Streptococcus pneumoniae strain Hu17 plasmid pSpn_Hu17.
type: Entry
definition: Streptococcus pneumoniae strain Hu17 plasmid pSpn_Hu17.
sequence version: NZ_CP020550.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP020550.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN06622699
keyword: RefSeq
source: Streptococcus pneumoniae
organism: Streptococcus pneumoniae
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP020550.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 157x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 04:45:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,172\nCDSs (total) :: 2,143\nGenes (coding) :: 2,027\nCDSs (with protein) :: 2,027\nGenes (RNA) :: 29\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 23\nncRNAs :: 3\nPseudo Genes (total) :: 116\nCDSs (without protein) :: 116\nPseudo Genes (ambiguous residues) :: 0 of 116\nPseudo Genes (frameshifted) :: 53 of 116\nPseudo Genes (incomplete) :: 60 of 116\nPseudo Genes (internal stop) :: 30 of 116\nPseudo Genes (multiple problems) :: 24 of 116\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 6012
topology: circular
so has quality: SO_0000988
location: 1..6012
location: region:1-6012:1
RO_0002162: 1313

NZ_CP020550
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN06622699
type: BioSample
SIO_000068: biosample

1
title: Draft genome sequences of two Streptococcus pneumoniae serotype 19A sequence type 226 clinical isolates from Hungary with high-level beta-lactam resistance and penicillin sensitive phenotype
author: Rieger, M.
author: Hakenbeck, R.
journal: Unpublished

2
title: Direct Submission
author: Rieger, M.
journal: Submitted (22-MAR-2017) Microbiology, University of Kaiserslautern, Paul-Ehrlich-Strasse 23, Kaiserslautern 67663, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6012:1
position: 6012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6012:1:source
so part of: sequence
organism: Streptococcus pneumoniae
mol type: genomic DNA
strain: Hu17
host: Homo sapiens
plasmid: pSpn_Hu17
country: Hungary
collection date: 1991

1313
type: Taxonomy
SIO_000068: taxonomy

SPNHU17_RS10770
type: Gene
subclass of: SO_0000704
RO_0002162: 1313
locus tag: SPNHU17_RS10770
old locus tag: SPNHU17_p00001
so part of: sequence
location: 86..793
location: region:86-793:1
so has part: feature:86-793:1:exon
subclass of: SO_0000010

66807314
type: Gene
SIO_000068: ncbigene

position:86:1
position: 86
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:793:1
position: 793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86-793:1:exon

SPNHU17_RS10770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1313
locus tag: SPNHU17_RS10770
old locus tag: SPNHU17_p00001
inference: COORDINATES: protein motif:HMM:NF017518.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zonular occludens toxin domain-containing protein
translation: MRKKGIRGKQFEVLSEKPAYLKIFSFIGALSYDLYHRIKNGKEFREYGLTLYCGRQGGGKTMAMTEYLERMRKKYPEAIICTNFGYVHEDVPMNSWQQLFELRNGLKGVIFAIDEIQNEYNSSAWQKFPEGLLAEITQQRKQRIKIVGTSQVFTRVVKQLREQTFEVVECRTIAGRWTFTRAFDAEDYNAVCERPEAKMKLRRLWRRSFVQSKELREKYDTYAKIQKMAEAVNKG
SIO_010081: SPNHU17_RS10770
subclass of: SO_0000673
so part of: SPNHU17_RS10770
location: 86..793
location: region:86-793:1
so has part: feature:86-793:1:exon

WP_050144805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:86-793:1:exon

SPNHU17_RS10775
type: Gene
subclass of: SO_0000704
RO_0002162: 1313
locus tag: SPNHU17_RS10775
old locus tag: SPNHU17_p00002
so part of: sequence
location: 1058..>1486
location: region:1058-1486:1
so has part: feature:1058-1486:1:exon
subclass of: SO_0000010

66807315
type: Gene
SIO_000068: ncbigene

position:1058:1
position: 1058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1486:1
position: 1486
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1058-1486:1:exon

