Streptococcus mutans strain NCH105 plasmid pMut2, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.
Complete genome of Streptococcus mutans NCH105, a fluoride resistant strain
Submitted (20-SEP-2019) Genetics and Genome Sciences, UConn Health, 400 Farmington Ave., Farmington, CT 06032, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP044220.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 10-SEP-2019\nAssembly Method :: SPAdes v. 3.9.0\nAssembly Name :: UCHC_Smut_1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 175.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 02:57:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,002\nCDSs (total) :: 1,918\nGenes (coding) :: 1,870\nCDSs (with protein) :: 1,870\nGenes (RNA) :: 84\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 65\nncRNAs :: 4\nPseudo Genes (total) :: 48\nCDSs (without protein) :: 48\nPseudo Genes (ambiguous residues) :: 0 of 48\nPseudo Genes (frameshifted) :: 26 of 48\nPseudo Genes (incomplete) :: 29 of 48\nPseudo Genes (internal stop) :: 19 of 48\nPseudo Genes (multiple problems) :: 18 of 48\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013258.2
GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016111091.1
GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]