Fusobacterium hwasookii ChDC F206 plasmid unnamed, complete sequence.
type: Entry
definition: Fusobacterium hwasookii ChDC F206 plasmid unnamed, complete sequence.
sequence version: NZ_CP013337.1
sequence date: 2023-03-24
sequence: sequence
division: CON
label: NZ_CP013337.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN03263145
keyword: RefSeq
source: Fusobacterium hwasookii ChDC F206
organism: Fusobacterium hwasookii ChDC F206
taxonomy: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP013337.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2014\nAssembly Method :: AllPaths_LG v. 47944; SSPACE v. 2.3.1;\n GapCloser v. 1.21\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1331.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 13:21:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,402\nCDSs (total) :: 2,344\nGenes (coding) :: 2,307\nCDSs (with protein) :: 2,307\nGenes (RNA) :: 58\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 40\nncRNAs :: 3\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 7 of 37\nPseudo Genes (incomplete) :: 31 of 37\nPseudo Genes (internal stop) :: 4 of 37\nPseudo Genes (multiple problems) :: 4 of 37\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5838
topology: circular
so has quality: SO_0000988
location: 1..5838
location: region:1-5838:1
RO_0002162: 1307443

NZ_CP013337
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN03263145
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Kook, J.-K.
author: Park, S.-N.
author: Lim, Y.K.
author: Jo, E.
journal: Submitted (16-NOV-2015) Korean Collection for Oral Microbiology and Department of Oral Biochemistry, School of Dentistry, Chosun University, 309 Pilum-daero, Dong-gu, Gwangju 61452, Republic of Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5838:1
position: 5838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5838:1:source
so part of: sequence
organism: Fusobacterium hwasookii ChDC F206
mol type: genomic DNA
strain: ChDC F206
isolation source: subgingival plaque
host: Homo sapiens
culture collection: KCOM:1258
plasmid: unnamed
country: South Korea: Gwangju
lat lon: 36.09 N 128.05 E
collection date: 2005-03-01

1307443
type: Taxonomy
SIO_000068: taxonomy

RN92_RS11795
type: Gene
subclass of: SO_0000704
RO_0002162: 1307443
locus tag: RN92_RS11795
old locus tag: RN92_11785
so part of: sequence
location: join(4749..5838,1..272)
location: region:1-5838:1
so has part: feature:4749-5838:1:exon
so has part: feature:1-272:1:exon
subclass of: SO_0000010

60660295
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:4749-5838:1:exon

position:4749:1
position: 4749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-272:1:exon

position:272:1
position: 272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RN92_RS11795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1307443
locus tag: RN92_RS11795
old locus tag: RN92_11785
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MNNDLVKVHKDFTKLNIGTLSEKELELFYYICLNVKDIRDEIITMDFSSIKKSLGLINFRDLKKYILGLHQKLGNLHITNITNKKIETIFLFEKFINDLDNNTLTIRVTKDSLYFFNIANSYLRFLFSDVRKLSGKYSKLLVPYLMEFSHKKEAEFEKERFFNILEVEESYRNNLSDFNKRILKPAVEELKTLFENLKVERLKNGRVIKGYKFSWTNDFNFQNKKDNIEEAEVVEEKENKNIAPGELEKYFKTTFPGVNYSKKHKEVLEKLLKNNSLEYIKKYLSEQWEYVQNDKNILNKSAYFSKLILEEKAVYKNHLPADYKELKVEERNRNIESTNTITSLKDLVEKDITDYEVRKNITPEQIEQEVLFKIDVTEEEYNKIKEDWIIKQKEVIPNSDPELLEVIFNASQSKKYNIINTKEEVNEKEKELHELEENIKRMQEELNKLKKGV
SIO_010081: RN92_RS11795
subclass of: SO_0000673
so part of: RN92_RS11795
location: join(4749..5838,1..272)
location: region:1-5838:1
so has part: feature:4749-5838:1:exon
so has part: feature:1-272:1:exon

WP_060555514.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4749-5838:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-272:1:exon

RN92_RS11800
type: Gene
subclass of: SO_0000704
RO_0002162: 1307443
locus tag: RN92_RS11800
old locus tag: RN92_11790
so part of: sequence
location: complement(322..567)
location: region:322-567:-1
so has part: feature:322-567:-1:exon
subclass of: SO_0000010

60660296
type: Gene
SIO_000068: ncbigene

position:322:-1
position: 322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:567:-1
position: 567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:322-567:-1:exon

RN92_RS11800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1307443
locus tag: RN92_RS11800
old locus tag: RN92_11790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005970073.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEATKKIKKTLEELKAIELDKIEKSKKKLKELEKKVQEERNKKLLYEFKDLDDFNLEKVINFIRQLKKDIEKEEKEKVEKK
SIO_010081: RN92_RS11800
subclass of: SO_0000673
so part of: RN92_RS11800
location: complement(322..567)
location: region:322-567:-1
so has part: feature:322-567:-1:exon

WP_060555506.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:322-567:-1:exon

RN92_RS11805
type: Gene
subclass of: SO_0000704
RO_0002162: 1307443
locus tag: RN92_RS11805
old locus tag: RN92_11795
so part of: sequence
location: 950..1264
location: region:950-1264:1
so has part: feature:950-1264:1:exon
subclass of: SO_0000010