SPNHU17_RS10775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1313
locus tag: SPNHU17_RS10775
old locus tag: SPNHU17_p00002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000660642.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein rep
translation: MKEKQNQGLQTLKDVSKTGKDRKWRERKLKNIELASQLDILGYRSFERVYQCAEVLKFVEQSDGTKKLYQSYFCKNKLCALCNWRRSMKYSYQASKIVEEAMIRQPKGRFLFLTLTVKNVTGQELNQSMTDILRGFNRLMKYK
SIO_010081: SPNHU17_RS10775
subclass of: SO_0000673
so part of: SPNHU17_RS10775
location: 1058..>1486
location: region:1058-1486:1
so has part: feature:1058-1486:1:exon

WP_208912258.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1058-1486:1:exon

SPNHU17_RS10780
type: Gene
subclass of: SO_0000704
RO_0002162: 1313
locus tag: SPNHU17_RS10780
old locus tag: SPNHU17_p00003
so part of: sequence
location: <1587..1911
location: region:1587-1911:1
so has part: feature:1587-1911:1:exon
subclass of: SO_0000010

66807316
type: Gene
SIO_000068: ncbigene

position:1587:1
position: 1587
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:1911:1
position: 1911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1587-1911:1:exon

SPNHU17_RS10780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1313
locus tag: SPNHU17_RS10780
old locus tag: SPNHU17_p00003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000660642.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 2
transl table: 11
product: protein rep
translation: KADKGKGLKGAILETAKYPVKPFDVTDEKTDFTDQEKLQIVDDMLTGLHRKRQIGFGKLFKEIKKDLDFDDLEDGNLVQTGEDKDGTSSGREIVAIWNWERKNYYLK
SIO_010081: SPNHU17_RS10780
subclass of: SO_0000673
so part of: SPNHU17_RS10780
location: <1587..1911
location: region:1587-1911:1
so has part: feature:1587-1911:1:exon

WP_231293596.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1587-1911:1:exon

SPNHU17_RS10785
type: Gene
subclass of: SO_0000704
RO_0002162: 1313
locus tag: SPNHU17_RS10785
old locus tag: SPNHU17_p00004
so part of: sequence
location: 2461..2619
location: region:2461-2619:1
so has part: feature:2461-2619:1:exon
subclass of: SO_0000010

66807317
type: Gene
SIO_000068: ncbigene

position:2461:1
position: 2461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2619:1
position: 2619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2461-2619:1:exon

SPNHU17_RS10785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1313
locus tag: SPNHU17_RS10785
old locus tag: SPNHU17_p00004
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPVKYSLTSAQYALIARNPLPAKAEMFMTVNIATKKVAFDRFENVEAVDVAA
SIO_010081: SPNHU17_RS10785
subclass of: SO_0000673
so part of: SPNHU17_RS10785
location: 2461..2619
location: region:2461-2619:1
so has part: feature:2461-2619:1:exon

WP_208912261.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2461-2619:1:exon

SPNHU17_RS10790
type: Gene
subclass of: SO_0000704
RO_0002162: 1313
locus tag: SPNHU17_RS10790
old locus tag: SPNHU17_p00005
so part of: sequence
location: 2619..3053
location: region:2619-3053:1
so has part: feature:2619-3053:1:exon
subclass of: SO_0000010

66807318
type: Gene
SIO_000068: ncbigene

position:3053:1
position: 3053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2619-3053:1:exon

SPNHU17_RS10790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1313
locus tag: SPNHU17_RS10790
old locus tag: SPNHU17_p00005
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKPEDNSNLSSVFESYNKSLLEKLNEQTKATNKVYDELKKFNERIDKDKQEQEQLEKKKQDENQEKKQDSDEILEELKNLSKLTEENGKQTETDEKIAKIVTKVEKDYDLYHMQANVITFYGVIVIPGLLLFFFINHLLKQFVF
SIO_010081: SPNHU17_RS10790
subclass of: SO_0000673
so part of: SPNHU17_RS10790
location: 2619..3053
location: region:2619-3053:1
so has part: feature:2619-3053:1:exon

WP_000801501.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2619-3053:1:exon

