feature:371858-371991:1:exon
so has part: feature:372798-372960:1:exon
so has part: feature:373048-373208:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:370233-370331:1:exon

position:370331:1
position: 370331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:370441-370550:1:exon

position:370441:1
position: 370441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:370550:1
position: 370550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:371689-371769:1:exon

position:371689:1
position: 371689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:371769:1
position: 371769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:371858-371991:1:exon

position:371858:1
position: 371858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:371991:1
position: 371991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:372798-372960:1:exon

position:372798:1
position: 372798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:372960:1
position: 372960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:373048-373208:1:exon

position:373048:1
position: 373048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437648
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437648
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: distal membrane-arm assembly complex protein 2
translation: MAAPTAGPVRRLLQGLSRWFYDAEAALDWAERVRRVRLHRKNATHMHLKDIYGPNVAAAAFTLSLGGSVRYEGQEQWLRPHGPWQERVLQLRSVPVWGLDLSACPVTYSGLGSLEPLPHLAHLDLSACPHVDDWTVARMRALAPSLRSLSLSRCPRVTERGLATLHHFRELRHLDVSGLNVPSPGLVRILLEEMLPGCRIVGMELDTPPKGTT
SIO_010081: LOC117437648
subclass of: SO_0000673
so part of: LOC117437648
location: join(370314..370331,370441..370550,371689..371769,371858..371991,372798..372960,373048..373183)
location: region:370314-373183:1
so has part: feature:370314-370331:1:exon
so has part: feature:370441-370550:1:exon
so has part: feature:371689-371769:1:exon
so has part: feature:371858-371991:1:exon
so has part: feature:372798-372960:1:exon
so has part: feature:373048-373183:1:exon

XP_033928078.1
type: Protein
SIO_000068: ncbiprotein

position:370314:1
position: 370314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:373183:1
position: 373183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:370314-370331:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:370441-370550:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:371689-371769:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:371858-371991:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:372798-372960:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:373048-373183:1:exon

LOC117437656
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437656
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(375255..387302)
location: region:375255-387302:-1
so has part: feature:375255-387302:-1:exon
subclass of: SO_0000010

117437656
type: Gene
SIO_000068: ncbigene

position:375255:-1
position: 375255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:387302:-1
position: 387302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:375255-387302:-1:exon

LOC117437656
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437656
product: branched chain keto acid dehydrogenase E1 subunit alpha, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_034072199.1
SIO_010081: LOC117437656
subclass of: SO_0000673
so part of: LOC117437656
location: complement(join(375255..375313,375822..376010,377115..377286,378718..378859,382054..382260,383996..384157,384806..384914,385105..385191,385919..386071,387224..387302))
location: region:375255-387302:-1
so has part: feature:387224-387302:-1:exon
so has part: feature:385919-386071:-1:exon
so has part: feature:385105-385191:-1:exon
so has part: feature:384806-384914:-1:exon
so has part: feature:383996-384157:-1:exon
so has part: feature:382054-382260:-1:exon
so has part: feature:378718-378859:-1:exon
so has part: feature:377115-377286:-1:exon
so has part: feature:375822-376010:-1:exon
so has part: feature:375255-375313:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:387224-387302:-1:exon

position:387224:-1
position: 387224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:385919-386071:-1:exon

position:385919:-1
position: 385919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:386071:-1
position: 386071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:385105-385191:-1:exon

position:385105:-1
position: 385105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:385191:-1
position: 385191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:384806-384914:-1:exon

position:384806:-1
position: 384806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:384914:-1
position: 384914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:383996-384157:-1:exon

position:383996:-1
position: 383996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:384157:-1
position: 384157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:382054-382260:-1:exon

position:382054:-1
position: 382054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:382260:-1
position: 382260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:378718-378859:-1:exon

position:378718:-1
position: 378718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:378859:-1
position: 378859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:377115-377286:-1:exon

position:377115:-1
position: 377115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:377286:-1
position: 377286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:375822-376010:-1:exon

position:375822:-1
position: 375822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:376010:-1
position: 376010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:375255-375313:-1:exon

position:375313:-1
position: 375313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437656
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437656
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial isoform X2
translation: MAAMAALRAMRARVLRATVRGYGTAEFPQEKPQFPGASAEFVERLEFIQPNVLSGIPVYRVMDRQGQILQQSEDPQLPKELVLKLYKTMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDDNDLVFGQYREAGVLMYRGYPLELFMAQCYGNSRDPGKGRQMPVHYGCSQRHFVTISSPLATQIPQAVGAAYAIKRADANRAVICYFGEGAASEGDAHAGFNFAATLECPILFFCRNNGYAISTPTAEQYRGDGIAARGPGYGLLSIRVDGNDVFAVYKATREARRRAVAENRPVLIEAMTYRIGHHSTSDDSSAYRSVDEVDYWDKRDHPISRLRHFLLRKGWWDEEQEKGWRKSSRKMVLESFTAAERLPKPSPHLLFTDVYRELPLHLRRQQGALLQHLRRYRQHYPMELFESGGEPPMEEAEETQVQP
SIO_010081: LOC117437656
subclass of: SO_0000673
so part of: LOC117437656
location: complement(join(375284..375313,375822..376010,377115..377286,378718..378859,382054..382260,383996..384157,384806..384914,385105..385191,385919..386071,387224..387298))
location: region:375284-387298:-1
so has part: feature:387224-387298:-1:exon
so has part: feature:385919-386071:-1:exon
so has part: feature:385105-385191:-1:exon
so has part: feature:384806-384914:-1:exon
so has part: feature:383996-384157:-1:exon
so has part: feature:382054-382260:-1:exon
so has part: feature:378718-378859:-1:exon
so has part: feature:377115-377286:-1:exon
so has part: feature:375822-376010:-1:exon
so has part: feature:375284-375313:-1:exon

XP_033928090.1
type: Protein
SIO_000068: ncbiprotein

position:375284:-1
position: 375284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:387298:-1
position: 387298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:387224-387298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:385919-386071:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:385105-385191:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:384806-384914:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:383996-384157:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:382054-382260:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:378718-378859:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:377115-377286:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:375822-376010:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:375284-375313:-1:exon

LOC117437656
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437656
product: branched chain keto acid dehydrogenase E1 subunit alpha, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072198.1
SIO_010081: LOC117437656
subclass of: SO_0000673
so part of: LOC117437656
location: complement(join(375724..376010,377115..377286,378718..378859,382054..382260,383996..384157,384806..384914,385105..385191,385919..386071,387224..387302))
location: region:375724-387302:-1
so has part: feature:387224-387302:-1:exon
so has part: feature:385919-386071:-1:exon
so has part: feature:385105-385191:-1:exon
so has part: feature:384806-384914:-1:exon
so has part: feature:383996-384157:-1:exon
so has part: feature:382054-382260:-1:exon
so has part: feature:378718-378859:-1:exon
so has part: feature:377115-377286:-1:exon
so has part: feature:375724-376010:-1:exon

position:375724:-1
position: 375724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:387224-387302:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:385919-386071:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:385105-385191:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:384806-384914:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:383996-384157:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:382054-382260:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:378718-378859:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:377115-377286:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:375724-376010:-1:exon

LOC117437656
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437656
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial isoform X1
translation: MAAMAALRAMRARVLRATVRGYGTAEFPQEKPQFPGASAEFVERLEFIQPNVLSGIPVYRVMDRQGQILQQSEDPQLPKELVLKLYKTMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDDNDLVFGQYREAGVLMYRGYPLELFMAQCYGNSRDPGKGRQMPVHYGCSQRHFVTISSPLATQIPQAVGAAYAIKRADANRAVICYFGEGAASEGDAHAGFNFAATLECPILFFCRNNGYAISTPTAEQYRGDGIAARGPGYGLLSIRVDGNDVFAVYKATREARRRAVAENRPVLIEAMTYRIGHHSTSDDSSAYRSVDEVDYWDKRDHPISRLRHFLLRKGWWDEEQEKGWRKSSRKMVLESFTAAERLPKPSPHLLFTDVYRELPLHLRRQQGALLQHLRRYRQHYPMELFESGGEPPMEEAEETQVQP
SIO_010081: LOC117437656
subclass of: SO_0000673
so part of: LOC117437656
location: complement(join(375792..376010,377115..377286,378718..378859,382054..382260,383996..384157,384806..384914,385105..385191,385919..386071,387224..387298))
location: region:375792-387298:-1
so has part: feature:387224-387298:-1:exon
so has part: feature:385919-386071:-1:exon
so has part: feature:385105-385191:-1:exon
so has part: feature:384806-384914:-1:exon
so has part: feature:383996-384157:-1:exon
so has part: feature:382054-382260:-1:exon
so has part: feature:378718-378859:-1:exon
so has part: feature:377115-377286:-1:exon
so has part: feature:375792-376010:-1:exon

XP_033928089.1
type: Protein
SIO_000068: ncbiprotein

position:375792:-1
position: 375792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:387224-387298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:385919-386071:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:385105-385191:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:384806-384914:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:383996-384157:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:382054-382260:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:378718-378859:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:377115-377286:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:375792-376010:-1:exon

LOC117437657
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437657
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 387389..390382
location: region:387389-390382:1
so has part: feature:387389-390382:1:exon
subclass of: SO_0000010

117437657
type: Gene
SIO_000068: ncbigene

position:387389:1
position: 387389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:390382:1
position: 390382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:387389-390382:1:exon

LOC117437657
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437657
product: exosome component 5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072200.1
SIO_010081: LOC117437657
subclass of: SO_0000673
so part of: LOC117437657
location: join(387389..387515,387593..387706,387782..387903,388808..388948,389020..389109,390200..390382)
location: region:387389-390382:1
so has part: feature:387389-387515:1:exon
so has part: feature:387593-387706:1:exon
so has part: feature:387782-387903:1:exon
so has part: feature:388808-388948:1:exon
so has part: feature:389020-389109:1:exon
so has part: feature:390200-390382:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:387389-387515:1:exon

position:387515:1
position: 387515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:387593-387706:1:exon

position:387593:1
position: 387593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:387706:1
position: 387706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:387782-387903:1:exon

position:387782:1
position: 387782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:387903:1
position: 387903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:388808-388948:1:exon

position:388808:1
position: 388808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:388948:1
position: 388948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:389020-389109:1:exon

position:389020:1
position: 389020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:389109:1
position: 389109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:390200-390382:1:exon

position:390200:1
position: 390200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437657
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437657
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: exosome complex component RRP46
translation: MAADSGSCLRPFSCELGPLSRPDGSAAFLQGDTSVLAALYGPAEAKGNRELPERAALEVLLRPKTGLPGVGERSREQLLRRTCEAVVLGRLHPRCAVSVVLQVVADGGSLLSCCLNAACMGLLDAGLPLASLFCGVTCALHPDGSLILDPTTRQEQEARAVLTFAIDSAEKKVLMASTKGACSMEEMQQCIAAAQSAADTIFQFYRDSIRRRYSKS
SIO_010081: LOC117437657
subclass of: SO_0000673
so part of: LOC117437657
location: join(387425..387515,387593..387706,387782..387903,388808..388948,389020..389109,390200..390292)
location: region:387425-390292:1
so has part: feature:387425-387515:1:exon
so has part: feature:387593-387706:1:exon
so has part: feature:387782-387903:1:exon
so has part: feature:388808-388948:1:exon
so has part: feature:389020-389109:1:exon
so has part: feature:390200-390292:1:exon

XP_033928091.1
type: Protein
SIO_000068: ncbiprotein

position:387425:1
position: 387425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:390292:1
position: 390292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:387425-387515:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:387593-387706:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:387782-387903:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:388808-388948:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:389020-389109:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:390200-390292:1:exon

LOC117437647
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437647
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 391391..392612
location: region:391391-392612:1
so has part: feature:391391-392612:1:exon
subclass of: SO_0000010

117437647
type: Gene
SIO_000068: ncbigene

position:391391:1
position: 391391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:392612:1
position: 392612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:391391-392612:1:exon

LOC117437647
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437647
product: B9 domain containing 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072186.1
SIO_010081: LOC117437647
subclass of: SO_0000673
so part of: LOC117437647
location: join(391391..391482,392067..392192,392275..392612)
location: region:391391-392612:1
so has part: feature:391391-391482:1:exon
so has part: feature:392067-392192:1:exon
so has part: feature:392275-392612:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:391391-391482:1:exon

position:391482:1
position: 391482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:392067-392192:1:exon

position:392067:1
position: 392067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:392192:1
position: 392192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:392275-392612:1:exon

position:392275:1
position: 392275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437647
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437647
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: B9 domain-containing protein 2
translation: MAELHLLGQIVGGSGFPQRRLFCKWGLQAGAAWRPLSGLTSGQTHVDDPQADDVTYWSHPIDVHYATRGLQGWPRLHVQVWHQDGLGRCDVVGYGCCHVPAAPGLHWLRCVTWRPLAGWRERARRSLVGGGARLAQAQEVVARGGGGGERFRLRSEAAGSVHLQLGVVLRHFRRYGVRCA
SIO_010081: LOC117437647
subclass of: SO_0000673
so part of: LOC117437647
location: join(391395..391482,392067..392192,392275..392604)
location: region:391395-392604:1
so has part: feature:391395-391482:1:exon
so has part: feature:392067-392192:1:exon
so has part: feature:392275-392604:1:exon

XP_033928077.1
type: Protein
SIO_000068: ncbiprotein

position:391395:1
position: 391395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:392604:1
position: 392604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:391395-391482:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:392067-392192:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:392275-392604:1:exon

LOC117437622
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437622
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 394619..403157
location: region:394619-403157:1
so has part: feature:394619-403157:1:exon
subclass of: SO_0000010

117437622
type: Gene
SIO_000068: ncbigene

position:394619:1
position: 394619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:403157:1
position: 403157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394619-403157:1:exon

LOC117437622
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437622
product: transforming growth factor beta 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_034072154.1
SIO_010081: LOC117437622
subclass of: SO_0000673
so part of: LOC117437622
location: join(394619..394991,397169..397323,398264..398381,399454..399537,400415..400571,401381..401534,402907..403157)
location: region:394619-403157:1
so has part: feature:394619-394991:1:exon
so has part: feature:397169-397323:1:exon
so has part: feature:398264-398381:1:exon
so has part: feature:399454-399537:1:exon
so has part: feature:400415-400571:1:exon
so has part: feature:401381-401534:1:exon
so has part: feature:402907-403157:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:394619-394991:1:exon

position:394991:1
position: 394991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:397169-397323:1:exon

position:397169:1
position: 397169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:397323:1
position: 397323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:398264-398381:1:exon

position:398264:1
position: 398264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:398381:1
position: 398381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:399454-399537:1:exon

position:399454:1
position: 399454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:399537:1
position: 399537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:400415-400571:1:exon

position:400415:1
position: 400415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:400571:1
position: 400571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:401381-401534:1:exon

position:401381:1
position: 401381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:401534:1
position: 401534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:402907-403157:1:exon

position:402907:1
position: 402907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437622
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437622
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transforming growth factor beta-1 proprotein
translation: MELPLPLPLLLALALAAARALSTCRTLDLEAARRKRIEAVRGQILSKLRLQSPPPPPPSPSPPSSAPPPPPELPDDVRALYNSTWELLEQERARAAPPAGPEEYYAKELHRFPMEPPGDAPPPGHALLLRFNASRVRAELGRGALLHRAELRMLRQRAPEGGDQQRLELYQGYGNSSWRYLQGRWVQAGPEDEWLWFDVTEAVQQWLRGNDPIGTFKLSVHCPCDEPGPPPPLRITFEGFEQPRGDLEGLARRQRRPPHVTAMVLPEERGSDMRSTRRRRGTGSDAAFCFGPEEQSCCLRPLYIDFRRDLQWRWIHEPRGYMANFCGGGCPFLWSSDSQHAKVLALYNQHHPGASGAPCCVPQTLAPLPIVYYVGRKARVEQLSDMVVQACKCS
SIO_010081: LOC117437622
subclass of: SO_0000673
so part of: LOC117437622
location: join(394634..394991,397169..397323,398264..398381,399454..399537,400415..400571,401381..401534,402907..403065)
location: region:394634-403065:1
so has part: feature:394634-394991:1:exon
so has part: feature:397169-397323:1:exon
so has part: feature:398264-398381:1:exon
so has part: feature:399454-399537:1:exon
so has part: feature:400415-400571:1:exon
so has part: feature:401381-401534:1:exon
so has part: feature:402907-403065:1:exon

XP_033928045.1
type: Protein
SIO_000068: ncbiprotein

position:394634:1
position: 394634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:403065:1
position: 403065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394634-394991:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:397169-397323:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:398264-398381:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:399454-399537:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:400415-400571:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:401381-401534:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:402907-403065:1:exon

LOC117437645
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437645
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(405259..410045)
location: region:405259-410045:-1
so has part: feature:405259-410045:-1:exon
subclass of: SO_0000010

117437645
type: Gene
SIO_000068: ncbigene

position:405259:-1
position: 405259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:410045:-1
position: 410045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:405259-410045:-1:exon

LOC117437645
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437645
product: coiled-coil domain containing 97, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072182.1
SIO_010081: LOC117437645
subclass of: SO_0000673
so part of: LOC117437645
location: complement(join(405259..405435,406412..406587,407626..407839,409730..409880,409956..410045))
location: region:405259-410045:-1
so has part: feature:409956-410045:-1:exon
so has part: feature:409730-409880:-1:exon
so has part: feature:407626-407839:-1:exon
so has part: feature:406412-406587:-1:exon
so has part: feature:405259-405435:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:409956-410045:-1:exon

position:409956:-1
position: 409956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:409730-409880:-1:exon

position:409730:-1
position: 409730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:409880:-1
position: 409880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:407626-407839:-1:exon

position:407626:-1
position: 407626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:407839:-1
position: 407839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:406412-406587:-1:exon

position:406412:-1
position: 406412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:406587:-1
position: 406587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:405259-405435:-1:exon

position:405435:-1
position: 405435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437645
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 97 isoform X1
translation: MRAVPHSNGSGLPGGVLEGMAEGDPKADPIEPGGTPMGDGRGLPRPRRPQARTVVRNRRFAALQELRRGGQYFSEQEMRAREPLLYQHYIGQYQEGGGDGPPPGPPLWGRPPLPLGPTAALHGGGGPTAAAEPTAPAGWGGSLWIRIPPLCPHLPQMRTGTPPPPTSRTHPNGNCSELSSCPAWSRASWRGRTGSSTTARWTGMLTWISGSLLSGMLRSVTSMQRSPALPPPCNKGGTPPKSPPLLWDWGEKGGLG
SIO_010081: LOC117437645
subclass of: SO_0000673
so part of: LOC117437645
location: complement(join(405260..405435,406412..406587,407626..407839,409730..409880,409956..410009))
location: region:405260-410009:-1
so has part: feature:409956-410009:-1:exon
so has part: feature:409730-409880:-1:exon
so has part: feature:407626-407839:-1:exon
so has part: feature:406412-406587:-1:exon
so has part: feature:405260-405435:-1:exon

XP_033928073.1
type: Protein
SIO_000068: ncbiprotein

position:405260:-1
position: 405260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:410009:-1
position: 410009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:409956-410009:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:409730-409880:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:407626-407839:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:406412-406587:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:405260-405435:-1:exon

LOC117437645
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 13146
gene: LOC117437645
product: coiled-coil domain containing 97, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_004550483.1
SIO_010081: LOC117437645
so part of: LOC117437645
location: complement(join(405303..405435,406412..406538,407626..407839,409730..409880,409956..410045))
location: region:405303-410045:-1
so has part: feature:409956-410045:-1:exon
so has part: feature:409730-409880:-1:exon
so has part: feature:407626-407839:-1:exon
so has part: feature:406412-406538:-1:exon
so has part: feature:405303-405435:-1:exon

position:405303:-1
position: 405303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:409956-410045:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:409730-409880:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:407626-407839:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:406412-406538:-1:exon

position:406538:-1
position: 406538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:405303-405435:-1:exon

LOC117437645
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437645
product: coiled-coil domain containing 97, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072183.1
SIO_010081: LOC117437645
subclass of: SO_0000673
so part of: LOC117437645
location: complement(join(405303..405435,406412..406538,407626..407754))
location: region:405303-407754:-1
so has part: feature:407626-407754:-1:exon
so has part: feature:406412-406538:-1:exon
so has part: feature:405303-405435:-1:exon

position:407754:-1
position: 407754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:407626-407754:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:406412-406538:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:405303-405435:-1:exon

LOC117437645
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437645
product: coiled-coil domain containing 97, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072184.1
SIO_010081: LOC117437645
subclass of: SO_0000673
so part of: LOC117437645
location: complement(join(405303..405435,406412..406587,407626..407753))
location: region:405303-407753:-1
so has part: feature:407626-407753:-1:exon
so has part: feature:406412-406587:-1:exon
so has part: feature:405303-405435:-1:exon

position:407753:-1
position: 407753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:407626-407753:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:406412-406587:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:405303-405435:-1:exon

LOC117437645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437645
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 97 isoform X2
translation: MEEEALQQRLSLQRLRDGDEDGDPSPPHIPDASERELLRAEFLSRMEQSFLEGQDREFDYSQVDGNADLDLGIIAERDAEERYFDAEEPSAAPPLQ
SIO_010081: LOC117437645
subclass of: SO_0000673
so part of: LOC117437645
location: complement(join(405327..405435,406412..406538,407626..407680))
location: region:405327-407680:-1
so has part: feature:407626-407680:-1:exon
so has part: feature:406412-406538:-1:exon
so has part: feature:405327-405435:-1:exon