60660297
type: Gene
SIO_000068: ncbigene

position:950:1
position: 950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1264:1
position: 1264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:950-1264:1:exon

RN92_RS11805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1307443
locus tag: RN92_RS11805
old locus tag: RN92_11795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005911310.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKFTLRLTEDEKKLLDIKADELGKSKNEVLKFLINNKLEDTKKEFDLLNELDKNYKELGFQIKKIGVVLNQINKNFYEDKNIQIEEIQGALDELWQSIKVSKE
SIO_010081: RN92_RS11805
subclass of: SO_0000673
so part of: RN92_RS11805
location: 950..1264
location: region:950-1264:1
so has part: feature:950-1264:1:exon

WP_023039299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:950-1264:1:exon

RN92_RS11810
type: Gene
subclass of: SO_0000704
RO_0002162: 1307443
locus tag: RN92_RS11810
old locus tag: RN92_11800
so part of: sequence
location: 1234..2280
location: region:1234-2280:1
so has part: feature:1234-2280:1:exon
subclass of: SO_0000010

60660298
type: Gene
SIO_000068: ncbigene

position:1234:1
position: 1234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2280:1
position: 2280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1234-2280:1:exon

RN92_RS11810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1307443
locus tag: RN92_RS11810
old locus tag: RN92_11800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008702895.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MAVYKSVKGVGKTKSSLYNILKYVGSQNENEKDDRVYKTTGINVSDDYKKAFKEMMLTKELHCKLDGRQYRHHIQSFKPGEVDEETAHKMAVEFAEKNFKGFDVFISTHIDKGHIHNHIIINTVNIDTGMKFRELNKNEYNQKKENNVELKSHEFYLEDLKKSSDEICLANNLSVIPQKEKAESQNIYNRREYNVVMNKTSYKMELAKDIKRASKNCKSKEDFIKALDEKGVIVDWEDHKKHITFKFKDEKKKSIRLANLEKTFQDETFKKEYLEQQFLINQKTEEIGNFKIKVNTEAEKTNEEKYQELLNKKREQDKLIAEEKLKKQKEEIEKKKNLNRNKGFGIGD
SIO_010081: RN92_RS11810
subclass of: SO_0000673
so part of: RN92_RS11810
location: 1234..2280
location: region:1234-2280:1
so has part: feature:1234-2280:1:exon

WP_060555508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1234-2280:1:exon

RN92_RS11815
type: Gene
subclass of: SO_0000704
RO_0002162: 1307443
locus tag: RN92_RS11815
old locus tag: RN92_11805
so part of: sequence
location: 2283..3020
location: region:2283-3020:1
so has part: feature:2283-3020:1:exon
subclass of: SO_0000010

60660299
type: Gene
SIO_000068: ncbigene

position:2283:1
position: 2283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3020:1
position: 3020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2283-3020:1:exon

RN92_RS11815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1307443
locus tag: RN92_RS11815
old locus tag: RN92_11805
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005970077.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAILDDDDVNEVKNVNEQEIKMDSYIKKIIENVLEVQLKEHKEIASIAKTKIAEVTLELEKLKQLEKATTKYRDDTNIITNKMIENVENYNKVFLERINKFNLLMVEKLNEVKNTNQIFAETLDKSDIVDNLNKSRAEIFEKFSTDVATKTNNTFNLIENSLNKLKIAFYTAVSVIVIFLFFTGIILYKTNNRVASVEESLNNISSSVTGLVKGDLKFWYSEEDKKAYVSNVESIKKNKDSKKKK
SIO_010081: RN92_RS11815
subclass of: SO_0000673
so part of: RN92_RS11815
location: 2283..3020
location: region:2283-3020:1
so has part: feature:2283-3020:1:exon

WP_060555510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2283-3020:1:exon

RN92_RS11820
type: Gene
subclass of: SO_0000704
RO_0002162: 1307443
locus tag: RN92_RS11820
old locus tag: RN92_11810
so part of: sequence
location: complement(3136..3669)
location: region:3136-3669:-1
so has part: feature:3136-3669:-1:exon
subclass of: SO_0000010

60660300
type: Gene
SIO_000068: ncbigene

position:3136:-1
position: 3136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3669:-1
position: 3669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3136-3669:-1:exon

RN92_RS11820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1307443
locus tag: RN92_RS11820
old locus tag: RN92_11810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005970079.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVQGLGLAKKYLEKINEITKLENGTYDVTFIDDVKVNYAPKGIKKAVMTYVDETLKDFVKPEEEVTESVSNIDSNIKSNIDEKQEFQLTVPEKYNSLFNEENLEILFNIVNERKVYVNNETVVLPEHYRTLKNDITISMKTNSEIYSNFKKYAATNGITVASLMNYIMDMFLKNVKK
SIO_010081: RN92_RS11820
subclass of: SO_0000673
so part of: RN92_RS11820
location: complement(3136..3669)
location: region:3136-3669:-1
so has part: feature:3136-3669:-1:exon

WP_060555512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3136-3669:-1:exon