SPNHU17_RS10800
type: Gene
subclass of: SO_0000704
RO_0002162: 1313
locus tag: SPNHU17_RS10800
old locus tag: SPNHU17_p00008
so part of: sequence
location: 3729..>4222
location: region:3729-4222:1
so has part: feature:3729-4222:1:exon
subclass of: SO_0000010

66807320
type: Gene
SIO_000068: ncbigene

position:3729:1
position: 3729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4222:1
position: 4222
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3729-4222:1:exon

SPNHU17_RS10800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1313
locus tag: SPNHU17_RS10800
old locus tag: SPNHU17_p00008
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKIIKKIAVCFCIVVLIFTTSRPRTVKAEALTLGGGLTYLAGAGASAASLPILIIGLAAVLLLGLVVTNWDDIAAFGNAVADELRLAGYALSSFVNGTSVKIDNTFKSAVLKAYSKTGTTMTKYYPTTDYSGGTFVKTGLLNTKDRLDASVYLEYLDHDFPYS
SIO_010081: SPNHU17_RS10800
subclass of: SO_0000673
so part of: SPNHU17_RS10800
location: 3729..>4222
location: region:3729-4222:1
so has part: feature:3729-4222:1:exon

WP_208912254.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3729-4222:1:exon

SPNHU17_RS10805
type: Gene
subclass of: SO_0000704
RO_0002162: 1313
locus tag: SPNHU17_RS10805
old locus tag: SPNHU17_p00009
so part of: sequence
location: <4496..>5619
location: region:4496-5619:1
so has part: feature:4496-5619:1:exon
subclass of: SO_0000010

66807321
type: Gene
SIO_000068: ncbigene

position:4496:1
position: 4496
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:5619:1
position: 5619
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4496-5619:1:exon

SPNHU17_RS10805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1313
locus tag: SPNHU17_RS10805
old locus tag: SPNHU17_p00009
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 2
transl table: 11
product: hypothetical protein
translation: NVVNNIYGKSNIFLSTAPPSSWKSLNSSYTGVNQYVLSSITVIASFEPTTAKVAFFNLINLGTQKEVRDANGNLTKLILTITAQEVADFTSGGEHVTEFATALATDKPVTITDVSIPELGIGSVREEISTANMMQNAMTVKTAEQYINVAFPEASTTVTFNSQAAAIGATLPQIGTLSDYALTGAQTDELARVRAGTATGSLTGAQTATGTLVGAGTGWLDKILDFLKKLLNAILSIPGAILDGLKALWDWLAKILQAILAIPGGIIGILSKIWEFLQTLSKVIADAITGAITWTFSIDETWLRGRLSSLNDTFRRKFPVMVPLRYDFNDKDTISDMSVNILGSNYVILNGATATKLASPIKMVFRALAYVLMA
SIO_010081: SPNHU17_RS10805
subclass of: SO_0000673
so part of: SPNHU17_RS10805
location: <4496..>5619
location: region:4496-5619:1
so has part: feature:4496-5619:1:exon

WP_208912256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4496-5619:1:exon

SPNHU17_RS11115
type: Gene
subclass of: SO_0000704
RO_0002162: 1313
locus tag: SPNHU17_RS11115
old locus tag: SPNHU17_p00010
so part of: sequence
location: <5719..6012
location: region:5719-6012:1
so has part: feature:5719-6012:1:exon
subclass of: SO_0000010

68955843
type: Gene
SIO_000068: ncbigene

position:5719:1
position: 5719
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5719-6012:1:exon

SPNHU17_RS11115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1313
locus tag: SPNHU17_RS11115
old locus tag: SPNHU17_p00010
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: YSLLGSSIKWRRIKMVQGILSVCFKILEWLIGLFPSFEFVNNFVSALNAVSNILYEASPFVPFRDIFICIGLISTFYVSLFGTKCINWLIHRIPFIN
SIO_010081: SPNHU17_RS11115
subclass of: SO_0000673
so part of: SPNHU17_RS11115
location: <5719..6012
location: region:5719-6012:1
so has part: feature:5719-6012:1:exon

WP_231293595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5719-6012:1:exon