XP_033928074.1
type: Protein
SIO_000068: ncbiprotein

position:405327:-1
position: 405327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:407680:-1
position: 407680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:407626-407680:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:406412-406538:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:405327-405435:-1:exon

LOC117437645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437645
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 97 isoform X3
translation: MGGLPMDTDPTSMSPSSPDEDGDPSPPHIPDASERELLRAEFLSRMEQSFLEGQDREFDYSQVDGNADLDLGIIAERDAEERYFDAEEPSAAPPLQ
SIO_010081: LOC117437645
subclass of: SO_0000673
so part of: LOC117437645
location: complement(join(405327..405435,406412..406587,407626..407631))
location: region:405327-407631:-1
so has part: feature:407626-407631:-1:exon
so has part: feature:406412-406587:-1:exon
so has part: feature:405327-405435:-1:exon

XP_033928075.1
type: Protein
SIO_000068: ncbiprotein

position:407631:-1
position: 407631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:407626-407631:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:406412-406587:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:405327-405435:-1:exon

LOC117437602
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437602
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(411352..426391)
location: region:411352-426391:-1
so has part: feature:411352-426391:-1:exon
subclass of: SO_0000010

117437602
type: Gene
SIO_000068: ncbigene

position:411352:-1
position: 411352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:426391:-1
position: 426391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:411352-426391:-1:exon

LOC117437602
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437602
product: tyrosine-protein kinase receptor UFO-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072113.1
SIO_010081: LOC117437602
subclass of: SO_0000673
so part of: LOC117437602
location: complement(join(411352..411363,412351..412522,413740..413876,415786..415945,416762..416871,417617..417738,418427..418519,419044..419121,421056..421151,421724..421808,421927..422050,422618..422647,423381..423507,423619..423758,424354..424511,426277..426391))
location: region:411352-426391:-1
so has part: feature:426277-426391:-1:exon
so has part: feature:424354-424511:-1:exon
so has part: feature:423619-423758:-1:exon
so has part: feature:423381-423507:-1:exon
so has part: feature:422618-422647:-1:exon
so has part: feature:421927-422050:-1:exon
so has part: feature:421724-421808:-1:exon
so has part: feature:421056-421151:-1:exon
so has part: feature:419044-419121:-1:exon
so has part: feature:418427-418519:-1:exon
so has part: feature:417617-417738:-1:exon
so has part: feature:416762-416871:-1:exon
so has part: feature:415786-415945:-1:exon
so has part: feature:413740-413876:-1:exon
so has part: feature:412351-412522:-1:exon
so has part: feature:411352-411363:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:426277-426391:-1:exon

position:426277:-1
position: 426277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:424354-424511:-1:exon

position:424354:-1
position: 424354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:424511:-1
position: 424511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:423619-423758:-1:exon

position:423619:-1
position: 423619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:423758:-1
position: 423758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:423381-423507:-1:exon

position:423381:-1
position: 423381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:423507:-1
position: 423507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:422618-422647:-1:exon

position:422618:-1
position: 422618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:422647:-1
position: 422647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:421927-422050:-1:exon

position:421927:-1
position: 421927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:422050:-1
position: 422050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:421724-421808:-1:exon

position:421724:-1
position: 421724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:421808:-1
position: 421808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:421056-421151:-1:exon

position:421056:-1
position: 421056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:421151:-1
position: 421151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:419044-419121:-1:exon

position:419044:-1
position: 419044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:419121:-1
position: 419121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:418427-418519:-1:exon

position:418427:-1
position: 418427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:418519:-1
position: 418519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:417617-417738:-1:exon

position:417617:-1
position: 417617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:417738:-1
position: 417738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:416762-416871:-1:exon

position:416762:-1
position: 416762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:416871:-1
position: 416871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:415786-415945:-1:exon

position:415786:-1
position: 415786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:415945:-1
position: 415945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:413740-413876:-1:exon

position:413740:-1
position: 413740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:413876:-1
position: 413876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:412351-412522:-1:exon

position:412351:-1
position: 412351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:412522:-1
position: 412522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:411352-411363:-1:exon

position:411363:-1
position: 411363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437602
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437602
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein kinase receptor UFO-like
translation: MEEEEAPLWCGLCPPWGACGLQFRVRSSYSRRSTNALLSRLGISEELQEKLRDVTLDRHRLALGKTLGEGEFGSVVEGQLQQESGVLRVAVKSMKVPMCSRAQLEQFLSEAACMKEFEHPNVMGLIGVCLQPWGEGSLPAPIVVLPFMAHGDLHSFLLQARLGQPPRALSPGMLLCFLRDIAAGMEYLSLRNFIHRDLAARNCMLDARLRVLVADFGLAKRLGEGQYYRQGRVAPVPVKWVALESLESRVYSTKSDVWSFGVTMWEVLARGRTPYPGLENGDVYEYLRGGQRLRAPPDCPPELYSLMLRCWAADPRARPSFTELGGALRALPPPAPLYVNMGEGGAAGGGGEGGGKEVEGVQG
SIO_010081: LOC117437602
subclass of: SO_0000673
so part of: LOC117437602
location: complement(join(411352..411363,412351..412522,413740..413876,415786..415945,416762..416871,417617..417738,418427..418519,419044..419121,421056..421151,421724..421808,421927..421953))
location: region:411352-421953:-1
so has part: feature:421927-421953:-1:exon
so has part: feature:421724-421808:-1:exon
so has part: feature:421056-421151:-1:exon
so has part: feature:419044-419121:-1:exon
so has part: feature:418427-418519:-1:exon
so has part: feature:417617-417738:-1:exon
so has part: feature:416762-416871:-1:exon
so has part: feature:415786-415945:-1:exon
so has part: feature:413740-413876:-1:exon
so has part: feature:412351-412522:-1:exon
so has part: feature:411352-411363:-1:exon

XP_033928004.1
type: Protein
SIO_000068: ncbiprotein

position:421953:-1
position: 421953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:421927-421953:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421724-421808:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:421056-421151:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:419044-419121:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:418427-418519:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:417617-417738:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:416762-416871:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:415786-415945:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:413740-413876:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:412351-412522:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:411352-411363:-1:exon

LOC117437658
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437658
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(428229..440598)
location: region:428229-440598:-1
so has part: feature:428229-440598:-1:exon
subclass of: SO_0000010

117437658
type: Gene
SIO_000068: ncbigene

position:428229:-1
position: 428229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:440598:-1
position: 440598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:428229-440598:-1:exon

LOC117437658
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437658
product: tyrosine-protein kinase receptor UFO-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_034072204.1
SIO_010081: LOC117437658
subclass of: SO_0000673
so part of: LOC117437658
location: complement(join(428229..428501,429564..429664,430283..430343))
location: region:428229-430343:-1
so has part: feature:430283-430343:-1:exon
so has part: feature:429564-429664:-1:exon
so has part: feature:428229-428501:-1:exon

position:430343:-1
position: 430343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:430283-430343:-1:exon

position:430283:-1
position: 430283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:429564-429664:-1:exon

position:429564:-1
position: 429564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:429664:-1
position: 429664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:428229-428501:-1:exon

position:428501:-1
position: 428501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437658
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437658
product: tyrosine-protein kinase receptor UFO-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_034072203.1
SIO_010081: LOC117437658
subclass of: SO_0000673
so part of: LOC117437658
location: complement(join(428230..428501,429564..429664,431284..431340))
location: region:428230-431340:-1
so has part: feature:431284-431340:-1:exon
so has part: feature:429564-429664:-1:exon
so has part: feature:428230-428501:-1:exon

position:428230:-1
position: 428230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:431340:-1
position: 431340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:431284-431340:-1:exon

position:431284:-1
position: 431284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:429564-429664:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:428230-428501:-1:exon

LOC117437658
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437658
product: tyrosine-protein kinase receptor UFO-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_034072202.1
SIO_010081: LOC117437658
subclass of: SO_0000673
so part of: LOC117437658
location: complement(join(428230..428501,429564..429664,430064..430113))
location: region:428230-430113:-1
so has part: feature:430064-430113:-1:exon
so has part: feature:429564-429664:-1:exon
so has part: feature:428230-428501:-1:exon

position:430113:-1
position: 430113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:430064-430113:-1:exon

position:430064:-1
position: 430064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:429564-429664:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:428230-428501:-1:exon

LOC117437658
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437658
product: tyrosine-protein kinase receptor UFO-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_034072201.1
SIO_010081: LOC117437658
subclass of: SO_0000673
so part of: LOC117437658
location: complement(join(428231..428501,429564..429664,432581..432780,440479..440598))
location: region:428231-440598:-1
so has part: feature:440479-440598:-1:exon
so has part: feature:432581-432780:-1:exon
so has part: feature:429564-429664:-1:exon
so has part: feature:428231-428501:-1:exon

position:428231:-1
position: 428231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:440479-440598:-1:exon

position:440479:-1
position: 440479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:432581-432780:-1:exon

position:432581:-1
position: 432581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:432780:-1
position: 432780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:429564-429664:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:428231-428501:-1:exon

LOC117437658
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437658
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein kinase receptor UFO-like isoform X1
translation: MGVTQLRLTPVLSSHSGRYRCWARAGGQQLLSPEAHLELAGLPQFHEEPQDAQVPLGGALTLRCGARGPPEPVSIRWLRDGRPLEGPAANGSGTLRMRGAGGRGTQGPIGNNRDL
SIO_010081: LOC117437658
subclass of: SO_0000673
so part of: LOC117437658
location: complement(join(428275..428501,429564..429664,432581..432600))
location: region:428275-432600:-1
so has part: feature:432581-432600:-1:exon
so has part: feature:429564-429664:-1:exon
so has part: feature:428275-428501:-1:exon

XP_033928092.1
type: Protein
SIO_000068: ncbiprotein

position:428275:-1
position: 428275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:432600:-1
position: 432600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:432581-432600:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:429564-429664:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:428275-428501:-1:exon

LOC117437658
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437658
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein kinase receptor UFO-like isoform X3
translation: MGVTQLRLTPVLSSHSGRYRCWARAGGQQLLSPEAHLELAGLPQFHEEPQDAQVPLGGALTLRCGARGPPEPVSIRWLRDGRPLEGPAANGSGTLRMRGAGGRGTQGPIGNNRDL
SIO_010081: LOC117437658
subclass of: SO_0000673
so part of: LOC117437658
location: complement(join(428275..428501,429564..429664,431284..431303))
location: region:428275-431303:-1
so has part: feature:431284-431303:-1:exon
so has part: feature:429564-429664:-1:exon
so has part: feature:428275-428501:-1:exon

XP_033928094.1
type: Protein
SIO_000068: ncbiprotein

position:431303:-1
position: 431303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:431284-431303:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:429564-429664:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:428275-428501:-1:exon

LOC117437658
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437658
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein kinase receptor UFO-like isoform X4
translation: MGVTQLRLTPVLSSHSGRYRCWARAGGQQLLSPEAHLELAGLPQFHEEPQDAQVPLGGALTLRCGARGPPEPVSIRWLRDGRPLEGPAANGSGTLRMRGAGGRGTQGPIGNNRDL
SIO_010081: LOC117437658
subclass of: SO_0000673
so part of: LOC117437658
location: complement(join(428275..428501,429564..429664,430283..430302))
location: region:428275-430302:-1
so has part: feature:430283-430302:-1:exon
so has part: feature:429564-429664:-1:exon
so has part: feature:428275-428501:-1:exon

XP_033928095.1
type: Protein
SIO_000068: ncbiprotein

position:430302:-1
position: 430302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:430283-430302:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:429564-429664:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:428275-428501:-1:exon

LOC117437658
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437658
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein kinase receptor UFO-like isoform X2
translation: MGVTQLRLTPVLSSHSGRYRCWARAGGQQLLSPEAHLELAGLPQFHEEPQDAQVPLGGALTLRCGARGPPEPVSIRWLRDGRPLEGPAANGSGTLRMRGAGGRGTQGPIGNNRDL
SIO_010081: LOC117437658
subclass of: SO_0000673
so part of: LOC117437658
location: complement(join(428275..428501,429564..429664,430064..430083))
location: region:428275-430083:-1
so has part: feature:430064-430083:-1:exon
so has part: feature:429564-429664:-1:exon
so has part: feature:428275-428501:-1:exon

XP_033928093.1
type: Protein
SIO_000068: ncbiprotein

position:430083:-1
position: 430083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:430064-430083:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:429564-429664:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:428275-428501:-1:exon

LOC117437603
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437603
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(442494..449618)
location: region:442494-449618:-1
so has part: feature:442494-449618:-1:exon
subclass of: SO_0000010

117437603
type: Gene
SIO_000068: ncbigene

position:442494:-1
position: 442494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:449618:-1
position: 449618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442494-449618:-1:exon

LOC117437603
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437603
product: RAB4B, member RAS oncogene family
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072114.1
SIO_010081: LOC117437603
subclass of: SO_0000673
so part of: LOC117437603
location: complement(join(442494..442498,442651..442795,443492..443613,444714..444810,445839..445993,446089..446151,446986..447100,448205..448285,449516..449618))
location: region:442494-449618:-1
so has part: feature:449516-449618:-1:exon
so has part: feature:448205-448285:-1:exon
so has part: feature:446986-447100:-1:exon
so has part: feature:446089-446151:-1:exon
so has part: feature:445839-445993:-1:exon
so has part: feature:444714-444810:-1:exon
so has part: feature:443492-443613:-1:exon
so has part: feature:442651-442795:-1:exon
so has part: feature:442494-442498:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:449516-449618:-1:exon

position:449516:-1
position: 449516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:448205-448285:-1:exon

position:448205:-1
position: 448205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:448285:-1
position: 448285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:446986-447100:-1:exon

position:446986:-1
position: 446986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:447100:-1
position: 447100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:446089-446151:-1:exon

position:446089:-1
position: 446089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:446151:-1
position: 446151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:445839-445993:-1:exon

position:445839:-1
position: 445839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:445993:-1
position: 445993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:444714-444810:-1:exon

position:444714:-1
position: 444714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:444810:-1
position: 444810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:443492-443613:-1:exon

position:443492:-1
position: 443492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:443613:-1
position: 443613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:442651-442795:-1:exon

position:442651:-1
position: 442651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:442795:-1
position: 442795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:442494-442498:-1:exon

position:442498:-1
position: 442498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437603
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437603
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: ras-related protein Rab-4B
translation: MSETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSKVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDAEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAREILNKIESGELDPERMGSGIQFGDASLRQLRQPRGGAAPHRPELRLLSAVFPPCRPPPSRITPGFPLGSPPPLSLLHPDAAPPNNPMGGVGLYHYGGA
SIO_010081: LOC117437603
subclass of: SO_0000673
so part of: LOC117437603
location: complement(join(442494..442498,442651..442795,443492..443613,444714..444810,445839..445993,446089..446151,446986..447100,448205..448285,449516..449531))
location: region:442494-449531:-1
so has part: feature:449516-449531:-1:exon
so has part: feature:448205-448285:-1:exon
so has part: feature:446986-447100:-1:exon
so has part: feature:446089-446151:-1:exon
so has part: feature:445839-445993:-1:exon
so has part: feature:444714-444810:-1:exon
so has part: feature:443492-443613:-1:exon
so has part: feature:442651-442795:-1:exon
so has part: feature:442494-442498:-1:exon

XP_033928005.1
type: Protein
SIO_000068: ncbiprotein

position:449531:-1
position: 449531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:449516-449531:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:448205-448285:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:446986-447100:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:446089-446151:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:445839-445993:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:444714-444810:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:443492-443613:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:442651-442795:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:442494-442498:-1:exon

LOC117437612
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437612
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(450125..455887)
location: region:450125-455887:-1
so has part: feature:450125-455887:-1:exon
subclass of: SO_0000010

117437612
type: Gene
SIO_000068: ncbigene

position:450125:-1
position: 450125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:455887:-1
position: 455887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:450125-455887:-1:exon

LOC117437612
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437612
product: small nuclear ribonucleoprotein polypeptide A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072140.1
SIO_010081: LOC117437612
subclass of: SO_0000673
so part of: LOC117437612
location: complement(join(450125..451003,451086..451174,452018..452158,453059..453223,454368..454540,455562..455653,455844..455886))
location: region:450125-455886:-1
so has part: feature:455844-455886:-1:exon
so has part: feature:455562-455653:-1:exon
so has part: feature:454368-454540:-1:exon
so has part: feature:453059-453223:-1:exon
so has part: feature:452018-452158:-1:exon
so has part: feature:451086-451174:-1:exon
so has part: feature:450125-451003:-1:exon

position:455886:-1
position: 455886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455844-455886:-1:exon

position:455844:-1
position: 455844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:455562-455653:-1:exon

position:455562:-1
position: 455562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:455653:-1
position: 455653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:454368-454540:-1:exon

position:454368:-1
position: 454368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:454540:-1
position: 454540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:453059-453223:-1:exon

position:453059:-1
position: 453059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:453223:-1
position: 453223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:452018-452158:-1:exon

position:452018:-1
position: 452018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:452158:-1
position: 452158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:451086-451174:-1:exon

position:451086:-1
position: 451086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:451174:-1
position: 451174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:450125-451003:-1:exon

position:451003:-1
position: 451003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437612
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437612
product: small nuclear ribonucleoprotein polypeptide A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072141.1
SIO_010081: LOC117437612
subclass of: SO_0000673
so part of: LOC117437612
location: complement(join(450844..451003,451086..451174,452018..452158,453059..453223,454368..454540,455562..455650,455844..455887))
location: region:450844-455887:-1
so has part: feature:455844-455887:-1:exon
so has part: feature:455562-455650:-1:exon
so has part: feature:454368-454540:-1:exon
so has part: feature:453059-453223:-1:exon
so has part: feature:452018-452158:-1:exon
so has part: feature:451086-451174:-1:exon
so has part: feature:450844-451003:-1:exon

position:450844:-1
position: 450844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455844-455887:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:455562-455650:-1:exon

position:455650:-1
position: 455650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:454368-454540:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:453059-453223:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:452018-452158:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451086-451174:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:450844-451003:-1:exon

LOC117437612
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437612
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: U1 small nuclear ribonucleoprotein A
translation: MAVQDPRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARSLRLRGQAFVIFKELSSASSALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKGQEAPSGKKSGAGAAAPVQGSVPGMPPMSQAPRMMHHMAGQPPYMPPPGMIPPPGMTPGGIPPGAMPPQQLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQSNAMKISFAKK
SIO_010081: LOC117437612
subclass of: SO_0000673
so part of: LOC117437612
location: complement(join(450844..451003,451086..451174,452018..452158,453059..453223,454368..454540,455562..455634))
location: region:450844-455634:-1
so has part: feature:455562-455634:-1:exon
so has part: feature:454368-454540:-1:exon
so has part: feature:453059-453223:-1:exon
so has part: feature:452018-452158:-1:exon
so has part: feature:451086-451174:-1:exon
so has part: feature:450844-451003:-1:exon

XP_033928031.1
type: Protein
SIO_000068: ncbiprotein

position:455634:-1
position: 455634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455562-455634:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:454368-454540:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:453059-453223:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:452018-452158:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:451086-451174:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:450844-451003:-1:exon

LOC117437612
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437612
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: U1 small nuclear ribonucleoprotein A
translation: MAVQDPRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARSLRLRGQAFVIFKELSSASSALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKGQEAPSGKKSGAGAAAPVQGSVPGMPPMSQAPRMMHHMAGQPPYMPPPGMIPPPGMTPGGIPPGAMPPQQLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQSNAMKISFAKK
SIO_010081: LOC117437612
subclass of: SO_0000673
so part of: LOC117437612
location: complement(join(450844..451003,451086..451174,452018..452158,453059..453223,454368..454540,455562..455634))
location: region:450844-455634:-1
so has part: feature:455562-455634:-1:exon
so has part: feature:454368-454540:-1:exon
so has part: feature:453059-453223:-1:exon
so has part: feature:452018-452158:-1:exon
so has part: feature:451086-451174:-1:exon
so has part: feature:450844-451003:-1:exon

XP_033928032.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:455562-455634:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:454368-454540:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:453059-453223:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:452018-452158:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:451086-451174:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:450844-451003:-1:exon

LOC117437646
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437646
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 456112..459926
location: region:456112-459926:1
so has part: feature:456112-459926:1:exon
subclass of: SO_0000010

117437646
type: Gene
SIO_000068: ncbigene

position:456112:1
position: 456112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:459926:1
position: 459926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:456112-459926:1:exon

LOC117437646
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437646
product: chromosome 24 C19orf54 homolog
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072185.1
SIO_010081: LOC117437646
subclass of: SO_0000673
so part of: LOC117437646
location: join(456112..456234,456973..457041,457640..457780,458596..458725,459540..459610,459713..459926)
location: region:456112-459926:1
so has part: feature:456112-456234:1:exon
so has part: feature:456973-457041:1:exon
so has part: feature:457640-457780:1:exon
so has part: feature:458596-458725:1:exon
so has part: feature:459540-459610:1:exon
so has part: feature:459713-459926:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:456112-456234:1:exon

position:456234:1
position: 456234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:456973-457041:1:exon

position:456973:1
position: 456973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457041:1
position: 457041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:457640-457780:1:exon

position:457640:1
position: 457640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457780:1
position: 457780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:458596-458725:1:exon

position:458596:1
position: 458596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:458725:1
position: 458725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:459540-459610:1:exon

position:459540:1
position: 459540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:459610:1
position: 459610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:459713-459926:1:exon

position:459713:1
position: 459713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437646
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437646
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: UPF0692 protein C19orf54 homolog
translation: MLRDALERAGAALGGDGGVRELLRRRRESLSPHLQWLLIHRPAPPLIQDGPQCGLVALWMAAALLTPPHRPAPPPVGLEEVLGVARARGFTIHGEMFSATDMAALAQELFHCQAEVTEGGLEGPNRSRLLQHLLGGLPLLVPYDEDNNHEPCCRRGHRAHWAVITGVLLGTPSPAPRPLGRPDPDIPNLFHARDEDRDQGGGFQWGGGPH
SIO_010081: LOC117437646
subclass of: SO_0000673
so part of: LOC117437646
location: join(456149..456234,456973..457041,457640..457780,458596..458725,459540..459610,459713..459849)
location: region:456149-459849:1
so has part: feature:456149-456234:1:exon
so has part: feature:456973-457041:1:exon
so has part: feature:457640-457780:1:exon
so has part: feature:458596-458725:1:exon
so has part: feature:459540-459610:1:exon
so has part: feature:459713-459849:1:exon

XP_033928076.1
type: Protein
SIO_000068: ncbiprotein

position:456149:1
position: 456149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:459849:1
position: 459849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:456149-456234:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:456973-457041:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:457640-457780:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:458596-458725:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:459540-459610:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:459713-459849:1:exon

LOC101879728
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC101879728
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 460570..467288
location: region:460570-467288:1
so has part: feature:460570-467288:1:exon
subclass of: SO_0000010

101879728
type: Gene
SIO_000068: ncbigene

position:460570:1
position: 460570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:467288:1
position: 467288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:460570-467288:1:exon

LOC101879728
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC101879728
product: coenzyme Q8B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072197.1
SIO_010081: LOC101879728
subclass of: SO_0000673
so part of: LOC101879728
location: join(460570..461220,461331..461397,461923..461982,462412..462528,463315..463400,463478..463618,463687..463768,463857..463950,464035..464176,464920..465027,465111..465176,465262..465348,466986..467288)
location: region:460570-467288:1
so has part: feature:460570-461220:1:exon
so has part: feature:461331-461397:1:exon
so has part: feature:461923-461982:1:exon
so has part: feature:462412-462528:1:exon
so has part: feature:463315-463400:1:exon
so has part: feature:463478-463618:1:exon
so has part: feature:463687-463768:1:exon
so has part: feature:463857-463950:1:exon
so has part: feature:464035-464176:1:exon
so has part: feature:464920-465027:1:exon
so has part: feature:465111-465176:1:exon
so has part: feature:465262-465348:1:exon
so has part: feature:466986-467288:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:460570-461220:1:exon

position:461220:1
position: 461220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:461331-461397:1:exon

position:461331:1
position: 461331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:461397:1
position: 461397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:461923-461982:1:exon

position:461923:1
position: 461923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:461982:1
position: 461982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:462412-462528:1:exon

position:462412:1
position: 462412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:462528:1
position: 462528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:463315-463400:1:exon

position:463315:1
position: 463315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:463400:1
position: 463400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:463478-463618:1:exon

position:463478:1
position: 463478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:463618:1
position: 463618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:463687-463768:1:exon

position:463687:1
position: 463687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:463768:1
position: 463768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:463857-463950:1:exon

position:463857:1
position: 463857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:463950:1
position: 463950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:464035-464176:1:exon

position:464035:1
position: 464035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:464176:1
position: 464176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:464920-465027:1:exon

position:464920:1
position: 464920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:465027:1
position: 465027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:465111-465176:1:exon

position:465111:1
position: 465111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:465176:1
position: 465176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:465262-465348:1:exon

position:465262:1
position: 465262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:465348:1
position: 465348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:466986-467288:1:exon

position:466986:1
position: 466986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101879728
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC101879728
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: atypical kinase COQ8B, mitochondrial
translation: MARPIALRRLHRTCGLRGLTAEEAERARGVRGPPRQKLSEGARERPVPVSRLGRMASFGGLALGLGIGALAQAARAKLGGAPLGASSLLAGANGQRLAGALCRTRGAALKLGQMLSMQDPGFLPPDLLQALERLRQGADFMPRWQSTQVLDEELGPGWRDKLLEFQDIPFAAASIGQVHLGMLQDGTRVAIKIQYPGIAQSIRSDVENLLALLRMSSALPKGLFAEKSLEVLQKELEWECDYQREAQCARTFRDLLRDDPFFSVPRVVEELSASRVLTMELGSGIPLDQCRDLAQDVRDEICTQLLRLCLQELFEFRLMQTDPNWANFLYDPPQHKVTLLDFGATRSFDREFTDHYIEVIWAAADGDKEKVLQKSRDLKFLTGFESKAHLSALSAAIFLLAEPFSSSAPFDFGCARTAGGVRALLPPLLRHRLAPPPEASYALHRKLAGAFLCCARLRGRVRCRALFLRMRGRYWEGRTPPQ
SIO_010081: LOC101879728
subclass of: SO_0000673
so part of: LOC101879728
location: join(461110..461220,461331..461397,461923..461982,462412..462528,463315..463400,463478..463618,463687..463768,463857..463950,464035..464176,464920..465027,465111..465176,465262..465348,466986..467273)
location: region:461110-467273:1
so has part: feature:461110-461220:1:exon
so has part: feature:461331-461397:1:exon
so has part: feature:461923-461982:1:exon
so has part: feature:462412-462528:1:exon
so has part: feature:463315-463400:1:exon
so has part: feature:463478-463618:1:exon
so has part: feature:463687-463768:1:exon
so has part: feature:463857-463950:1:exon
so has part: feature:464035-464176:1:exon
so has part: feature:464920-465027:1:exon
so has part: feature:465111-465176:1:exon
so has part: feature:465262-465348:1:exon
so has part: feature:466986-467273:1:exon

XP_033928088.1
type: Protein
SIO_000068: ncbiprotein

position:461110:1
position: 461110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:467273:1
position: 467273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461110-461220:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:461331-461397:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:461923-461982:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:462412-462528:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:463315-463400:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:463478-463618:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:463687-463768:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:463857-463950:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:464035-464176:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:464920-465027:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:465111-465176:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:465262-465348:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:466986-467273:1:exon

LOC117437655
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437655
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(463489..464273)
location: region:463489-464273:-1
so has part: feature:463489-464273:-1:exon
subclass of: SO_0000011

117437655
type: Gene
SIO_000068: ncbigene

position:463489:-1
position: 463489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:464273:-1
position: 464273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:463489-464273:-1:exon

LOC117437655
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13146
nc RNA class: lncRNA
gene: LOC117437655
product: uncharacterized LOC117437655
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004550484.1
SIO_010081: LOC117437655
subclass of: SO_0000673
so part of: LOC117437655
location: complement(join(463489..463897,464007..464273))
location: region:463489-464273:-1
so has part: feature:464007-464273:-1:exon
so has part: feature:463489-463897:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:464007-464273:-1:exon

position:464007:-1
position: 464007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:463489-463897:-1:exon

position:463897:-1
position: 463897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101877086
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC101877086
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 468573..476595
location: region:468573-476595:1
so has part: feature:468573-476595:1:exon
subclass of: SO_0000010

101877086
type: Gene
SIO_000068: ncbigene

position:468573:1
position: 468573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:476595:1
position: 476595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468573-476595:1:exon

LOC101877086
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC101877086
product: NSF attachment protein alpha
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072205.1
SIO_010081: LOC101877086
subclass of: SO_0000673
so part of: LOC101877086
location: join(468573..468715,470494..470573,470660..470776,472140..472186,472266..472343,473139..473194,474268..474352,474994..475098,475995..476063,476143..476193,476269..476595)
location: region:468573-476595:1
so has part: feature:468573-468715:1:exon
so has part: feature:470494-470573:1:exon
so has part: feature:470660-470776:1:exon
so has part: feature:472140-472186:1:exon
so has part: feature:472266-472343:1:exon
so has part: feature:473139-473194:1:exon
so has part: feature:474268-474352:1:exon
so has part: feature:474994-475098:1:exon
so has part: feature:475995-476063:1:exon
so has part: feature:476143-476193:1:exon
so has part: feature:476269-476595:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:468573-468715:1:exon

position:468715:1
position: 468715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:470494-470573:1:exon

position:470494:1
position: 470494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:470573:1
position: 470573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:470660-470776:1:exon

position:470660:1
position: 470660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:470776:1
position: 470776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:472140-472186:1:exon

position:472140:1
position: 472140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:472186:1
position: 472186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:472266-472343:1:exon

position:472266:1
position: 472266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:472343:1
position: 472343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:473139-473194:1:exon

position:473139:1
position: 473139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:473194:1
position: 473194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:474268-474352:1:exon

position:474268:1
position: 474268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:474352:1
position: 474352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:474994-475098:1:exon

position:474994:1
position: 474994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:475098:1
position: 475098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:475995-476063:1:exon

position:475995:1
position: 475995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:476063:1
position: 476063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:476143-476193:1:exon

position:476143:1
position: 476143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:476193:1
position: 476193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:476269-476595:1:exon

position:476269:1
position: 476269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101877086
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC101877086
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-soluble NSF attachment protein
translation: MAQAGKEQEALQLLAEADRKLRGSRSFLAGLFGGNSRIEEACDIYSRAANMFKMAKNWSAAGNAFCQAAQLHLQLQSKHDAATSFVDAGNAFKKADPQEAINCLLRAIEIYTDMGRFTIAAKHHISIAEIYETDLVDIEKAIAHYEQAADYYRGEESNSSANKCLLKVATYAAQLEQYPRALDIYEQVAAAAMDSPLLKYSAKEHFFRAALCHFCIDALNAKLAMQKYEEMFPAFSDSRECKLLKKLLEAHEEQNVDAYTDAVKEYDSISRLDQWLTTMLLRIKKTIQGEEEDLR
SIO_010081: LOC101877086
subclass of: SO_0000673
so part of: LOC101877086
location: join(468618..468715,470494..470573,470660..470776,472140..472186,472266..472343,473139..473194,474268..474352,474994..475098,475995..476063,476143..476193,476269..476370)
location: region:468618-476370:1
so has part: feature:468618-468715:1:exon
so has part: feature:470494-470573:1:exon
so has part: feature:470660-470776:1:exon
so has part: feature:472140-472186:1:exon
so has part: feature:472266-472343:1:exon
so has part: feature:473139-473194:1:exon
so has part: feature:474268-474352:1:exon
so has part: feature:474994-475098:1:exon
so has part: feature:475995-476063:1:exon
so has part: feature:476143-476193:1:exon
so has part: feature:476269-476370:1:exon

XP_033928096.1
type: Protein
SIO_000068: ncbiprotein

position:468618:1
position: 468618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:476370:1
position: 476370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468618-468715:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:470494-470573:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:470660-470776:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:472140-472186:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:472266-472343:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:473139-473194:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:474268-474352:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:474994-475098:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:475995-476063:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:476143-476193:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:476269-476370:1:exon

LOC115947593
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC115947593
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 477955..485701
location: region:477955-485701:1
so has part: feature:477955-485701:1:exon
subclass of: SO_0000010

115947593
type: Gene
SIO_000068: ncbigene

position:477955:1
position: 477955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:485701:1
position: 485701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:477955-485701:1:exon

LOC115947593
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC115947593
product: kaptin, actin binding protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_034072115.1
SIO_010081: LOC115947593
subclass of: SO_0000673
so part of: LOC115947593
location: join(477955..478328,479560..479642,479731..479815,479971..480025,480693..480768,481047..481120,481491..481603,481732..481824,481905..481974,482681..482816,484029..484184,485504..485701)
location: region:477955-485701:1
so has part: feature:477955-478328:1:exon
so has part: feature:479560-479642:1:exon
so has part: feature:479731-479815:1:exon
so has part: feature:479971-480025:1:exon
so has part: feature:480693-480768:1:exon
so has part: feature:481047-481120:1:exon
so has part: feature:481491-481603:1:exon
so has part: feature:481732-481824:1:exon
so has part: feature:481905-481974:1:exon
so has part: feature:482681-482816:1:exon
so has part: feature:484029-484184:1:exon
so has part: feature:485504-485701:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:477955-478328:1:exon

position:478328:1
position: 478328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:479560-479642:1:exon

position:479560:1
position: 479560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:479642:1
position: 479642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:479731-479815:1:exon

position:479731:1
position: 479731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:479815:1
position: 479815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:479971-480025:1:exon

position:479971:1
position: 479971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:480025:1
position: 480025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:480693-480768:1:exon

position:480693:1
position: 480693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:480768:1
position: 480768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:481047-481120:1:exon

position:481047:1
position: 481047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:481120:1
position: 481120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:481491-481603:1:exon

position:481491:1
position: 481491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:481603:1
position: 481603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:481732-481824:1:exon

position:481732:1
position: 481732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:481824:1
position: 481824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:481905-481974:1:exon

position:481905:1
position: 481905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:481974:1
position: 481974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:482681-482816:1:exon

position:482681:1
position: 482681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:482816:1
position: 482816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:484029-484184:1:exon

position:484029:1
position: 484029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:484184:1
position: 484184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:485504-485701:1:exon

position:485504:1
position: 485504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115947593
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC115947593
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: KICSTOR complex protein kaptin
translation: MAQPCPLAEDSFSRLSSQSNVYGLAALPAGEEGPGGLLAAALKGKVIHFRYHELQRRMRPLASELQFTYIPVDAEIVSIDSFPKSPPQRGLVVGITFIKDSGDKPSPFLNIYCDYEPGSEYDLDSVAQSCLKPGAAVHPFQLCHAEVRSGDSLETVFLLSGNDPAVHLYKENSSSHQFEEQPIQRLFPELQDLPSNVLWLHVLTLPGSASHRITAFGCQSGHVRVAHVDQSGPTVLQSWSIQQDGPISKVLVFPLELDPDTSGQGDAVAEPSFSVLVASTMELSVVYRDVLRRGLTDQCPLPGSDLHDSVLCALAPDLDFDGHPELLLGTYGQELLCYKYSQGEFRLLWSRRFPSPLLSLLYSDLTGDGLAELAVVCVRGLHVLQHRLEPGRFAVSWSGSGRSWGPPRTPPNKPGSGSSWGPPNPLGWAWDHGGGGARPGLVHRETLGGA
SIO_010081: LOC115947593
subclass of: SO_0000673
so part of: LOC115947593
location: join(478115..478328,479560..479642,479731..479815,479971..480025,480693..480768,481047..481120,481491..481603,481732..481824,481905..481974,482681..482816,484029..484184,485504..485701)
location: region:478115-485701:1
so has part: feature:478115-478328:1:exon
so has part: feature:479560-479642:1:exon
so has part: feature:479731-479815:1:exon
so has part: feature:479971-480025:1:exon
so has part: feature:480693-480768:1:exon
so has part: feature:481047-481120:1:exon
so has part: feature:481491-481603:1:exon
so has part: feature:481732-481824:1:exon
so has part: feature:481905-481974:1:exon
so has part: feature:482681-482816:1:exon
so has part: feature:484029-484184:1:exon
so has part: feature:485504-485701:1:exon

XP_033928006.1
type: Protein
SIO_000068: ncbiprotein

position:478115:1
position: 478115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:478115-478328:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:479560-479642:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:479731-479815:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:479971-480025:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:480693-480768:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:481047-481120:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:481491-481603:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:481732-481824:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:481905-481974:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:482681-482816:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:484029-484184:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:485504-485701:1:exon

LOC101879787
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC101879787
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 490602..499404
location: region:490602-499404:1
so has part: feature:490602-499404:1:exon
subclass of: SO_0000010

101879787
type: Gene
SIO_000068: ncbigene

position:490602:1
position: 490602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:499404:1
position: 499404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490602-499404:1:exon

LOC101879787
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC101879787
product: solute carrier family 8 member A2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072190.1
SIO_010081: LOC101879787
subclass of: SO_0000673
so part of: LOC101879787
location: join(490602..492311,494551..494654,495055..495072,495761..495885,496434..496538,497714..497984,499028..499404)
location: region:490602-499404:1
so has part: feature:490602-492311:1:exon
so has part: feature:494551-494654:1:exon
so has part: feature:495055-495072:1:exon
so has part: feature:495761-495885:1:exon
so has part: feature:496434-496538:1:exon
so has part: feature:497714-497984:1:exon
so has part: feature:499028-499404:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:490602-492311:1:exon

position:492311:1
position: 492311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:494551-494654:1:exon

position:494551:1
position: 494551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:494654:1
position: 494654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:495055-495072:1:exon

position:495055:1
position: 495055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:495072:1
position: 495072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:495761-495885:1:exon

position:495761:1
position: 495761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:495885:1
position: 495885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:496434-496538:1:exon

position:496434:1
position: 496434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:496538:1
position: 496538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:497714-497984:1:exon

position:497714:1
position: 497714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:497984:1
position: 497984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:499028-499404:1:exon

position:499028:1
position: 499028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101879787
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC101879787
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sodium/calcium exchanger 2
translation: MVYLFLGVSIIADRFMASIEVITSKEKEITITKANGETSVGTVRIWNETVSNLTLMALGSSAPEILLSVIEVCGHDFQAGELGPGTIVGSAAFNMFVVIAVCVYVVPAGECRRIKHLRVFFVTASWSIFAYVWLYLILAVISPGVVQVWEALLTLIFFPVCVVVAWAADKRLLFYKDVYKRYRADPRSGIIIGTEGDAPKPIEMDGSIPAPPPPPEQPDDKEQDEARREVIQILKELKQKYPEKELEQLLDMANYAALLHQQKSRAFYRIQATRMMTGAGNVLRKHAAAPSRRFPALPEAPSDAEDEECGRIYFEPCLYHCLENCGAVTLSVACEHGAGANRTFYVDYRTEDGSAKAGSDYEYSEGTLVFKPGETVKELRIGIIDDDIFEEDERFFVRLLNLRVGDAEGMFEPDCAEHPKGKLVAPALATVTILDDDHAGIFAFQERMMRVSEGQGWVEVKVVRGSGARGTVLLPYRTVEGSAKGGGVHYEDACGELEFRNDETMRSLRVRLVDAAQYEKRERFYIELGTPRWMHRGISALLLAQAEGERQLSAEEEDARRIAEMGKPVLGENRRLEIIIEESYDFKNTVDKLMKKTNLATVIGTHSWREQFLEAITVSAGGEEEEDEGREERLPSCFDYVMHFLTVFWKVLFACVPPTAYCNGWACFGVSIVVLGLLTALIGDLAAHFGCTVGLKDSVNAVVFVALGTSIPDTFASKVAALQDPCADASIGNVTGSNAVNVFLGLGLAWSVAAVYWACRGRPFEVRAGTLAFSVTLFTVFAFVAIGVLLLRRRGAVGGELGGPRGPKILTTGLFLALWLLYVLFASLEAYCHIRGF
SIO_010081: LOC101879787
subclass of: SO_0000673
so part of: LOC101879787
location: join(490798..492311,494551..494654,495055..495072,495761..495885,496434..496538,497714..497984,499028..499404)
location: region:490798-499404:1
so has part: feature:490798-492311:1:exon
so has part: feature:494551-494654:1:exon
so has part: feature:495055-495072:1:exon
so has part: feature:495761-495885:1:exon
so has part: feature:496434-496538:1:exon
so has part: feature:497714-497984:1:exon
so has part: feature:499028-499404:1:exon

XP_033928081.1
type: Protein
SIO_000068: ncbiprotein

position:490798:1
position: 490798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490798-492311:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:494551-494654:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:495055-495072:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:495761-495885:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:496434-496538:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:497714-497984:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:499028-499404:1:exon

LOC117437617
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437617
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 502529..509707
location: region:502529-509707:1
so has part: feature:502529-509707:1:exon
subclass of: SO_0000010

117437617
type: Gene
SIO_000068: ncbigene

position:502529:1
position: 502529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:509707:1
position: 509707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:502529-509707:1:exon

LOC117437617
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437617
product: proteasome 26S subunit, non-ATPase 8
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072148.1
SIO_010081: LOC117437617
subclass of: SO_0000673
so part of: LOC117437617
location: join(502529..502726,504113..504185,504721..504823,505765..505930,507175..507275,508555..508665,509530..509707)
location: region:502529-509707:1
so has part: feature:502529-502726:1:exon
so has part: feature:504113-504185:1:exon
so has part: feature:504721-504823:1:exon
so has part: feature:505765-505930:1:exon
so has part: feature:507175-507275:1:exon
so has part: feature:508555-508665:1:exon
so has part: feature:509530-509707:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:502529-502726:1:exon

position:502726:1
position: 502726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:504113-504185:1:exon

position:504113:1
position: 504113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:504185:1
position: 504185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:504721-504823:1:exon

position:504721:1
position: 504721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:504823:1
position: 504823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:505765-505930:1:exon

position:505765:1
position: 505765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:505930:1
position: 505930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:507175-507275:1:exon

position:507175:1
position: 507175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:507275:1
position: 507275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:508555-508665:1:exon

position:508555:1
position: 508555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:508665:1
position: 508665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:509530-509707:1:exon

position:509530:1
position: 509530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437617
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437617
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: 26S proteasome non-ATPase regulatory subunit 8
translation: MAAAGLVLNGAEAAAGLQAAAGVYEQLKGEWNRKSPNLSKCGEALGRLKLALLELNFLPTTGTKLTKQQLILARDILEIGAQWSILRRDIPSFERYMAQLKCYYFDYQEALPESASKHQLLGLNLLFLLSQNRVAEFHTELERLPAPDIQGNVYIRHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCXEKAYEKILFSEATRILFFTTAKKMSDYAKKRGWVLGPNNYYSFLSRQHKAEDATIPSTELAKQVIEYARQLEMIV
SIO_010081: LOC117437617
subclass of: SO_0000673
so part of: LOC117437617
location: join(502580..502726,504113..504185,504721..504823,505765..505930,507175..507275,508555..508665,509530..509667)
location: region:502580-509667:1
so has part: feature:502580-502726:1:exon
so has part: feature:504113-504185:1:exon
so has part: feature:504721-504823:1:exon
so has part: feature:505765-505930:1:exon
so has part: feature:507175-507275:1:exon
so has part: feature:508555-508665:1:exon
so has part: feature:509530-509667:1:exon

XP_033928039.1
type: Protein
SIO_000068: ncbiprotein

position:502580:1
position: 502580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:509667:1
position: 509667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:502580-502726:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:504113-504185:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:504721-504823:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:505765-505930:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:507175-507275:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:508555-508665:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:509530-509667:1:exon

LOC117437615
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437615
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 511177..515339
location: region:511177-515339:1
so has part: feature:511177-515339:1:exon
subclass of: SO_0000010

117437615
type: Gene
SIO_000068: ncbigene

position:511177:1
position: 511177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:515339:1
position: 515339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:511177-515339:1:exon

LOC117437615
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437615
product: Yip1 interacting factor homolog B, membrane trafficking protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_034072146.1
SIO_010081: LOC117437615
subclass of: SO_0000673
so part of: LOC117437615
location: join(511177..511231,511351..511592,511670..511774,512373..512451,512814..512871,513522..513677,514299..514392,515027..515261,515324..515339)
location: region:511177-515339:1
so has part: feature:511177-511231:1:exon
so has part: feature:511351-511592:1:exon
so has part: feature:511670-511774:1:exon
so has part: feature:512373-512451:1:exon
so has part: feature:512814-512871:1:exon
so has part: feature:513522-513677:1:exon
so has part: feature:514299-514392:1:exon
so has part: feature:515027-515261:1:exon
so has part: feature:515324-515339:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:511177-511231:1:exon

position:511231:1
position: 511231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:511351-511592:1:exon

position:511351:1
position: 511351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:511592:1
position: 511592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:511670-511774:1:exon

position:511670:1
position: 511670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:511774:1
position: 511774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:512373-512451:1:exon

position:512373:1
position: 512373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:512451:1
position: 512451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:512814-512871:1:exon

position:512814:1
position: 512814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:512871:1
position: 512871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:513522-513677:1:exon

position:513522:1
position: 513522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:513677:1
position: 513677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:514299-514392:1:exon

position:514299:1
position: 514299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:514392:1
position: 514392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:515027-515261:1:exon

position:515027:1
position: 515027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:515261:1
position: 515261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:515324-515339:1:exon

position:515324:1
position: 515324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437615
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein YIF1B
translation: MEPGRAARHPPKRRVPRMADPHPLFDDTSAVGPGPPRAYGAPVAAAAAAAPTAPSPFPAPAAFLSEPVSSLAAAYGSSLASQGRDIVDRNLDRFIPVGRLKYYFAVDTVYVGKKLGLLLFPFLHQDWQVRYQQDAPVAPRFDVNAPDLYIPVMAFITYILVAGLALGTQSRFSPDSLGLEASSALGWLLLELVAVLLCLYLLSISTDLSTMELLAMAGYKYVGMIIGLLSGLLFGRPGYYVVLSWCCFSIFIFMIRTLRLKLLSEAAAEGVPVRGARNQLRMYLTMGIAAVQPLGMYGLTRHLLP
SIO_010081: LOC117437615
subclass of: SO_0000673
so part of: LOC117437615
location: join(511204..511231,511351..511592,511670..511774,512373..512451,512814..512871,513522..513677,514299..514392,515027..515182)
location: region:511204-515182:1
so has part: feature:511204-511231:1:exon
so has part: feature:511351-511592:1:exon
so has part: feature:511670-511774:1:exon
so has part: feature:512373-512451:1:exon
so has part: feature:512814-512871:1:exon
so has part: feature:513522-513677:1:exon
so has part: feature:514299-514392:1:exon
so has part: feature:515027-515182:1:exon

XP_033928037.1
type: Protein
SIO_000068: ncbiprotein

position:511204:1
position: 511204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:515182:1
position: 515182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:511204-511231:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:511351-511592:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:511670-511774:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:512373-512451:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:512814-512871:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:513522-513677:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:514299-514392:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:515027-515182:1:exon

LOC117437604
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437604
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(519949..523375)
location: region:519949-523375:-1
so has part: feature:519949-523375:-1:exon
subclass of: SO_0000010

117437604
type: Gene
SIO_000068: ncbigene

position:519949:-1
position: 519949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:523375:-1
position: 523375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:519949-523375:-1:exon

LOC117437604
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437604
product: serine peptidase inhibitor, Kunitz type 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072116.1
SIO_010081: LOC117437604
subclass of: SO_0000673
so part of: LOC117437604
location: complement(join(519949..520118,520897..520944,521211..521375,523287..523375))
location: region:519949-523375:-1
so has part: feature:523287-523375:-1:exon
so has part: feature:521211-521375:-1:exon
so has part: feature:520897-520944:-1:exon
so has part: feature:519949-520118:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:523287-523375:-1:exon

position:523287:-1
position: 523287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:521211-521375:-1:exon

position:521211:-1
position: 521211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:521375:-1
position: 521375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:520897-520944:-1:exon

position:520897:-1
position: 520897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:520944:-1
position: 520944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:519949-520118:-1:exon

position:520118:-1
position: 520118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437604
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437604
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kunitz-type protease inhibitor 2
translation: MAVGRCRAAVPRFWFNSTSGSCQSFTYGGCDGNANNFPTERECGRAAVNLLHRSLPWPSADSSYAAHCLVPAQTGPCRASFPRWFYSARDGSCRRFTYGGCQGNGNNYGSREACEERCARG
SIO_010081: LOC117437604
subclass of: SO_0000673
so part of: LOC117437604
location: complement(join(519949..520118,520897..520944,521211..521358))
location: region:519949-521358:-1
so has part: feature:521211-521358:-1:exon
so has part: feature:520897-520944:-1:exon
so has part: feature:519949-520118:-1:exon

XP_033928007.1
type: Protein
SIO_000068: ncbiprotein

position:521358:-1
position: 521358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521211-521358:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:520897-520944:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:519949-520118:-1:exon

LOC117437610
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437610
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 524822..525451
location: region:524822-525451:1
so has part: feature:524822-525451:1:exon
subclass of: SO_0000010

117437610
type: Gene
SIO_000068: ncbigene

position:524822:1
position: 524822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:525451:1
position: 525451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:524822-525451:1:exon

LOC117437610
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437610
product: SH3KBP1-binding protein 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072138.1
SIO_010081: LOC117437610
subclass of: SO_0000673
so part of: LOC117437610
location: join(524822..525007,525081..525451)
location: region:524822-525451:1
so has part: feature:524822-525007:1:exon
so has part: feature:525081-525451:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:524822-525007:1:exon

position:525007:1
position: 525007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:525081-525451:1:exon

position:525081:1
position: 525081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437610
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH3KBP1-binding protein 1-like
translation: MAPMGAGPRRRWSLNLGVPAEALFFVGNQLIATSPGGTIGVWNAVTKHWQVQDVVPITSYDAAGTFLLLGCSNGSI
SIO_010081: LOC117437610
subclass of: SO_0000673
so part of: LOC117437610
location: join(524858..525007,525081..525161)
location: region:524858-525161:1
so has part: feature:524858-525007:1:exon
so has part: feature:525081-525161:1:exon

XP_033928029.1
type: Protein
SIO_000068: ncbiprotein

position:524858:1
position: 524858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:525161:1
position: 525161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:524858-525007:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:525081-525161:1:exon

LOC117437605
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437605
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 525241..528167
location: region:525241-528167:1
so has part: feature:525241-528167:1:exon
subclass of: SO_0000010

117437605
type: Gene
SIO_000068: ncbigene

position:525241:1
position: 525241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:528167:1
position: 528167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:525241-528167:1:exon

LOC117437605
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437605
product: SH3KBP1-binding protein 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 84% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072117.1
SIO_010081: LOC117437605
subclass of: SO_0000673
so part of: LOC117437605
location: join(525241..525359,525428..525597,526463..526603,526687..526783,527770..527948,528031..528167)
location: region:525241-528167:1
so has part: feature:525241-525359:1:exon
so has part: feature:525428-525597:1:exon
so has part: feature:526463-526603:1:exon
so has part: feature:526687-526783:1:exon
so has part: feature:527770-527948:1:exon
so has part: feature:528031-528167:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:525241-525359:1:exon

position:525359:1
position: 525359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:525428-525597:1:exon

position:525428:1
position: 525428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:525597:1
position: 525597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:526463-526603:1:exon

position:526463:1
position: 526463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:526603:1
position: 526603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:526687-526783:1:exon

position:526687:1
position: 526687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:526783:1
position: 526783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:527770-527948:1:exon

position:527770:1
position: 527770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:527948:1
position: 527948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:528031-528167:1:exon

position:528031:1
position: 528031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437605
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH3KBP1-binding protein 1-like
translation: MCRKFPLRMKDNDLLVTELYRDPGEDAVTAPQCLPHPQDQELGTGSKIAYVTSSGVVRVIVQHPETMGSGPQLFQTFTVHRSPVTRIMLSEKHLVSVCADNHHVRSWTVTRFRGMLSTQPGSTPLASFKVLALDDAAGAGTDIGPFGEREEQQVFIQRVVPDACQVFIRLSSTGKKIGEVRAVDGASITAFTVHECEGSSRIGSRPRRLLATGHANGSLQLWDLTTAMDRANKPPDAEGLSEEELLQQLDQCDLALPGPPRTHG
SIO_010081: LOC117437605
subclass of: SO_0000673
so part of: LOC117437605
location: join(525241..525359,525428..525597,526463..526603,526687..526783,527770..527948,528031..528119)
location: region:525241-528119:1
so has part: feature:525241-525359:1:exon
so has part: feature:525428-525597:1:exon
so has part: feature:526463-526603:1:exon
so has part: feature:526687-526783:1:exon
so has part: feature:527770-527948:1:exon
so has part: feature:528031-528119:1:exon

XP_033928008.1
type: Protein
SIO_000068: ncbiprotein

position:528119:1
position: 528119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:525241-525359:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:525428-525597:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:526463-526603:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:526687-526783:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:527770-527948:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528031-528119:1:exon

LOC117437606
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437606
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 529566..551104
location: region:529566-551104:1
so has part: feature:529566-551104:1:exon
subclass of: SO_0000010

117437606
type: Gene
SIO_000068: ncbigene

position:529566:1
position: 529566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:551104:1
position: 551104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:529566-551104:1:exon

LOC117437606
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437606
product: latent transforming growth factor beta binding protein 4
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072118.1
SIO_010081: LOC117437606
subclass of: SO_0000673
so part of: LOC117437606
location: join(529566..529585,530011..530255,533020..533150,533192..533261,533786..534016,534655..534751,534853..534915,535481..535603,536476..536641,537212..537358,537454..537939,538806..538931,539795..539920,540008..540133,540347..540466,541725..541850,542542..542664,542738..542869,544869..544997,545997..546353,546689..546754,546941..547069,547807..547953,548053..548205,549124..549306,549378..549521,550169..550294,550947..551104)
location: region:529566-551104:1
so has part: feature:529566-529585:1:exon
so has part: feature:530011-530255:1:exon
so has part: feature:533020-533150:1:exon
so has part: feature:533192-533261:1:exon
so has part: feature:533786-534016:1:exon
so has part: feature:534655-534751:1:exon
so has part: feature:534853-534915:1:exon
so has part: feature:535481-535603:1:exon
so has part: feature:536476-536641:1:exon
so has part: feature:537212-537358:1:exon
so has part: feature:537454-537939:1:exon
so has part: feature:538806-538931:1:exon
so has part: feature:539795-539920:1:exon
so has part: feature:540008-540133:1:exon
so has part: feature:540347-540466:1:exon
so has part: feature:541725-541850:1:exon
so has part: feature:542542-542664:1:exon
so has part: feature:542738-542869:1:exon
so has part: feature:544869-544997:1:exon
so has part: feature:545997-546353:1:exon
so has part: feature:546689-546754:1:exon
so has part: feature:546941-547069:1:exon
so has part: feature:547807-547953:1:exon
so has part: feature:548053-548205:1:exon
so has part: feature:549124-549306:1:exon
so has part: feature:549378-549521:1:exon
so has part: feature:550169-550294:1:exon
so has part: feature:550947-551104:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:529566-529585:1:exon

position:529585:1
position: 529585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:530011-530255:1:exon

position:530011:1
position: 530011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:530255:1
position: 530255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:533020-533150:1:exon

position:533020:1
position: 533020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:533150:1
position: 533150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:533192-533261:1:exon

position:533192:1
position: 533192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:533261:1
position: 533261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:533786-534016:1:exon

position:533786:1
position: 533786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:534016:1
position: 534016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:534655-534751:1:exon

position:534655:1
position: 534655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:534751:1
position: 534751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:534853-534915:1:exon

position:534853:1
position: 534853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:534915:1
position: 534915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:535481-535603:1:exon

position:535481:1
position: 535481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:535603:1
position: 535603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:536476-536641:1:exon

position:536476:1
position: 536476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:536641:1
position: 536641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:537212-537358:1:exon

position:537212:1
position: 537212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:537358:1
position: 537358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:537454-537939:1:exon

position:537454:1
position: 537454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:537939:1
position: 537939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:538806-538931:1:exon

position:538806:1
position: 538806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:538931:1
position: 538931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:539795-539920:1:exon

position:539795:1
position: 539795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:539920:1
position: 539920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:540008-540133:1:exon

position:540008:1
position: 540008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:540133:1
position: 540133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:540347-540466:1:exon

position:540347:1
position: 540347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:540466:1
position: 540466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:541725-541850:1:exon

position:541725:1
position: 541725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:541850:1
position: 541850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:542542-542664:1:exon

position:542542:1
position: 542542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:542664:1
position: 542664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:542738-542869:1:exon

position:542738:1
position: 542738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:542869:1
position: 542869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:544869-544997:1:exon

position:544869:1
position: 544869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:544997:1
position: 544997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:545997-546353:1:exon

position:545997:1
position: 545997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:546353:1
position: 546353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:546689-546754:1:exon

position:546689:1
position: 546689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:546754:1
position: 546754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:546941-547069:1:exon

position:546941:1
position: 546941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:547069:1
position: 547069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:547807-547953:1:exon

position:547807:1
position: 547807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:547953:1
position: 547953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:548053-548205:1:exon

position:548053:1
position: 548053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:548205:1
position: 548205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:549124-549306:1:exon

position:549124:1
position: 549124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:549306:1
position: 549306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:549378-549521:1:exon

position:549378:1
position: 549378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:549521:1
position: 549521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:550169-550294:1:exon

position:550169:1
position: 550169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:550294:1
position: 550294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:550947-551104:1:exon

position:550947:1
position: 550947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437606
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437606
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: latent-transforming growth factor beta-binding protein 4
translation: MRAPTAAFGLDAVDGARAAAAGGGCACAVGAGCRYRRGGGGGSVSSSPPPGAASGAAAAAAAPESVPTGTRRRWRAEPPPPAGSGFRLVLCPLLCQNGGVCARPDSCLCPPHFTGRFCHLPANGTGGGGGPSGGPQALTRSVYTLPLANHREEEDGAQSMVSVHVQHPPEASVTIHHVERVRGXGRREEPPHPPPQTVPRAPPPPPGRGDLRGSPNGEGAAYGRCFREMRGGECSSPLPGLRTQDICCRGGAGVAWGVHECEPCAELPQLDAPCPPGFQLQNGSCEDVDECGRGGFCRNGICTNTRGSFACLCPPGFLLDASRSSCISQQVLSEARGPCFRVLRSGRCALPTLRNITRQICCCSRVGKAWGGSCLRCPPPGSEGFKEICPAGPGYHYSASDLRFNARYLGQDLPRVPLGRPRTSTAAPPATPPWHQEQQMGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGSGPGLGPGPGSGPGSGPGLGPPPIVTPLPATTTRPPRPPHEPPPAPEVIVVPRPTMGLLGPIPTPEAPAGTVCERNPQLCGPGRCVPHRGGYSCRCHPGFWLSTQGTHCIDVDECRRSPRPCTHGRCENTVGSYRCLCHAGYQPSAAGTECQDVDECAQSPPPCTHGRCENLPGSYRCLCPTGYRAAAPGEPCQDIDECENEAACPGQECLNTAGSFQCRPCRGGFRPHRGRCTDINECLEGDFCFPHGECLNTEGSFTCLCAQGFTRTAAGTACIDIDECQRGVLCAGGLCVNTDGSFECRCPPGFRTDAEQAQCHDVDECREYGGSLCGAQRCENEPGSYRCVSECQPGYRRDRGGHCVDVDECSHNGTLCGAHASCLNLPGSFQCACDPGYETAPHGHHCVDVNECESLRGVCGSERCENADGSFLCLCPDGGHEFDPVTGRCVAPPPSAGPAPFPAAGPAPFPAAVLSSAPSGSAGCYSRDCRRMAHSATQRQCCCSLGWAWGERCPPPPGGRCPQPGSQDHDALCPHGPGRAEDTEGDPVDVDECSLFTPLLCRGGVCVNAAPGFSCYCPSGFYYEPEHLQCVDNDECSAAESEPCVGGLCTNTVGSFHCSCPPPLVLDASQRRCVHNDSSLEAAQDVCWQEVGADLVCARPRVHAPMTYSECCCRYGQAWGMECALCPAPGSDDFELLCNVLRPPSYGPPLPPPAYEYAPDFAPPFGLPFGFFGGPPHAPPPFFRPDYDPYGIDRGRGPRYEPPPGPPWALQPHGDPPRGYPEERGGGEEEEEEEEEEGEEADPAQCAVLSGCHHGRCVRVPDGFTCACDRGFRLDPARLDCVDVDECALGAPCRPGGCINTPGSFRCLCPPGHAPAPRPPPRAACARPPPSPRA
SIO_010081: LOC117437606
subclass of: SO_0000673
so part of: LOC117437606
location: join(529566..529585,530011..530255,533020..533150,533192..533261,533786..534016,534655..534751,534853..534915,535481..535603,536476..536641,537212..537358,537454..537939,538806..538931,539795..539920,540008..540133,540347..540466,541725..541850,542542..542664,542738..542869,544869..544997,545997..546353,546689..546754,546941..547069,547807..547953,548053..548205,549124..549306,549378..549521,550169..550294,550947..551104)
location: region:529566-551104:1
so has part: feature:529566-529585:1:exon
so has part: feature:530011-530255:1:exon
so has part: feature:533020-533150:1:exon
so has part: feature:533192-533261:1:exon
so has part: feature:533786-534016:1:exon
so has part: feature:534655-534751:1:exon
so has part: feature:534853-534915:1:exon
so has part: feature:535481-535603:1:exon
so has part: feature:536476-536641:1:exon
so has part: feature:537212-537358:1:exon
so has part: feature:537454-537939:1:exon
so has part: feature:538806-538931:1:exon
so has part: feature:539795-539920:1:exon
so has part: feature:540008-540133:1:exon
so has part: feature:540347-540466:1:exon
so has part: feature:541725-541850:1:exon
so has part: feature:542542-542664:1:exon
so has part: feature:542738-542869:1:exon
so has part: feature:544869-544997:1:exon
so has part: feature:545997-546353:1:exon
so has part: feature:546689-546754:1:exon
so has part: feature:546941-547069:1:exon
so has part: feature:547807-547953:1:exon
so has part: feature:548053-548205:1:exon
so has part: feature:549124-549306:1:exon
so has part: feature:549378-549521:1:exon
so has part: feature:550169-550294:1:exon
so has part: feature:550947-551104:1:exon

XP_033928009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:529566-529585:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:530011-530255:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:533020-533150:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:533192-533261:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:533786-534016:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:534655-534751:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:534853-534915:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:535481-535603:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:536476-536641:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:537212-537358:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:537454-537939:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:538806-538931:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:539795-539920:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:540008-540133:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:540347-540466:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:541725-541850:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:542542-542664:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:542738-542869:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:544869-544997:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:545997-546353:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:546689-546754:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:546941-547069:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:547807-547953:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:548053-548205:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:549124-549306:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:549378-549521:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:550169-550294:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:550947-551104:1:exon

LOC115945880
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC115945880
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(557423..562719)
location: region:557423-562719:-1
so has part: feature:557423-562719:-1:exon
subclass of: SO_0000010

115945880
type: Gene
SIO_000068: ncbigene

position:557423:-1
position: 557423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:562719:-1
position: 562719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:557423-562719:-1:exon

LOC115945880
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC115945880
product: phospholipase D family member 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072131.1
SIO_010081: LOC115945880
subclass of: SO_0000673
so part of: LOC115945880
location: complement(join(557423..557681,557766..557865,558200..558365,558471..558610,558863..559063,559509..559636,560199..560319,560408..560591,561827..562002,562083..562158,562676..562719))
location: region:557423-562719:-1
so has part: feature:562676-562719:-1:exon
so has part: feature:562083-562158:-1:exon
so has part: feature:561827-562002:-1:exon
so has part: feature:560408-560591:-1:exon
so has part: feature:560199-560319:-1:exon
so has part: feature:559509-559636:-1:exon
so has part: feature:558863-559063:-1:exon
so has part: feature:558471-558610:-1:exon
so has part: feature:558200-558365:-1:exon
so has part: feature:557766-557865:-1:exon
so has part: feature:557423-557681:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:562676-562719:-1:exon

position:562676:-1
position: 562676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:562083-562158:-1:exon

position:562083:-1
position: 562083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:562158:-1
position: 562158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:561827-562002:-1:exon

position:561827:-1
position: 561827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:562002:-1
position: 562002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:560408-560591:-1:exon

position:560408:-1
position: 560408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:560591:-1
position: 560591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:560199-560319:-1:exon

position:560199:-1
position: 560199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:560319:-1
position: 560319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:559509-559636:-1:exon

position:559509:-1
position: 559509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:559636:-1
position: 559636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:558863-559063:-1:exon

position:558863:-1
position: 558863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:559063:-1
position: 559063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:558471-558610:-1:exon

position:558471:-1
position: 558471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:558610:-1
position: 558610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:558200-558365:-1:exon

position:558200:-1
position: 558200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:558365:-1
position: 558365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:557766-557865:-1:exon

position:557766:-1
position: 557766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:557865:-1
position: 557865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:557423-557681:-1:exon

position:557681:-1
position: 557681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115945880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC115945880
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 5'-3' exonuclease PLD3
translation: MRSHSTYKQLQVGARRGSIGINGIPQLWNVGLALLLLLLLFLPLLLWLLPDGSRGGRGEAGACGASCSIVLVESIPEGMSFGSGSIPTPSTFSAWMQLLLSVRHSIDIASFYWTMTNTDTGTAEASAAQGERILQELLRLPQRGINVRVAVNRPSASAPIGDLVELERSGAAVRTVDLPRLTGGVLHTKFWLVDGTHLYLGSANMDWRSLTQVKELGAAVYNCTCMAQDLGKIFEAYWALGVPGATIPVPWPANYSTAFNAETPLELQLNGTAAAVYFSSSPPALCADGRTTDLSALLSVIDAAEAFVDVAVMSFLPTTEFSHPQRFWPVIDNALRRAVVERRVRVRLLLGCWRHSQTTMFPFLKSLAAVADNRTHYSVAVRLFMVPTSAAQARIPYARVNHNKYMVTETTAYIGTSNWSGDYFTQTAGSALVVNQTVNATGTGTGTVREQLEAVFERDWSSQYSADIGEPERWQSRCGSR
SIO_010081: LOC115945880
subclass of: SO_0000673
so part of: LOC115945880
location: complement(join(557479..557681,557766..557865,558200..558365,558471..558610,558863..559063,559509..559636,560199..560319,560408..560591,561827..562002,562083..562109))
location: region:557479-562109:-1
so has part: feature:562083-562109:-1:exon
so has part: feature:561827-562002:-1:exon
so has part: feature:560408-560591:-1:exon
so has part: feature:560199-560319:-1:exon
so has part: feature:559509-559636:-1:exon
so has part: feature:558863-559063:-1:exon
so has part: feature:558471-558610:-1:exon
so has part: feature:558200-558365:-1:exon
so has part: feature:557766-557865:-1:exon
so has part: feature:557479-557681:-1:exon

XP_033928022.1
type: Protein
SIO_000068: ncbiprotein

position:557479:-1
position: 557479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:562109:-1
position: 562109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:562083-562109:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:561827-562002:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:560408-560591:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:560199-560319:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:559509-559636:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:558863-559063:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:558471-558610:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:558200-558365:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:557766-557865:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:557479-557681:-1:exon

LOC115947455
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC115947455
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 562672..569005
location: region:562672-569005:1
so has part: feature:562672-569005:1:exon
subclass of: SO_0000010

115947455
type: Gene
SIO_000068: ncbigene

position:562672:1
position: 562672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:569005:1
position: 569005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:562672-569005:1:exon

LOC115947455
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC115947455
product: chromosome 24 C19orf47 homolog, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072133.1
SIO_010081: LOC115947455
subclass of: SO_0000673
so part of: LOC115947455
location: join(562672..562783,564122..564179,564368..564455,564542..564656,566109..566190,566324..566443,566687..566836,566921..566991,567132..569005)
location: region:562672-569005:1
so has part: feature:562672-562783:1:exon
so has part: feature:564122-564179:1:exon
so has part: feature:564368-564455:1:exon
so has part: feature:564542-564656:1:exon
so has part: feature:566109-566190:1:exon
so has part: feature:566324-566443:1:exon
so has part: feature:566687-566836:1:exon
so has part: feature:566921-566991:1:exon
so has part: feature:567132-569005:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:562672-562783:1:exon

position:562783:1
position: 562783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:564122-564179:1:exon

position:564122:1
position: 564122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:564179:1
position: 564179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:564368-564455:1:exon

position:564368:1
position: 564368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:564455:1
position: 564455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:564542-564656:1:exon

position:564542:1
position: 564542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:564656:1
position: 564656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:566109-566190:1:exon

position:566109:1
position: 566109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:566190:1
position: 566190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:566324-566443:1:exon

position:566324:1
position: 566324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:566443:1
position: 566443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:566687-566836:1:exon

position:566687:1
position: 566687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:566836:1
position: 566836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:566921-566991:1:exon

position:566921:1
position: 566921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:566991:1
position: 566991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:567132-569005:1:exon

position:567132:1
position: 567132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115947455
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC115947455
product: chromosome 24 C19orf47 homolog, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_034072134.1
SIO_010081: LOC115947455
subclass of: SO_0000673
so part of: LOC115947455
location: join(562758..562793,564122..564179,564368..564455,564542..564656,566109..566190,566324..566443,566687..566836,566921..566991,567132..569005)
location: region:562758-569005:1
so has part: feature:562758-562793:1:exon
so has part: feature:564122-564179:1:exon
so has part: feature:564368-564455:1:exon
so has part: feature:564542-564656:1:exon
so has part: feature:566109-566190:1:exon
so has part: feature:566324-566443:1:exon
so has part: feature:566687-566836:1:exon
so has part: feature:566921-566991:1:exon
so has part: feature:567132-569005:1:exon

position:562758:1
position: 562758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:562758-562793:1:exon

position:562793:1
position: 562793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:564122-564179:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:564368-564455:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:564542-564656:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:566109-566190:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:566324-566443:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:566687-566836:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:566921-566991:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:567132-569005:1:exon

LOC115947455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC115947455
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C19orf47 homolog
translation: MVSVTMATSEWIQFFKEAGIPPGPAVSYAVMFVDNRIRKNMLLDLTKELMNELGITVVGDVIAILKHAKVVHRQEMCKAATDLLCPGSSPLQADLRRSTNSAASRMIANSLSREALPNAPLQPHGSKISITVPNQPAAAKAGFGNAAAGIAPIPVKRRRVTAEMEGKYIITMPKGTTPRTRKILEQQQAAKGLPRASVFDRLGAEAKGDPAAGGKPSGVFSRLGDSHRDKSMGSDEDDDGSALPYAGVLKKPKASRKESAAPGMPVTAPASSSEAKAIPSLRNGAGMRAPGCGREDEDAVSSSSSGRENSKREWRVLIRRTWGCGKGSSSEARMDSAGSVSVFQRLGKKPD
SIO_010081: LOC115947455
subclass of: SO_0000673
so part of: LOC115947455
location: join(564161..564179,564368..564455,564542..564656,566109..566190,566324..566443,566687..566836,566921..566991,567132..567542)
location: region:564161-567542:1
so has part: feature:564161-564179:1:exon
so has part: feature:564368-564455:1:exon
so has part: feature:564542-564656:1:exon
so has part: feature:566109-566190:1:exon
so has part: feature:566324-566443:1:exon
so has part: feature:566687-566836:1:exon
so has part: feature:566921-566991:1:exon
so has part: feature:567132-567542:1:exon

XP_033928024.1
type: Protein
SIO_000068: ncbiprotein

position:564161:1
position: 564161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:567542:1
position: 567542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:564161-564179:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:564368-564455:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:564542-564656:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:566109-566190:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:566324-566443:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:566687-566836:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:566921-566991:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:567132-567542:1:exon

LOC115947455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC115947455
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C19orf47 homolog
translation: MVSVTMATSEWIQFFKEAGIPPGPAVSYAVMFVDNRIRKNMLLDLTKELMNELGITVVGDVIAILKHAKVVHRQEMCKAATDLLCPGSSPLQADLRRSTNSAASRMIANSLSREALPNAPLQPHGSKISITVPNQPAAAKAGFGNAAAGIAPIPVKRRRVTAEMEGKYIITMPKGTTPRTRKILEQQQAAKGLPRASVFDRLGAEAKGDPAAGGKPSGVFSRLGDSHRDKSMGSDEDDDGSALPYAGVLKKPKASRKESAAPGMPVTAPASSSEAKAIPSLRNGAGMRAPGCGREDEDAVSSSSSGRENSKREWRVLIRRTWGCGKGSSSEARMDSAGSVSVFQRLGKKPD
SIO_010081: LOC115947455
subclass of: SO_0000673
so part of: LOC115947455
location: join(564161..564179,564368..564455,564542..564656,566109..566190,566324..566443,566687..566836,566921..566991,567132..567542)
location: region:564161-567542:1
so has part: feature:564161-564179:1:exon
so has part: feature:564368-564455:1:exon
so has part: feature:564542-564656:1:exon
so has part: feature:566109-566190:1:exon
so has part: feature:566324-566443:1:exon
so has part: feature:566687-566836:1:exon
so has part: feature:566921-566991:1:exon
so has part: feature:567132-567542:1:exon

XP_033928025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:564161-564179:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:564368-564455:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:564542-564656:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:566109-566190:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:566324-566443:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:566687-566836:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:566921-566991:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:567132-567542:1:exon

LOC101878258
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC101878258
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 569121..575685
location: region:569121-575685:1
so has part: feature:569121-575685:1:exon
subclass of: SO_0000010

101878258
type: Gene
SIO_000068: ncbigene

position:569121:1
position: 569121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:575685:1
position: 575685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:569121-575685:1:exon

LOC101878258
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC101878258
product: AKT serine/threonine kinase 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 50 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072132.1
SIO_010081: LOC101878258
subclass of: SO_0000673
so part of: LOC101878258
location: join(569121..569311,570292..570367,570459..570587,570926..571037,571123..571273,571352..571483,571563..571628,571706..571774,571922..572044,572339..572467,573430..573644,574342..574429,575185..575287,575585..575685)
location: region:569121-575685:1
so has part: feature:569121-569311:1:exon
so has part: feature:570292-570367:1:exon
so has part: feature:570459-570587:1:exon
so has part: feature:570926-571037:1:exon
so has part: feature:571123-571273:1:exon
so has part: feature:571352-571483:1:exon
so has part: feature:571563-571628:1:exon
so has part: feature:571706-571774:1:exon
so has part: feature:571922-572044:1:exon
so has part: feature:572339-572467:1:exon
so has part: feature:573430-573644:1:exon
so has part: feature:574342-574429:1:exon
so has part: feature:575185-575287:1:exon
so has part: feature:575585-575685:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:569121-569311:1:exon

position:569311:1
position: 569311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:570292-570367:1:exon

position:570292:1
position: 570292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:570367:1
position: 570367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:570459-570587:1:exon

position:570459:1
position: 570459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:570587:1
position: 570587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:570926-571037:1:exon

position:570926:1
position: 570926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:571037:1
position: 571037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:571123-571273:1:exon

position:571123:1
position: 571123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:571273:1
position: 571273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:571352-571483:1:exon

position:571352:1
position: 571352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:571483:1
position: 571483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:571563-571628:1:exon

position:571563:1
position: 571563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:571628:1
position: 571628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:571706-571774:1:exon

position:571706:1
position: 571706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:571774:1
position: 571774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:571922-572044:1:exon

position:571922:1
position: 571922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:572044:1
position: 572044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:572339-572467:1:exon

position:572339:1
position: 572339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:572467:1
position: 572467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:573430-573644:1:exon

position:573430:1
position: 573430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:573644:1
position: 573644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:574342-574429:1:exon

position:574342:1
position: 574342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:574429:1
position: 574429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:575185-575287:1:exon

position:575185:1
position: 575185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:575287:1
position: 575287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:575585-575685:1:exon

position:575585:1
position: 575585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC101878258
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC101878258
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RAC-beta serine/threonine-protein kinase
translation: MTEVLVVKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKERPESPEQALPPLNNFSVAECQLMKTERPRPNTFVIRCLQWTTVIERTFHVDTPEEREEWMRAIQTVANSLKNQEPEVDPMEYKCGSMDGPGAEEMEVAMGKSRAKATMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTNDRLCFVMEYANGGELFFHLSRERVFTEDRARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMLCGRLPFYNQDHERLFELILLEEIRFPRSLAPDARALLAGLLKKDPKQRLGGGPRDAQEVMEHRFFASINWQDVVQRKLVPPFKPQVTSEVDTRYFDDEFTAQSITITPPDRYDALGSPEGEHRTHFPQFSYSASIRE
SIO_010081: LOC101878258
subclass of: SO_0000673
so part of: LOC101878258
location: join(570322..570367,570459..570587,570926..571037,571123..571273,571352..571483,571563..571628,571706..571774,571922..572044,572339..572467,573430..573644,574342..574429,575185..575287,575585..575664)
location: region:570322-575664:1
so has part: feature:570322-570367:1:exon
so has part: feature:570459-570587:1:exon
so has part: feature:570926-571037:1:exon
so has part: feature:571123-571273:1:exon
so has part: feature:571352-571483:1:exon
so has part: feature:571563-571628:1:exon
so has part: feature:571706-571774:1:exon
so has part: feature:571922-572044:1:exon
so has part: feature:572339-572467:1:exon
so has part: feature:573430-573644:1:exon
so has part: feature:574342-574429:1:exon
so has part: feature:575185-575287:1:exon
so has part: feature:575585-575664:1:exon

XP_033928023.1
type: Protein
SIO_000068: ncbiprotein

position:570322:1
position: 570322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:575664:1
position: 575664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:570322-570367:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:570459-570587:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:570926-571037:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:571123-571273:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:571352-571483:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:571563-571628:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:571706-571774:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:571922-572044:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:572339-572467:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:573430-573644:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:574342-574429:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:575185-575287:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:575585-575664:1:exon

LOC117437619
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437619
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(576379..581617)
location: region:576379-581617:-1
so has part: feature:576379-581617:-1:exon
subclass of: SO_0000010

117437619
type: Gene
SIO_000068: ncbigene

position:576379:-1
position: 576379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:581617:-1
position: 581617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:576379-581617:-1:exon

LOC117437619
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437619
product: glutaminyl-peptide cyclotransferase like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_034072151.1
SIO_010081: LOC117437619
subclass of: SO_0000673
so part of: LOC117437619
location: complement(join(576379..576583,577727..577826,579161..579316,579821..580093,580718..580873,581448..581617))
location: region:576379-581617:-1
so has part: feature:581448-581617:-1:exon
so has part: feature:580718-580873:-1:exon
so has part: feature:579821-580093:-1:exon
so has part: feature:579161-579316:-1:exon
so has part: feature:577727-577826:-1:exon
so has part: feature:576379-576583:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:581448-581617:-1:exon

position:581448:-1
position: 581448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:580718-580873:-1:exon

position:580718:-1
position: 580718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:580873:-1
position: 580873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:579821-580093:-1:exon

position:579821:-1
position: 579821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:580093:-1
position: 580093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:579161-579316:-1:exon

position:579161:-1
position: 579161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579316:-1
position: 579316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:577727-577826:-1:exon

position:577727:-1
position: 577727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:577826:-1
position: 577826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:576379-576583:-1:exon

position:576583:-1
position: 576583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437619
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437619
product: glutaminyl-peptide cyclotransferase like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_034072150.1
SIO_010081: LOC117437619
subclass of: SO_0000673
so part of: LOC117437619
location: complement(join(576379..576583,577524..577640,577727..577826,579161..579316,579821..580093,580718..580873,581448..581617))
location: region:576379-581617:-1
so has part: feature:581448-581617:-1:exon
so has part: feature:580718-580873:-1:exon
so has part: feature:579821-580093:-1:exon
so has part: feature:579161-579316:-1:exon
so has part: feature:577727-577826:-1:exon
so has part: feature:577524-577640:-1:exon
so has part: feature:576379-576583:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:581448-581617:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:580718-580873:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:579821-580093:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:579161-579316:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:577727-577826:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:577524-577640:-1:exon

position:577524:-1
position: 577524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:577640:-1
position: 577640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:576379-576583:-1:exon

LOC117437619
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437619
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glutaminyl-peptide cyclotransferase-like protein isoform X2
translation: MRKGSRRPRPPGPVPEPPLPVTGGGLRRPLLPLMAMAAAGLLYCAWPRGGPEPAPPPPDPAVPPPASERSLRQLLERLDPSRLQRRFLRPFLRERVPGGPGSRDVRQHITACLEALGWHVELDAFTAPTPRGAVTFTNVVATAAPGAARRLTLACHYDTKVLPVAGAFVGAVDSAAPCAALLELATALEGPLRRARREGAELTLQLLFLDGEEAFESWSATDSLYGARHLAARMAATRHRSGTGTELSAMSLLVLLDLLGARDPAIHSHFPSTHPWFLRLVRIGVPVLHLIPLPFPPAWHTPEDTERNLHPPTLTDLTRILLIFIAEFLHL
SIO_010081: LOC117437619
subclass of: SO_0000673
so part of: LOC117437619
location: complement(join(576438..576583,577727..577826,579161..579316,579821..580093,580718..580873,581448..581612))
location: region:576438-581612:-1
so has part: feature:581448-581612:-1:exon
so has part: feature:580718-580873:-1:exon
so has part: feature:579821-580093:-1:exon
so has part: feature:579161-579316:-1:exon
so has part: feature:577727-577826:-1:exon
so has part: feature:576438-576583:-1:exon

XP_033928042.1
type: Protein
SIO_000068: ncbiprotein

position:576438:-1
position: 576438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:581612:-1
position: 581612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:581448-581612:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:580718-580873:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:579821-580093:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:579161-579316:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:577727-577826:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:576438-576583:-1:exon

LOC117437619
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437619
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glutaminyl-peptide cyclotransferase-like protein isoform X1
translation: MRKGSRRPRPPGPVPEPPLPVTGGGLRRPLLPLMAMAAAGLLYCAWPRGGPEPAPPPPDPAVPPPASERSLRQLLERLDPSRLQRRFLRPFLRERVPGGPGSRDVRQHITACLEALGWHVELDAFTAPTPRGAVTFTNVVATAAPGAARRLTLACHYDTKVLPVAGAFVGAVDSAAPCAALLELATALEGPLRRARREGAELTLQLLFLDGEEAFESWSATDSLYGARHLAARMAATRHRSGTGTELSAMSLLVLLDLLGARDPAIHSHFPSTHPWFLRLVRIEQRLRRMGLLNATPQDPPFFRLSPAPGPVEDDHIPFLQRGVPVLHLIPLPFPPAWHTPEDTERNLHPPTLTDLTRILLIFIAEFLHL
SIO_010081: LOC117437619
subclass of: SO_0000673
so part of: LOC117437619
location: complement(join(576438..576583,577524..577640,577727..577826,579161..579316,579821..580093,580718..580873,581448..581612))
location: region:576438-581612:-1
so has part: feature:581448-581612:-1:exon
so has part: feature:580718-580873:-1:exon
so has part: feature:579821-580093:-1:exon
so has part: feature:579161-579316:-1:exon
so has part: feature:577727-577826:-1:exon
so has part: feature:577524-577640:-1:exon
so has part: feature:576438-576583:-1:exon

XP_033928041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:581448-581612:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:580718-580873:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:579821-580093:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:579161-579316:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:577727-577826:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:577524-577640:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:576438-576583:-1:exon

LOC117437633
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437633
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(583507..586155)
location: region:583507-586155:-1
so has part: feature:583507-586155:-1:exon
subclass of: SO_0000010

117437633
type: Gene
SIO_000068: ncbigene

position:583507:-1
position: 583507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:586155:-1
position: 586155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:583507-586155:-1:exon

LOC117437633
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437633
product: F-box protein 46
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_034072170.1
SIO_010081: LOC117437633
subclass of: SO_0000673
so part of: LOC117437633
location: complement(join(583507..585308,586114..586155))
location: region:583507-586155:-1
so has part: feature:586114-586155:-1:exon
so has part: feature:583507-585308:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:586114-586155:-1:exon

position:586114:-1
position: 586114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:583507-585308:-1:exon

position:585308:-1
position: 585308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437633
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437633
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box only protein 46
translation: MEPNAFPQLQLWCPRPFGTYSQNKPCAGPGSAKKPFSPSCRHTENTPPTGTGTGTGTGTSPPAAAAPPAPPTPASEEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGAGARASTMKVKGNWGSDSSKAKRRRRCHDPGKAKASAVSTGEEAAEAAELVSVAEMVALVEQRAALALQSFPPVLVEAPGGEAKAASAADCSRVAEAVAHFESRHRDGAARPNGLCRPGAECTAAAASAAPGEVRIAFRIASGREPRAGPTTAGTEPGAAARPGCVFVSGAGAGGRAKDKITCDLYRLISPSRDVLPTNVELLLAAAGPKGDGDGDATAAARGEGSASPSAKADACEGAAEAAPGRDCAAGFHVDVVVTGVVDQCVFYGKDSAKQVTEETVRLPAAPKDEPSPPPPPPPGQLFLFPIADEPAAAAPEPEPVSDPALCRLYRHVSHDFLEIRFKIQRLLEPRQYMLLLPEHVMVKIFSYLPTQALAALKCSCHYFKSLIETFGVRATDSRWTRDPLYRDDPCKQCRKRYEKGDVSLCRWHPKPYHHDLPYGRSYWMCCRRPDKEAPGCRVGLHDNNWVHPAPRREDGR
SIO_010081: LOC117437633
subclass of: SO_0000673
so part of: LOC117437633
location: complement(583513..585264)
location: region:583513-585264:-1
so has part: feature:583513-585264:-1:exon

XP_033928061.1
type: Protein
SIO_000068: ncbiprotein

position:583513:-1
position: 583513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:585264:-1
position: 585264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:583513-585264:-1:exon

LOC117437607
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437607
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(587396..597293)
location: region:587396-597293:-1
so has part: feature:587396-597293:-1:exon
subclass of: SO_0000010

117437607
type: Gene
SIO_000068: ncbigene

position:587396:-1
position: 587396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:597293:-1
position: 597293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:587396-597293:-1:exon

LOC117437607
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437607
product: gastric inhibitory polypeptide receptor
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072119.1
SIO_010081: LOC117437607
subclass of: SO_0000673
so part of: LOC117437607
location: complement(join(587396..587564,588999..589040,589678..589817,590505..590593,590987..591056,591149..591209,591761..591920,592802..592949,593864..593967,595572..595693,595767..595874,595952..596039,597237..597293))
location: region:587396-597293:-1
so has part: feature:597237-597293:-1:exon
so has part: feature:595952-596039:-1:exon
so has part: feature:595767-595874:-1:exon
so has part: feature:595572-595693:-1:exon
so has part: feature:593864-593967:-1:exon
so has part: feature:592802-592949:-1:exon
so has part: feature:591761-591920:-1:exon
so has part: feature:591149-591209:-1:exon
so has part: feature:590987-591056:-1:exon
so has part: feature:590505-590593:-1:exon
so has part: feature:589678-589817:-1:exon
so has part: feature:588999-589040:-1:exon
so has part: feature:587396-587564:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:597237-597293:-1:exon

position:597237:-1
position: 597237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:595952-596039:-1:exon

position:595952:-1
position: 595952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:596039:-1
position: 596039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:595767-595874:-1:exon

position:595767:-1
position: 595767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:595874:-1
position: 595874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:595572-595693:-1:exon

position:595572:-1
position: 595572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:595693:-1
position: 595693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:593864-593967:-1:exon

position:593864:-1
position: 593864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:593967:-1
position: 593967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:592802-592949:-1:exon

position:592802:-1
position: 592802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:592949:-1
position: 592949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:591761-591920:-1:exon

position:591761:-1
position: 591761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:591920:-1
position: 591920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:591149-591209:-1:exon

position:591149:-1
position: 591149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:591209:-1
position: 591209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:590987-591056:-1:exon

position:590987:-1
position: 590987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:591056:-1
position: 591056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:590505-590593:-1:exon

position:590505:-1
position: 590505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:590593:-1
position: 590593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:589678-589817:-1:exon

position:589678:-1
position: 589678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:589817:-1
position: 589817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:588999-589040:-1:exon

position:588999:-1
position: 588999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:589040:-1
position: 589040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:587396-587564:-1:exon

position:587564:-1
position: 587564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437607
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437607
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: gastric inhibitory polypeptide receptor
translation: MGHWAATPSLLHRVLRGAEDRSARATFAAWLRYRQACEQRLRLDPPAPGPVCNRSFDLYACWGDAAPNSTASVPCPPYLPWHHRVQGGFVFRRCGPDGHWVSDGTGRPWQDHGQCEDPAPEQPLQRQAWLLEQLRLLYTVGYSLSLVALVLALLLLLLFRRLRCTRNLIHANLFVSFVLRAGSILTRDALLQRRLRVGSAHPLQGLRLEAVAGCRLAQAITQYCVGANYGWLLAEGLFLHKLLVLAAFSGERCLPAFLLLGWGAPLLFVVPWVVVRYLYENEGCWERNEKAAVWWIIRCPILAAVAVNFVVFIRIVRILVAKVRAQQVSRGDTRVRLARSTLTLIPLLGVHEVAFALVGDGPGGGALRLVRLCLQVLLSSSQGLVVSVLYCFVNKEVQAEVRRCWQRCRLSAPRPXPPRGPPRRCRRYEAVGGERPPPPPGTGGHPGAESVC
SIO_010081: LOC117437607
subclass of: SO_0000673
so part of: LOC117437607
location: complement(join(587396..587564,588999..589040,589678..589817,590505..590593,590987..591056,591149..591209,591761..591920,592802..592949,593864..593967,595572..595693,595767..595874,595952..596039,597237..597293))
location: region:587396-597293:-1
so has part: feature:597237-597293:-1:exon
so has part: feature:595952-596039:-1:exon
so has part: feature:595767-595874:-1:exon
so has part: feature:595572-595693:-1:exon
so has part: feature:593864-593967:-1:exon
so has part: feature:592802-592949:-1:exon
so has part: feature:591761-591920:-1:exon
so has part: feature:591149-591209:-1:exon
so has part: feature:590987-591056:-1:exon
so has part: feature:590505-590593:-1:exon
so has part: feature:589678-589817:-1:exon
so has part: feature:588999-589040:-1:exon
so has part: feature:587396-587564:-1:exon

XP_033928010.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:597237-597293:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:595952-596039:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:595767-595874:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:595572-595693:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:593864-593967:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:592802-592949:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:591761-591920:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:591149-591209:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:590987-591056:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:590505-590593:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:589678-589817:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:588999-589040:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:587396-587564:-1:exon

LOC117437638
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437638
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 599347..601325
location: region:599347-601325:1
so has part: feature:599347-601325:1:exon
subclass of: SO_0000010

117437638
type: Gene
SIO_000068: ncbigene

position:599347:1
position: 599347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:601325:1
position: 601325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:599347-601325:1:exon

LOC117437638
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437638
product: outer mitochondrial membrane lipid metabolism regulator OPA3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072177.1
SIO_010081: LOC117437638
subclass of: SO_0000673
so part of: LOC117437638
location: join(599347..599507,600781..601325)
location: region:599347-601325:1
so has part: feature:599347-599507:1:exon
so has part: feature:600781-601325:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:599347-599507:1:exon

position:599507:1
position: 599507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:600781-601325:1:exon

position:600781:1
position: 600781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437638
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437638
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: optic atrophy 3 protein
translation: MVAGAFPLAKLLTLGARQLSRPLAARIKAGARASPFFRTCICLPPAQLYHWVEMRTKMRLMGFRGAAVKPLNEDAAAELGAELLGEAIVFGVGGLCLYLEYARQAGAARRREEEQAAAMRDLRERLDHVQRQLEALGGNSPAGHAPGGQNHAPSGANHAPSGSNHAPSGANHAPSGASPAPSGVNPAPSGANPAPSGVNPAPSGADPAPSGANPSGVATPIKA
SIO_010081: LOC117437638
subclass of: SO_0000673
so part of: LOC117437638
location: join(599366..599507,600781..601310)
location: region:599366-601310:1
so has part: feature:599366-599507:1:exon
so has part: feature:600781-601310:1:exon

XP_033928068.1
type: Protein
SIO_000068: ncbiprotein

position:599366:1
position: 599366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:601310:1
position: 601310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:599366-599507:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:600781-601310:1:exon

LOC117437608
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437608
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(601446..606282)
location: region:601446-606282:-1
so has part: feature:601446-606282:-1:exon
subclass of: SO_0000010

117437608
type: Gene
SIO_000068: ncbigene

position:601446:-1
position: 601446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:606282:-1
position: 606282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:601446-606282:-1:exon

LOC117437608
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437608
product: vasodilator stimulated phosphoprotein
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072120.1
SIO_010081: LOC117437608
subclass of: SO_0000673
so part of: LOC117437608
location: complement(join(601446..601732,601907..601964,602046..602124,602208..602253,602387..602417,602591..602651,602739..602836,602916..603059,603135..603213,603481..603538,603990..604158,606084..606282))
location: region:601446-606282:-1
so has part: feature:606084-606282:-1:exon
so has part: feature:603990-604158:-1:exon
so has part: feature:603481-603538:-1:exon
so has part: feature:603135-603213:-1:exon
so has part: feature:602916-603059:-1:exon
so has part: feature:602739-602836:-1:exon
so has part: feature:602591-602651:-1:exon
so has part: feature:602387-602417:-1:exon
so has part: feature:602208-602253:-1:exon
so has part: feature:602046-602124:-1:exon
so has part: feature:601907-601964:-1:exon
so has part: feature:601446-601732:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:606084-606282:-1:exon

position:606084:-1
position: 606084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:603990-604158:-1:exon

position:603990:-1
position: 603990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:604158:-1
position: 604158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:603481-603538:-1:exon

position:603481:-1
position: 603481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:603538:-1
position: 603538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:603135-603213:-1:exon

position:603135:-1
position: 603135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:603213:-1
position: 603213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:602916-603059:-1:exon

position:602916:-1
position: 602916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:603059:-1
position: 603059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:602739-602836:-1:exon

position:602739:-1
position: 602739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:602836:-1
position: 602836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:602591-602651:-1:exon

position:602591:-1
position: 602591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:602651:-1
position: 602651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:602387-602417:-1:exon

position:602387:-1
position: 602387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:602417:-1
position: 602417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:602208-602253:-1:exon

position:602208:-1
position: 602208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:602253:-1
position: 602253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:602046-602124:-1:exon

position:602046:-1
position: 602046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:602124:-1
position: 602124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:601907-601964:-1:exon

position:601907:-1
position: 601907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:601964:-1
position: 601964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:601446-601732:-1:exon

position:601732:-1
position: 601732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437608
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437608
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: vasodilator-stimulated phosphoprotein
translation: MGAPGPPRSERVLCSARAAVLLYDDPQKQWVPAGGGPQALSCVQLFHHPGTHGFRLVGRKMQPDQQVVLNLALPRGLRYSAVTPQFHQWWGGRRLWGLSFGAPPEAAAFGAAVLRALRALEEGTPVSWPDPDSADDPSPQDRQPLEDPEHRVAASGKRWGGGGHPKTGDPPHLLPRPQPLGSRGPPRFPGGGGGGGGGGGPGFAAAIAGATLRRVKQEEAVGTPPAPPKGGGTGGGGLMEEMNAMLARRRKATLQGDKAASKRDEDITNDEAEPGTRTQEPMRRPWEKGSYTLPRMKSAAPAAPSDPPPPAEEPELERIKQELLEEMRRELQKMKEEIIEAFVMELRKQSPP
SIO_010081: LOC117437608
subclass of: SO_0000673
so part of: LOC117437608
location: complement(join(601695..601732,601907..601964,602046..602124,602208..602253,602387..602417,602591..602651,602739..602836,602916..603059,603135..603213,603481..603538,603990..604158,606084..606282))
location: region:601695-606282:-1
so has part: feature:606084-606282:-1:exon
so has part: feature:603990-604158:-1:exon
so has part: feature:603481-603538:-1:exon
so has part: feature:603135-603213:-1:exon
so has part: feature:602916-603059:-1:exon
so has part: feature:602739-602836:-1:exon
so has part: feature:602591-602651:-1:exon
so has part: feature:602387-602417:-1:exon
so has part: feature:602208-602253:-1:exon
so has part: feature:602046-602124:-1:exon
so has part: feature:601907-601964:-1:exon
so has part: feature:601695-601732:-1:exon

XP_033928011.1
type: Protein
SIO_000068: ncbiprotein

position:601695:-1
position: 601695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:606084-606282:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:603990-604158:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:603481-603538:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:603135-603213:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:602916-603059:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:602739-602836:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:602591-602651:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:602387-602417:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:602208-602253:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:602046-602124:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:601907-601964:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:601695-601732:-1:exon

LOC117437641
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437641
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 607645..609652
location: region:607645-609652:1
so has part: feature:607645-609652:1:exon
subclass of: SO_0000010

117437641
type: Gene
SIO_000068: ncbigene

position:607645:1
position: 607645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:609652:1
position: 609652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:607645-609652:1:exon

LOC117437641
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437641
product: basic salivary proline-rich protein 2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072180.1
SIO_010081: LOC117437641
subclass of: SO_0000673
so part of: LOC117437641
location: join(607645..607787,609159..609203,609299..609652)
location: region:607645-609652:1
so has part: feature:607645-607787:1:exon
so has part: feature:609159-609203:1:exon
so has part: feature:609299-609652:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:607645-607787:1:exon

position:607787:1
position: 607787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:609159-609203:1:exon

position:609159:1
position: 609159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:609203:1
position: 609203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:609299-609652:1:exon

position:609299:1
position: 609299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437641
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437641
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: basic salivary proline-rich protein 2-like
translation: MGQVLGFAHCKEAPSTASTTPDSTEGGPEEPEFPPELAASPEPPEEEEEDEDGGTPPRTPPPRTHLLLHRLWGGGQRPPNRAWPPLPPGPPPGPPPPPGLGCPPPGAGPPYRGQSPPKAARGAPGPPRGAAGGGGGPRWRSP
SIO_010081: LOC117437641
subclass of: SO_0000673
so part of: LOC117437641
location: join(607757..607787,609159..609203,609299..609651)
location: region:607757-609651:1
so has part: feature:607757-607787:1:exon
so has part: feature:609159-609203:1:exon
so has part: feature:609299-609651:1:exon

XP_033928071.1
type: Protein
SIO_000068: ncbiprotein

position:607757:1
position: 607757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:609651:1
position: 609651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:607757-607787:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:609159-609203:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:609299-609651:1:exon

LOC117437640
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437640
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 610169..613557
location: region:610169-613557:1
so has part: feature:610169-613557:1:exon
subclass of: SO_0000010

117437640
type: Gene
SIO_000068: ncbigene

position:610169:1
position: 610169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:613557:1
position: 613557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:610169-613557:1:exon

LOC117437640
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437640
product: reticulon 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_034072179.1
SIO_010081: LOC117437640
subclass of: SO_0000673
so part of: LOC117437640
location: join(610169..610234,610602..610806,611226..611364,611788..611857,612923..612969,613080..613138,613453..613557)
location: region:610169-613557:1
so has part: feature:610169-610234:1:exon
so has part: feature:610602-610806:1:exon
so has part: feature:611226-611364:1:exon
so has part: feature:611788-611857:1:exon
so has part: feature:612923-612969:1:exon
so has part: feature:613080-613138:1:exon
so has part: feature:613453-613557:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:610169-610234:1:exon

position:610234:1
position: 610234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:610602-610806:1:exon

position:610602:1
position: 610602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:610806:1
position: 610806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:611226-611364:1:exon

position:611226:1
position: 611226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:611364:1
position: 611364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:611788-611857:1:exon

position:611788:1
position: 611788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:611857:1
position: 611857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:612923-612969:1:exon

position:612923:1
position: 612923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:612969:1
position: 612969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:613080-613138:1:exon

position:613080:1
position: 613080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:613138:1
position: 613138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:613453-613557:1:exon

position:613453:1
position: 613453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437640
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: reticulon-2
translation: MERQVWQLLLWKDPARSALVLLSVLAGLGCLSRFSAVSVGAYGALGVLGVTLPRRLHRAALRVLRPPPHPAPREPPEAAVGLSPEEQQRWAQRLARHLSAATRTLTRLFLVHSVPESLKFAFFFYLLTYVGAVCNGLTLLGAGVICAFTFPVLYRHHQAQIDQYVTLVRSHLSHLRARIQAKLPSAKAKPQ
SIO_010081: LOC117437640
subclass of: SO_0000673
so part of: LOC117437640
location: join(610222..610234,610602..610806,611226..611364,611788..611857,612923..612969,613080..613138,613453..613495)
location: region:610222-613495:1
so has part: feature:610222-610234:1:exon
so has part: feature:610602-610806:1:exon
so has part: feature:611226-611364:1:exon
so has part: feature:611788-611857:1:exon
so has part: feature:612923-612969:1:exon
so has part: feature:613080-613138:1:exon
so has part: feature:613453-613495:1:exon

XP_033928070.1
type: Protein
SIO_000068: ncbiprotein

position:610222:1
position: 610222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:613495:1
position: 613495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:610222-610234:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:610602-610806:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:611226-611364:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:611788-611857:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:612923-612969:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:613080-613138:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:613453-613495:1:exon

LOC117437637
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437637
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 616821..623285
location: region:616821-623285:1
so has part: feature:616821-623285:1:exon
subclass of: SO_0000010

117437637
type: Gene
SIO_000068: ncbigene

position:616821:1
position: 616821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:623285:1
position: 623285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:616821-623285:1:exon

LOC117437637
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437637
product: FosB proto-oncogene, AP-1 transcription factor subunit
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 50% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_034072176.1
SIO_010081: LOC117437637
subclass of: SO_0000673
so part of: LOC117437637
location: join(616821..616949,619039..619317,619400..619507,622943..623285)
location: region:616821-623285:1
so has part: feature:616821-616949:1:exon
so has part: feature:619039-619317:1:exon
so has part: feature:619400-619507:1:exon
so has part: feature:622943-623285:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:616821-616949:1:exon

position:616949:1
position: 616949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:619039-619317:1:exon

position:619039:1
position: 619039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:619317:1
position: 619317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:619400-619507:1:exon

position:619400:1
position: 619400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:619507:1
position: 619507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:622943-623285:1:exon

position:622943:1
position: 622943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437637
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437637
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein fosB
translation: MFQGFPGDYDSGSRCSSSPSAEAPFLSSVDSFGSPGTAAAAAQECGALGDMPGSFVPTVTAITTSQDLQWLVQPTLISSVAQSQPPGAPMAHPPPLDPYDLPGPSYSTPGMGGFSAASAPPARPSRVRPRRSREETLTPEEEEKRRVRRERNKLAAAKCRNRRRELTDRLQAETDHLEEEKAELESEIAELRKEKERLELVLAAHAPACKLPFGAAEVSAPRKEEPAAGAQGPFPACCFPAPPNPNPAPFVFTHPEGASCGASHQRSSGSDQSSDSLSSPSLLAL
SIO_010081: LOC117437637
subclass of: SO_0000673
so part of: LOC117437637
location: join(616821..616949,619039..619317,619400..619507,622943..623284)
location: region:616821-623284:1
so has part: feature:616821-616949:1:exon
so has part: feature:619039-619317:1:exon
so has part: feature:619400-619507:1:exon
so has part: feature:622943-623284:1:exon

XP_033928067.1
type: Protein
SIO_000068: ncbiprotein

position:623284:1
position: 623284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:616821-616949:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:619039-619317:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:619400-619507:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:622943-623284:1:exon

LOC117437631
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437631
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(629482..641219)
location: region:629482-641219:-1
so has part: feature:629482-641219:-1:exon
subclass of: SO_0000010

117437631
type: Gene
SIO_000068: ncbigene

position:629482:-1
position: 629482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:641219:-1
position: 641219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:629482-641219:-1:exon

LOC117437631
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437631
product: exocyst complex component 3 like 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_034072168.1
SIO_010081: LOC117437631
subclass of: SO_0000673
so part of: LOC117437631
location: complement(join(629482..629778,630347..630468,630759..630914,632321..632443,633447..633582,633655..633762,633831..633931,635285..635395,636501..636609,637804..638386,639490..639937,641109..641219))
location: region:629482-641219:-1
so has part: feature:641109-641219:-1:exon
so has part: feature:639490-639937:-1:exon
so has part: feature:637804-638386:-1:exon
so has part: feature:636501-636609:-1:exon
so has part: feature:635285-635395:-1:exon
so has part: feature:633831-633931:-1:exon
so has part: feature:633655-633762:-1:exon
so has part: feature:633447-633582:-1:exon
so has part: feature:632321-632443:-1:exon
so has part: feature:630759-630914:-1:exon
so has part: feature:630347-630468:-1:exon
so has part: feature:629482-629778:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:641109-641219:-1:exon

position:641109:-1
position: 641109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:639490-639937:-1:exon

position:639490:-1
position: 639490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:639937:-1
position: 639937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:637804-638386:-1:exon

position:637804:-1
position: 637804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:638386:-1
position: 638386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:636501-636609:-1:exon

position:636501:-1
position: 636501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:636609:-1
position: 636609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:635285-635395:-1:exon

position:635285:-1
position: 635285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:635395:-1
position: 635395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:633831-633931:-1:exon

position:633831:-1
position: 633831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:633931:-1
position: 633931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:633655-633762:-1:exon

position:633655:-1
position: 633655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:633762:-1
position: 633762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:633447-633582:-1:exon

position:633447:-1
position: 633447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:633582:-1
position: 633582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:632321-632443:-1:exon

position:632321:-1
position: 632321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:632443:-1
position: 632443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:630759-630914:-1:exon

position:630759:-1
position: 630759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:630914:-1
position: 630914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:630347-630468:-1:exon

position:630347:-1
position: 630347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:630468:-1
position: 630468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:629482-629778:-1:exon

position:629778:-1
position: 629778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437631
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437631
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: exocyst complex component 3-like protein 2
translation: MPLLRKPPREDEDDPRDPFTASPESRFRRRATLDLLVGLGPFGRSRRGAPPGPGPGPGPGGDARGRRRSEDLGRRRRKEEPGGSKRGSWLRLTVPTPWGQRGAGAERGGTGDGTDGTGAGDGDGAAQGTDGRGKEKEKEKEKEKEPLSVLEILELIQRRELEAADEQILALEAECASPGRHARDLALLHRALQAQLWAALAEAVNAARPLPLLRSVVRVLQREEAADRSPARAPAGLRPRRLRQRWHEAAARAAAERLAQAAAAGGGALGAELEALGARVLRDLSAVRAHVAPAFPAAYEAAAVYARGYHRALAERLGSAARRALGVTELYVLLEWSGGAYGREVLGNPEVGPLLQALGPPLPPETQRSLESSCISAVKAKVEAALAQELQLSEDSWAEEVTNQELQEGLATRVTGLLRAHVDRAPQISAEFGREMAQSLLGVLVTFLHSFQRKVERFLEAPNDSTPTDGTGARAMALVNCCPTFRSFTERLAQFGHPEGEELRRQAQGALDKVTRSCNQVLTQRLFEDLKPYFNKLMKRKWVTSSDAFDSIVMLITSFAQKLCPLHPEPYQVLVSEVHRRVLLAYVRPLLSGRVVCTSAKARARVAARLSDEARQLRELFSRLDSASPWLDSVVPRLRELLVLEDTAALQMEVGVLARDFPDVRREHVAAVLDARGLRSPSARHEILGVLRDVERGGPVAPVEPASPSRHRAFFAELPVPGAGRCLPFQLPRLVPMARLRRRRPRL
SIO_010081: LOC117437631
subclass of: SO_0000673
so part of: LOC117437631
location: complement(join(629529..629778,630347..630468,630759..630914,632321..632443,633447..633582,633655..633762,633831..633931,635285..635395,636501..636609,637804..638386,639490..639934))
location: region:629529-639934:-1
so has part: feature:639490-639934:-1:exon
so has part: feature:637804-638386:-1:exon
so has part: feature:636501-636609:-1:exon
so has part: feature:635285-635395:-1:exon
so has part: feature:633831-633931:-1:exon
so has part: feature:633655-633762:-1:exon
so has part: feature:633447-633582:-1:exon
so has part: feature:632321-632443:-1:exon
so has part: feature:630759-630914:-1:exon
so has part: feature:630347-630468:-1:exon
so has part: feature:629529-629778:-1:exon

XP_033928059.1
type: Protein
SIO_000068: ncbiprotein

position:629529:-1
position: 629529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:639934:-1
position: 639934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:639490-639934:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:637804-638386:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:636501-636609:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:635285-635395:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:633831-633931:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:633655-633762:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:633447-633582:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:632321-632443:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:630759-630914:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:630347-630468:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:629529-629778:-1:exon

LOC117437632
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437632
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 642231..659229
location: region:642231-659229:1
so has part: feature:642231-659229:1:exon
subclass of: SO_0000010

117437632
type: Gene
SIO_000068: ncbigene

position:642231:1
position: 642231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:659229:1
position: 659229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:642231-659229:1:exon

LOC117437632
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437632
product: microtubule affinity regulating kinase 4
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072169.1
SIO_010081: LOC117437632
subclass of: SO_0000673
so part of: LOC117437632
location: join(642231..642481,643831..644019,644108..644161,644262..644310,644387..644452,645699..645769,645842..645898,646869..647105,648679..648798,648874..648973,650305..650414,650526..650679,653239..653454,654479..654576,654862..655153,656264..656343,657470..657514,658623..659229)
location: region:642231-659229:1
so has part: feature:642231-642481:1:exon
so has part: feature:643831-644019:1:exon
so has part: feature:644108-644161:1:exon
so has part: feature:644262-644310:1:exon
so has part: feature:644387-644452:1:exon
so has part: feature:645699-645769:1:exon
so has part: feature:645842-645898:1:exon
so has part: feature:646869-647105:1:exon
so has part: feature:648679-648798:1:exon
so has part: feature:648874-648973:1:exon
so has part: feature:650305-650414:1:exon
so has part: feature:650526-650679:1:exon
so has part: feature:653239-653454:1:exon
so has part: feature:654479-654576:1:exon
so has part: feature:654862-655153:1:exon
so has part: feature:656264-656343:1:exon
so has part: feature:657470-657514:1:exon
so has part: feature:658623-659229:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:642231-642481:1:exon

position:642481:1
position: 642481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:643831-644019:1:exon

position:643831:1
position: 643831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:644019:1
position: 644019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:644108-644161:1:exon

position:644108:1
position: 644108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:644161:1
position: 644161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:644262-644310:1:exon

position:644262:1
position: 644262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:644310:1
position: 644310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:644387-644452:1:exon

position:644387:1
position: 644387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:644452:1
position: 644452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:645699-645769:1:exon

position:645699:1
position: 645699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:645769:1
position: 645769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:645842-645898:1:exon

position:645842:1
position: 645842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:645898:1
position: 645898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:646869-647105:1:exon

position:646869:1
position: 646869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:647105:1
position: 647105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:648679-648798:1:exon

position:648679:1
position: 648679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:648798:1
position: 648798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:648874-648973:1:exon

position:648874:1
position: 648874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:648973:1
position: 648973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:650305-650414:1:exon

position:650305:1
position: 650305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:650414:1
position: 650414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:650526-650679:1:exon

position:650526:1
position: 650526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:650679:1
position: 650679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:653239-653454:1:exon

position:653239:1
position: 653239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:653454:1
position: 653454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:654479-654576:1:exon

position:654479:1
position: 654479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:654576:1
position: 654576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:654862-655153:1:exon

position:654862:1
position: 654862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:655153:1
position: 655153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:656264-656343:1:exon

position:656264:1
position: 656264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:656343:1
position: 656343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:657470-657514:1:exon

position:657470:1
position: 657470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:657514:1
position: 657514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:658623-659229:1:exon

position:658623:1
position: 658623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117437632
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437632
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: MAP/microtubule affinity-regulating kinase 4
translation: MSSRSALAGNERNAEGLGSSRSDKGSGWSSRSLGARCRNSIAVCPEEQPHIGNYRLLRTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKGLNHPNIVKLFEVIETEKTLYLVMEYASAGEVFDYLVSHGRMKEKEARAKFRQIVSAVHYCHQKNIVHRDLKAENLLLDAEANIKIADFGFSNEFRLGSKLDTFCGSPPYAAPELFQGKKYDGPEVDIWSLGVILYTLVSGSLPFDGHNLKELRERVLRGKYRVPFYMSTDCENILRRFLVLNPAKRCTLEQIMKDKWINIGYEGDELKPYKEPEEDFGDTKRIEVMVGMGYTREEIKDSLSTQKYNEVTATYLLLGRKSEVEAGDARTGSTLSLARVRAPNDVANGKSSTGHGKSQRGTGTYHRQRRHSDFCGPSAVPLPPKRSPPGAAEPEERGGGRKGSSGAMGGGGAGVTPHPSSPMVSSAHNPNKAEIPERHKDGAGNAPNVPSSVMGRRNTYVCTERGERGPLLPNGKENSSAPGRGPPPPSPSSQSLAGGVTGGSAGGGGGGGGARLARGSAARSTFHGGHVRERRAPRPRPSPPPAEPAPAPPPAPGRARAPGSLFSKITSKLSRRVTLDPSKRQSSNRCVSGPPAAPGAKIRSQTNLRESGDLRSQVAIYLGIKRKPPPGCPEAPAL
SIO_010081: LOC117437632
subclass of: SO_0000673
so part of: LOC117437632
location: join(642434..642481,643831..644019,644108..644161,644262..644310,644387..644452,645699..645769,645842..645898,646869..647105,648679..648798,648874..648973,650305..650414,650526..650679,653239..653454,654479..654576,654862..655153,656264..656343,657470..657514,658623..658687)
location: region:642434-658687:1
so has part: feature:642434-642481:1:exon
so has part: feature:643831-644019:1:exon
so has part: feature:644108-644161:1:exon
so has part: feature:644262-644310:1:exon
so has part: feature:644387-644452:1:exon
so has part: feature:645699-645769:1:exon
so has part: feature:645842-645898:1:exon
so has part: feature:646869-647105:1:exon
so has part: feature:648679-648798:1:exon
so has part: feature:648874-648973:1:exon
so has part: feature:650305-650414:1:exon
so has part: feature:650526-650679:1:exon
so has part: feature:653239-653454:1:exon
so has part: feature:654479-654576:1:exon
so has part: feature:654862-655153:1:exon
so has part: feature:656264-656343:1:exon
so has part: feature:657470-657514:1:exon
so has part: feature:658623-658687:1:exon

XP_033928060.1
type: Protein
SIO_000068: ncbiprotein

position:642434:1
position: 642434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:658687:1
position: 658687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:642434-642481:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:643831-644019:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:644108-644161:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:644262-644310:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:644387-644452:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:645699-645769:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:645842-645898:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:646869-647105:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:648679-648798:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:648874-648973:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:650305-650414:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:650526-650679:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:653239-653454:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:654479-654576:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:654862-655153:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:656264-656343:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:657470-657514:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:658623-658687:1:exon

LOC117437635
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437635
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(660708..674229)
location: region:660708-674229:-1
so has part: feature:660708-674229:-1:exon
subclass of: SO_0000010

117437635
type: Gene
SIO_000068: ncbigene

position:660708:-1
position: 660708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:674229:-1
position: 674229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:660708-674229:-1:exon

LOC117437635
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437635
product: creatine kinase, M-type
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 31 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_034072173.1
SIO_010081: LOC117437635
subclass of: SO_0000673
so part of: LOC117437635
location: complement(join(660708..660951,662157..662346,663907..664030,666204..666375,667495..667627,668160..668314,670216..670416,674149..674229))
location: region:660708-674229:-1
so has part: feature:674149-674229:-1:exon
so has part: feature:670216-670416:-1:exon
so has part: feature:668160-668314:-1:exon
so has part: feature:667495-667627:-1:exon
so has part: feature:666204-666375:-1:exon
so has part: feature:663907-664030:-1:exon
so has part: feature:662157-662346:-1:exon
so has part: feature:660708-660951:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:674149-674229:-1:exon

position:674149:-1
position: 674149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:670216-670416:-1:exon

position:670216:-1
position: 670216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:670416:-1
position: 670416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:668160-668314:-1:exon

position:668160:-1
position: 668160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:668314:-1
position: 668314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:667495-667627:-1:exon

position:667495:-1
position: 667495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:667627:-1
position: 667627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:666204-666375:-1:exon

position:666204:-1
position: 666204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:666375:-1
position: 666375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:663907-664030:-1:exon

position:663907:-1
position: 663907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:664030:-1
position: 664030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:662157-662346:-1:exon

position:662157:-1
position: 662157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:662346:-1
position: 662346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:660708-660951:-1:exon

position:660951:-1
position: 660951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437635
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: creatine kinase M-type
translation: MPFSNTHNKYKLKFSAEEEFPDLSKHNNHMAKVLTPALYQRLRDKETPSGFTLDDVIQTGVDNPGHPFIMTVGCVAGDEESYEVFKELFDPVIQDRHGGYKPTDKHRTDLNHENLKGGEDLDPKYVLSSRVRTGRSIRGYSLPPHCSRGERRAIEKLSVNALNSLEGEFRGRYYPLRAMTEQEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWVNEEDHLRVISMEKGGNMKEVFRRFCVGLKKIEEIFKAAGHPFMWNEHLGYILTCPSNLGTGLRGGVHVRLPNLSQHPKFEEILTRLRLQKRGTGGVDTAAVGSVFDISNADRLGFSEVEQVQMVVDGVKLMVEMEKKLEQKQSIDSMIPAQK
SIO_010081: LOC117437635
subclass of: SO_0000673
so part of: LOC117437635
location: complement(join(660773..660951,662157..662346,663907..664030,666204..666375,667495..667627,668160..668314,670216..670408))
location: region:660773-670408:-1
so has part: feature:670216-670408:-1:exon
so has part: feature:668160-668314:-1:exon
so has part: feature:667495-667627:-1:exon
so has part: feature:666204-666375:-1:exon
so has part: feature:663907-664030:-1:exon
so has part: feature:662157-662346:-1:exon
so has part: feature:660773-660951:-1:exon

XP_033928064.1
type: Protein
SIO_000068: ncbiprotein

position:660773:-1
position: 660773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:670408:-1
position: 670408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:670216-670408:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:668160-668314:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:667495-667627:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:666204-666375:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:663907-664030:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:662157-662346:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:660773-660951:-1:exon

LOC117437630
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437630
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(675939..692620)
location: region:675939-692620:-1
so has part: feature:675939-692620:-1:exon
subclass of: SO_0000010

117437630
type: Gene
SIO_000068: ncbigene

position:675939:-1
position: 675939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:692620:-1
position: 692620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:675939-692620:-1:exon

LOC117437630
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437630
product: ERCC excision repair 2, TFIIH core complex helicase subunit, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072167.1
SIO_010081: LOC117437630
subclass of: SO_0000673
so part of: LOC117437630
location: complement(join(675939..676147,677803..677946,679248..679391,679469..679539,680283..680355,680779..680871,681149..681270,682061..682124,682213..682314,682949..683018,683150..683219,684074..684192,685386..685557,686122..686237,687744..687840,687924..688047,689335..689451,689532..689642,690317..690430,691676..691753,692337..692436,692576..692620))
location: region:675939-692620:-1
so has part: feature:692576-692620:-1:exon
so has part: feature:692337-692436:-1:exon
so has part: feature:691676-691753:-1:exon
so has part: feature:690317-690430:-1:exon
so has part: feature:689532-689642:-1:exon
so has part: feature:689335-689451:-1:exon
so has part: feature:687924-688047:-1:exon
so has part: feature:687744-687840:-1:exon
so has part: feature:686122-686237:-1:exon
so has part: feature:685386-685557:-1:exon
so has part: feature:684074-684192:-1:exon
so has part: feature:683150-683219:-1:exon
so has part: feature:682949-683018:-1:exon
so has part: feature:682213-682314:-1:exon
so has part: feature:682061-682124:-1:exon
so has part: feature:681149-681270:-1:exon
so has part: feature:680779-680871:-1:exon
so has part: feature:680283-680355:-1:exon
so has part: feature:679469-679539:-1:exon
so has part: feature:679248-679391:-1:exon
so has part: feature:677803-677946:-1:exon
so has part: feature:675939-676147:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:692576-692620:-1:exon

position:692576:-1
position: 692576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:692337-692436:-1:exon

position:692337:-1
position: 692337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:692436:-1
position: 692436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:691676-691753:-1:exon

position:691676:-1
position: 691676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:691753:-1
position: 691753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:690317-690430:-1:exon

position:690317:-1
position: 690317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:690430:-1
position: 690430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:689532-689642:-1:exon

position:689532:-1
position: 689532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:689642:-1
position: 689642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:689335-689451:-1:exon

position:689335:-1
position: 689335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:689451:-1
position: 689451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:687924-688047:-1:exon

position:687924:-1
position: 687924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:688047:-1
position: 688047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:687744-687840:-1:exon

position:687744:-1
position: 687744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:687840:-1
position: 687840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:686122-686237:-1:exon

position:686122:-1
position: 686122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:686237:-1
position: 686237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:685386-685557:-1:exon

position:685386:-1
position: 685386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:685557:-1
position: 685557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:684074-684192:-1:exon

position:684074:-1
position: 684074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:684192:-1
position: 684192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:683150-683219:-1:exon

position:683150:-1
position: 683150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:683219:-1
position: 683219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:682949-683018:-1:exon

position:682949:-1
position: 682949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:683018:-1
position: 683018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:682213-682314:-1:exon

position:682213:-1
position: 682213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:682314:-1
position: 682314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:682061-682124:-1:exon

position:682061:-1
position: 682061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:682124:-1
position: 682124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:681149-681270:-1:exon

position:681149:-1
position: 681149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:681270:-1
position: 681270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:680779-680871:-1:exon

position:680779:-1
position: 680779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:680871:-1
position: 680871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:680283-680355:-1:exon

position:680283:-1
position: 680283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:680355:-1
position: 680355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:679469-679539:-1:exon

position:679469:-1
position: 679469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:679539:-1
position: 679539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:679248-679391:-1:exon

position:679248:-1
position: 679248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:679391:-1
position: 679391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:677803-677946:-1:exon

position:677803:-1
position: 677803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:677946:-1
position: 677946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:675939-676147:-1:exon

position:676147:-1
position: 676147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437630
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437630
product: ERCC excision repair 2, TFIIH core complex helicase subunit, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072165.1
SIO_010081: LOC117437630
subclass of: SO_0000673
so part of: LOC117437630
location: complement(join(675939..676147,677803..677946,679248..679391,679469..679539,680283..680355,680779..680871,681149..681270,682061..682124,682213..682314,682949..683018,683150..683219,684074..684192,685386..685557,686122..686237,687744..687840,687924..688047,689335..689451,689532..689642,690317..690430,691441..691503,691676..691753,692337..692436,692576..692620))
location: region:675939-692620:-1
so has part: feature:692576-692620:-1:exon
so has part: feature:692337-692436:-1:exon
so has part: feature:691676-691753:-1:exon
so has part: feature:691441-691503:-1:exon
so has part: feature:690317-690430:-1:exon
so has part: feature:689532-689642:-1:exon
so has part: feature:689335-689451:-1:exon
so has part: feature:687924-688047:-1:exon
so has part: feature:687744-687840:-1:exon
so has part: feature:686122-686237:-1:exon
so has part: feature:685386-685557:-1:exon
so has part: feature:684074-684192:-1:exon
so has part: feature:683150-683219:-1:exon
so has part: feature:682949-683018:-1:exon
so has part: feature:682213-682314:-1:exon
so has part: feature:682061-682124:-1:exon
so has part: feature:681149-681270:-1:exon
so has part: feature:680779-680871:-1:exon
so has part: feature:680283-680355:-1:exon
so has part: feature:679469-679539:-1:exon
so has part: feature:679248-679391:-1:exon
so has part: feature:677803-677946:-1:exon
so has part: feature:675939-676147:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:692576-692620:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:692337-692436:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:691676-691753:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:691441-691503:-1:exon

position:691441:-1
position: 691441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:691503:-1
position: 691503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:690317-690430:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:689532-689642:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:689335-689451:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:687924-688047:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:687744-687840:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:686122-686237:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:685386-685557:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:684074-684192:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:683150-683219:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:682949-683018:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:682213-682314:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:682061-682124:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:681149-681270:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:680779-680871:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:680283-680355:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:679469-679539:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:679248-679391:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:677803-677946:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:675939-676147:-1:exon

LOC117437630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437630
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: general transcription and DNA repair factor IIH helicase subunit XPD isoform X2
translation: MKLNVDGLLVPFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQRVVEELRKLLECYEKELGQKLPFLGLALSSRKNLCIHPEVSALRYGKDIDSRCMALTAPHARAQSDGSRPHCAFYEDWDTQGRAVPLPHGIYNLDELRALGRRRGWCPYFLARYSILHANVVVYSYHYLLDPKVSDAVSKELARRAVVVFDEAHNIDNVCIDAMGVTITRRTLDRCQSNLVALQDAVQRLQQVDEARLAQEYGRLVQGLRDPELSQGGPLLPEDVPTEALPGSIRSARHFLSFLRRLVAFVRAQLRGGGPVRQESPAAFLRELRLRACVEARPLRFCSERLRSLLRTLEVQDVSEFSPIALVANLGTLVSTYGRGFTIIIEPFDDRTPSISNPVLHFCCLDASIAIKPIFERFQSVIITSGTLSPLDMYPKILDFRPVTMATFSMTLARTCLCPMIVGRGNDQVAITSKFETREDIAVIRNLGSLLLELSAVVPDGIVAFFTSYQYLESTVAAWYEQGILENIQRNKLIFIETQDGAETSMALEKYQEACECGRGAVLLSVARGKVSEGVDFVHHYGRAVIMFGVPYVYTQSRILKARLEFLRDRFQLRENEFLAFDAMRHAAQCVGRALRGKSDYGIMVFADKRYARPDRRGKLPRWIQEQIPDSSLNLTVDEAVQVAKGFLRAMAQPFRQEDQLGLSLLTMEQLQCQEVLQRLEQGVQQL
SIO_010081: LOC117437630
subclass of: SO_0000673
so part of: LOC117437630
location: complement(join(676055..676147,677803..677946,679248..679391,679469..679539,680283..680355,680779..680871,681149..681270,682061..682124,682213..682314,682949..683018,683150..683219,684074..684192,685386..685557,686122..686237,687744..687840,687924..688047,689335..689451,689532..689642,690317..690430,691676..691753,692337..692436,692576..692580))
location: region:676055-692580:-1
so has part: feature:692576-692580:-1:exon
so has part: feature:692337-692436:-1:exon
so has part: feature:691676-691753:-1:exon
so has part: feature:690317-690430:-1:exon
so has part: feature:689532-689642:-1:exon
so has part: feature:689335-689451:-1:exon
so has part: feature:687924-688047:-1:exon
so has part: feature:687744-687840:-1:exon
so has part: feature:686122-686237:-1:exon
so has part: feature:685386-685557:-1:exon
so has part: feature:684074-684192:-1:exon
so has part: feature:683150-683219:-1:exon
so has part: feature:682949-683018:-1:exon
so has part: feature:682213-682314:-1:exon
so has part: feature:682061-682124:-1:exon
so has part: feature:681149-681270:-1:exon
so has part: feature:680779-680871:-1:exon
so has part: feature:680283-680355:-1:exon
so has part: feature:679469-679539:-1:exon
so has part: feature:679248-679391:-1:exon
so has part: feature:677803-677946:-1:exon
so has part: feature:676055-676147:-1:exon

XP_033928058.1
type: Protein
SIO_000068: ncbiprotein

position:676055:-1
position: 676055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:692580:-1
position: 692580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:692576-692580:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:692337-692436:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:691676-691753:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:690317-690430:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:689532-689642:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:689335-689451:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:687924-688047:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:687744-687840:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:686122-686237:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:685386-685557:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:684074-684192:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:683150-683219:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:682949-683018:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:682213-682314:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:682061-682124:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:681149-681270:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:680779-680871:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:680283-680355:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:679469-679539:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:679248-679391:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:677803-677946:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:676055-676147:-1:exon

LOC117437630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437630
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
translation: MKLNVDGLLVPFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQRAHPSEVTKLIYCSRTVPEIEKVVEELRKLLECYEKELGQKLPFLGLALSSRKNLCIHPEVSALRYGKDIDSRCMALTAPHARAQSDGSRPHCAFYEDWDTQGRAVPLPHGIYNLDELRALGRRRGWCPYFLARYSILHANVVVYSYHYLLDPKVSDAVSKELARRAVVVFDEAHNIDNVCIDAMGVTITRRTLDRCQSNLVALQDAVQRLQQVDEARLAQEYGRLVQGLRDPELSQGGPLLPEDVPTEALPGSIRSARHFLSFLRRLVAFVRAQLRGGGPVRQESPAAFLRELRLRACVEARPLRFCSERLRSLLRTLEVQDVSEFSPIALVANLGTLVSTYGRGFTIIIEPFDDRTPSISNPVLHFCCLDASIAIKPIFERFQSVIITSGTLSPLDMYPKILDFRPVTMATFSMTLARTCLCPMIVGRGNDQVAITSKFETREDIAVIRNLGSLLLELSAVVPDGIVAFFTSYQYLESTVAAWYEQGILENIQRNKLIFIETQDGAETSMALEKYQEACECGRGAVLLSVARGKVSEGVDFVHHYGRAVIMFGVPYVYTQSRILKARLEFLRDRFQLRENEFLAFDAMRHAAQCVGRALRGKSDYGIMVFADKRYARPDRRGKLPRWIQEQIPDSSLNLTVDEAVQVAKGFLRAMAQPFRQEDQLGLSLLTMEQLQCQEVLQRLEQGVQQL
SIO_010081: LOC117437630
subclass of: SO_0000673
so part of: LOC117437630
location: complement(join(676055..676147,677803..677946,679248..679391,679469..679539,680283..680355,680779..680871,681149..681270,682061..682124,682213..682314,682949..683018,683150..683219,684074..684192,685386..685557,686122..686237,687744..687840,687924..688047,689335..689451,689532..689642,690317..690430,691441..691503,691676..691753,692337..692436,692576..692580))
location: region:676055-692580:-1
so has part: feature:692576-692580:-1:exon
so has part: feature:692337-692436:-1:exon
so has part: feature:691676-691753:-1:exon
so has part: feature:691441-691503:-1:exon
so has part: feature:690317-690430:-1:exon
so has part: feature:689532-689642:-1:exon
so has part: feature:689335-689451:-1:exon
so has part: feature:687924-688047:-1:exon
so has part: feature:687744-687840:-1:exon
so has part: feature:686122-686237:-1:exon
so has part: feature:685386-685557:-1:exon
so has part: feature:684074-684192:-1:exon
so has part: feature:683150-683219:-1:exon
so has part: feature:682949-683018:-1:exon
so has part: feature:682213-682314:-1:exon
so has part: feature:682061-682124:-1:exon
so has part: feature:681149-681270:-1:exon
so has part: feature:680779-680871:-1:exon
so has part: feature:680283-680355:-1:exon
so has part: feature:679469-679539:-1:exon
so has part: feature:679248-679391:-1:exon
so has part: feature:677803-677946:-1:exon
so has part: feature:676055-676147:-1:exon

XP_033928056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:692576-692580:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:692337-692436:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:691676-691753:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:691441-691503:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:690317-690430:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:689532-689642:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:689335-689451:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:687924-688047:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:687744-687840:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:686122-686237:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:685386-685557:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:684074-684192:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:683150-683219:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:682949-683018:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:682213-682314:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:682061-682124:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:681149-681270:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:680779-680871:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:680283-680355:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:679469-679539:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:679248-679391:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:677803-677946:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:676055-676147:-1:exon

LOC117437630
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 13146
gene: LOC117437630
product: ERCC excision repair 2, TFIIH core complex helicase subunit, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004550480.1
SIO_010081: LOC117437630
so part of: LOC117437630
location: complement(join(681197..681270,682061..682124,682213..682314,682949..683018,684074..684192,685386..685557,686122..686237,687744..687840,687924..688047,689335..689451,689532..689642,690317..690430,691441..691503,691676..691753,692337..692436,692576..692620))
location: region:681197-692620:-1
so has part: feature:692576-692620:-1:exon
so has part: feature:692337-692436:-1:exon
so has part: feature:691676-691753:-1:exon
so has part: feature:691441-691503:-1:exon
so has part: feature:690317-690430:-1:exon
so has part: feature:689532-689642:-1:exon
so has part: feature:689335-689451:-1:exon
so has part: feature:687924-688047:-1:exon
so has part: feature:687744-687840:-1:exon
so has part: feature:686122-686237:-1:exon
so has part: feature:685386-685557:-1:exon
so has part: feature:684074-684192:-1:exon
so has part: feature:682949-683018:-1:exon
so has part: feature:682213-682314:-1:exon
so has part: feature:682061-682124:-1:exon
so has part: feature:681197-681270:-1:exon

position:681197:-1
position: 681197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:692576-692620:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:692337-692436:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:691676-691753:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:691441-691503:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:690317-690430:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:689532-689642:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:689335-689451:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:687924-688047:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:687744-687840:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:686122-686237:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:685386-685557:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:684074-684192:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:682949-683018:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:682213-682314:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:682061-682124:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:681197-681270:-1:exon

LOC117437639
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437639
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(693675..696784)
location: region:693675-696784:-1
so has part: feature:693675-696784:-1:exon
subclass of: SO_0000010

117437639
type: Gene
SIO_000068: ncbigene

position:693675:-1
position: 693675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:696784:-1
position: 696784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:693675-696784:-1:exon

LOC117437639
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437639
product: delta-like protein B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_034072178.1
SIO_010081: LOC117437639
subclass of: SO_0000673
so part of: LOC117437639
location: complement(join(693675..693730,693803..693884,696270..696784))
location: region:693675-696784:-1
so has part: feature:696270-696784:-1:exon
so has part: feature:693803-693884:-1:exon
so has part: feature:693675-693730:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:696270-696784:-1:exon

position:696270:-1
position: 696270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:693803-693884:-1:exon

position:693803:-1
position: 693803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:693884:-1
position: 693884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:693675-693730:-1:exon

position:693730:-1
position: 693730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437639
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437639
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: delta-like protein B
translation: MCYMYVTCMLHVCYMYVTGGQCRSVPGAPPLCRCRPGFIGRRCDRNLDECSPNPCANGGTCQDGVNAFHCACTLGYAGRRCQRRADACASGPCLHGATCYTHISGHVCACAAGYMGALCEEAVPARATPPPRGHAPLVLGCAVPAALLLLMVIVGSALGAAGRRPRPPPPGGAPVLSAPGREQRIGPSATRV
SIO_010081: LOC117437639
subclass of: SO_0000673
so part of: LOC117437639
location: complement(join(693725..693730,693803..693884,696270..696760))
location: region:693725-696760:-1
so has part: feature:696270-696760:-1:exon
so has part: feature:693803-693884:-1:exon
so has part: feature:693725-693730:-1:exon

XP_033928069.1
type: Protein
SIO_000068: ncbiprotein

position:693725:-1
position: 693725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:696760:-1
position: 696760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:696270-696760:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:693803-693884:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:693725-693730:-1:exon

LOC117437643
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437643
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(700681..701698)
location: region:700681-701698:-1
so has part: feature:700681-701698:-1:exon
subclass of: SO_0000011

117437643
type: Gene
SIO_000068: ncbigene

position:700681:-1
position: 700681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:701698:-1
position: 701698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:700681-701698:-1:exon

LOC117437643
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13146
nc RNA class: lncRNA
gene: LOC117437643
product: uncharacterized LOC117437643
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004550481.1
SIO_010081: LOC117437643
subclass of: SO_0000673
so part of: LOC117437643
location: complement(join(700681..700838,701086..701151,701667..701698))
location: region:700681-701698:-1
so has part: feature:701667-701698:-1:exon
so has part: feature:701086-701151:-1:exon
so has part: feature:700681-700838:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:701667-701698:-1:exon

position:701667:-1
position: 701667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:701086-701151:-1:exon

position:701086:-1
position: 701086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:701151:-1
position: 701151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:700681-700838:-1:exon

position:700838:-1
position: 700838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437644
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437644
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(701792..703229)
location: region:701792-703229:-1
so has part: feature:701792-703229:-1:exon
subclass of: SO_0000011

117437644
type: Gene
SIO_000068: ncbigene

position:701792:-1
position: 701792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:703229:-1
position: 703229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:701792-703229:-1:exon

LOC117437644
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 13146
nc RNA class: lncRNA
gene: LOC117437644
product: uncharacterized LOC117437644
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004550482.1
SIO_010081: LOC117437644
subclass of: SO_0000673
so part of: LOC117437644
location: complement(join(701792..701846,702459..702516,703174..703229))
location: region:701792-703229:-1
so has part: feature:703174-703229:-1:exon
so has part: feature:702459-702516:-1:exon
so has part: feature:701792-701846:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:703174-703229:-1:exon

position:703174:-1
position: 703174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:702459-702516:-1:exon

position:702459:-1
position: 702459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:702516:-1
position: 702516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:701792-701846:-1:exon

position:701846:-1
position: 701846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437642
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC117437642
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(704399..707284)
location: region:704399-707284:-1
so has part: feature:704399-707284:-1:exon
subclass of: SO_0000010

117437642
type: Gene
SIO_000068: ncbigene

position:704399:-1
position: 704399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:707284:-1
position: 707284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:704399-707284:-1:exon

LOC117437642
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC117437642
product: translocase of inner mitochondrial membrane 50
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072181.1
SIO_010081: LOC117437642
subclass of: SO_0000673
so part of: LOC117437642
location: complement(join(704399..704554,706003..706109,707184..707284))
location: region:704399-707284:-1
so has part: feature:707184-707284:-1:exon
so has part: feature:706003-706109:-1:exon
so has part: feature:704399-704554:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:707184-707284:-1:exon

position:707184:-1
position: 707184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:706003-706109:-1:exon

position:706003:-1
position: 706003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:706109:-1
position: 706109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:704399-704554:-1:exon

position:704554:-1
position: 704554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117437642
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC117437642
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mitochondrial import inner membrane translocase subunit TIM50
translation: MVPRWDGGSGDRQLYELAAFLKTIALSGVPDVRPVLEHYALEEDPLAAFRRRRTQLEEEEQQRRQELAQGKKPPPGLSLGSWAGRLWGRSRQQ
SIO_010081: LOC117437642
subclass of: SO_0000673
so part of: LOC117437642
location: complement(join(704447..704554,706003..706109,707184..707250))
location: region:704447-707250:-1
so has part: feature:707184-707250:-1:exon
so has part: feature:706003-706109:-1:exon
so has part: feature:704447-704554:-1:exon

XP_033928072.1
type: Protein
SIO_000068: ncbiprotein

position:704447:-1
position: 704447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:707250:-1
position: 707250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:707184-707250:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:706003-706109:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:704447-704554:-1:exon

LOC115946224
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC115946224
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(721588..734494)
location: region:721588-734494:-1
so has part: feature:721588-734494:-1:exon
subclass of: SO_0000010

115946224
type: Gene
SIO_000068: ncbigene

position:721588:-1
position: 721588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:734494:-1
position: 734494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:721588-734494:-1:exon

LOC115946224
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC115946224
product: zinc finger CCCH-type containing 4
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072164.1
SIO_010081: LOC115946224
subclass of: SO_0000673
so part of: LOC115946224
location: complement(join(721588..723513,724108..724356,724450..724817,725423..725771,725861..725970,726218..726329,726410..726517,726740..726885,727194..727281,727362..727504,727924..728146,728262..728372,728854..729073,734319..734494))
location: region:721588-734494:-1
so has part: feature:734319-734494:-1:exon
so has part: feature:728854-729073:-1:exon
so has part: feature:728262-728372:-1:exon
so has part: feature:727924-728146:-1:exon
so has part: feature:727362-727504:-1:exon
so has part: feature:727194-727281:-1:exon
so has part: feature:726740-726885:-1:exon
so has part: feature:726410-726517:-1:exon
so has part: feature:726218-726329:-1:exon
so has part: feature:725861-725970:-1:exon
so has part: feature:725423-725771:-1:exon
so has part: feature:724450-724817:-1:exon
so has part: feature:724108-724356:-1:exon
so has part: feature:721588-723513:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:734319-734494:-1:exon

position:734319:-1
position: 734319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:728854-729073:-1:exon

position:728854:-1
position: 728854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:729073:-1
position: 729073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:728262-728372:-1:exon

position:728262:-1
position: 728262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:728372:-1
position: 728372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:727924-728146:-1:exon

position:727924:-1
position: 727924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:728146:-1
position: 728146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:727362-727504:-1:exon

position:727362:-1
position: 727362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:727504:-1
position: 727504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:727194-727281:-1:exon

position:727194:-1
position: 727194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:727281:-1
position: 727281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:726740-726885:-1:exon

position:726740:-1
position: 726740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:726885:-1
position: 726885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:726410-726517:-1:exon

position:726410:-1
position: 726410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:726517:-1
position: 726517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:726218-726329:-1:exon

position:726218:-1
position: 726218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:726329:-1
position: 726329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:725861-725970:-1:exon

position:725861:-1
position: 725861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:725970:-1
position: 725970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:725423-725771:-1:exon

position:725423:-1
position: 725423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:725771:-1
position: 725771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:724450-724817:-1:exon

position:724450:-1
position: 724450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:724817:-1
position: 724817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:724108-724356:-1:exon

position:724108:-1
position: 724108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:724356:-1
position: 724356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:721588-723513:-1:exon

position:723513:-1
position: 723513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115946224
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 13146
gene: LOC115946224
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 4
translation: MAVESPSVPPSAAASPPSPHSNPPSPSCHHHDSGSSCLPRPPPPLQHHHGPDEREDGELEEGELEDDGGEEGQDPTESQDRGRKEKGEKHHSDSEEEKSHRRMKRKRRKEREKEKRRSKKKRKSKHKRHASSSEDFSDYSEDSDFSPGEKGHRKYREYSPPYGSSHQQYPSSHSASMPKKSYSKLESKSYGMYEDYENEEYAHYEGEEDEDLGKEDYDDFVKELNQYRRVKEGSHRGRGGRGRGRGYRGRGGRGGMRGRGLGRGSRGRGRGEHPDEEEEMYEEEMEYCDPEEPMDEDDYMKELNQYRRSKESRGRGLNRGRGRGPRGRGNKGMGRGRGRGGNRSGMGKGGGMNEEDDYYDEDMGDGGGNYRRNDHDKPHQQADKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGYCARAENCPYMHGDFPCKLFHTTGNCINGDDCMFSHEPLTEETRELLDKMLADDAEAGAEDEKEVEELKKQGINPLPKPPPGVGLLPTPPRPPGPPAPTSPNGRPMPGGPPPPPPPPLPPPXGPQMPPPMHEPLSPQQQDMYKKIPSLFEIVVRPTGQLAEKLGVRHPGPPPPRFPGPGGPPGPMGPGPMHPDMHPDMHPDMHPDMHPDMHPDMHPDMHPDMHPDMPMGPGMNPGPPMGPGPPMMPYGPDDSPHSGMMPPGPPGQGFYDNFYQQQEGLEMDHGMMGDPDDYGGYEELEGPPGEHMFPDPSLDPDALCEGGPPGLAKPPGSIPDFLPSAQRALYLRIQQKQQEEEERARRLESSKQERENEEGDPGNWYSSDEDEGGSSVTSILKSLRQQSSGNAARPHKAQAGSSSRPADPRLRDPRLSRNADPCGEPGPSDPRLARHIPSAIPKAEPHSSGQKPPLLPDDEEGERALRDKPISIPLDALPGHSLRDPRSQLQQFSHIKKDVVLNKPNFARMILWSPEDLIPLPIPKQEFIPIPAALQSMPGLDPRLNRSQASLSDPRQRAGNAPGDANSSASGSSGSSGSGLPDFELLSRILKTVSAGGSPQSDKPSDPRVRKAPSDPRLHKSMDPAASRASKPPDPAPGGEAIAPYDPRLLTGSGQSSVLSAISLYDPRTPNSGGKASEPLPEGSSKALECGKAAAKAKEPLFVRRSALEQPEAEKGSEAATDRYNSYNRPRPKATGSIPGNAGDPAAPQPGVHNLPVPPVYGMVKQSSKSGAGSPFAGNSPAQDSEQQDAASLKDVFKGFDPTASPFCQ
SIO_010081: LOC115946224
subclass of: SO_0000673
so part of: LOC115946224
location: complement(join(722159..723513,724108..724356,724450..724817,725423..725771,725861..725970,726218..726329,726410..726517,726740..726885,727194..727281,727362..727504,727924..728146,728262..728372,728854..729073,734319..734479))
location: region:722159-734479:-1
so has part: feature:734319-734479:-1:exon
so has part: feature:728854-729073:-1:exon
so has part: feature:728262-728372:-1:exon
so has part: feature:727924-728146:-1:exon
so has part: feature:727362-727504:-1:exon
so has part: feature:727194-727281:-1:exon
so has part: feature:726740-726885:-1:exon
so has part: feature:726410-726517:-1:exon
so has part: feature:726218-726329:-1:exon
so has part: feature:725861-725970:-1:exon
so has part: feature:725423-725771:-1:exon
so has part: feature:724450-724817:-1:exon
so has part: feature:724108-724356:-1:exon
so has part: feature:722159-723513:-1:exon

XP_033928055.1
type: Protein
SIO_000068: ncbiprotein

position:722159:-1
position: 722159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:734479:-1
position: 734479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:734319-734479:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:728854-729073:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:728262-728372:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:727924-728146:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:727362-727504:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:727194-727281:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:726740-726885:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:726410-726517:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:726218-726329:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:725861-725970:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:725423-725771:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:724450-724817:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:724108-724356:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:722159-723513:-1:exon

LOC101881891
type: Gene
subclass of: SO_0000704
RO_0002162: 13146
gene: LOC101881891
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 735502..742836
location: region:735502-742836:1
so has part: feature:735502-742836:1:exon
subclass of: SO_0000010

101881891
type: Gene
SIO_000068: ncbigene

position:735502:1
position: 735502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:742836:1
position: 742836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:735502-742836:1:exon

LOC101881891
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 13146
gene: LOC101881891
product: SUMO1 activating enzyme subunit 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_034072175.1
SIO_010081: LOC101881891
subclass of: SO_0000673
so part of: LOC101881891
location: join(735502..735887,736992..737103,737603..737776,738088..738230,738923..739025,740143..740248,741625..741769,742490..742559,742678..742836)
location: region:735502-742836:1
so has part: feature:735502-735887:1:exon
so has part: feature:736992-737103:1:exon
so has part: feature:737603-737776:1:exon
so has part: feature:738088-738230:1:exon
so has part: feature:738923-739025:1:exon
so has part: feature:740143-740248:1:exon
so has part: feature:741625-741769:1:exon
so has part: feature:742490-742559:1:exon
so has part: feature:742678-742836:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:735502-735887:1:exon

position:735887:1
position: 735887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:736992-737103:1:exon

position:736992:1
position: 736992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:737103:1
position: 737103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:737603-737776:1:exon

position:737603:1
position: 737603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:737776:1
position: 737776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:738088-738230:1:exon

position:738088:1
position: 738088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:738230:1
position: 738230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:738923-739025:1:exon

position:738923:1
position: 738923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:739025:1
position: 739025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition