Planococcus versutus strain L10.15 plasmid pPS15-1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Planococcaceae; Planococcus.
Submitted (21-OCT-2016) Institute of Biological Sciences, University of Malaya, University of Malaya, Kuala Lumpur 50603, Malaysia
Submitted (11-JUL-2016) Institute of Biological Sciences, University of Malaya, University of Malaya, Kuala Lumpur 50603, Malaysia
Submitted (02-APR-2013) Genetics, University of Malaya, B502 Quorum Sensing Laboratory, Lembah Pantai, Kuala Lumpur 50603, Malaysia
REFSEQ INFORMATION: The reference sequence is identical to\nCP016541.2.\n\nOn Nov 17, 2016 this sequence version replaced NZ_CP016541.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2\nGenome Coverage :: 211.93\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 01:15:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,394\nCDSs (total) :: 3,291\nGenes (coding) :: 3,233\nCDSs (with protein) :: 3,233\nGenes (RNA) :: 103\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 4\nPseudo Genes (total) :: 58\nCDSs (without protein) :: 58\nPseudo Genes (ambiguous residues) :: 0 of 58\nPseudo Genes (frameshifted) :: 39 of 58\nPseudo Genes (incomplete) :: 17 of 58\nPseudo Genes (internal stop) :: 12 of 58\nPseudo Genes (multiple problems) :: 9 of 58\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037287.2
COORDINATES: similar to AA sequence:RefSeq:WP_003100176.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008591948.1
COORDINATES: protein motif:HMM:NF037419.2
COORDINATES: similar to AA sequence:RefSeq:WP_020006637.1
COORDINATES: similar to AA sequence:RefSeq:WP_016427131.1
COORDINATES: similar to AA sequence:RefSeq:WP_004225276.1
COORDINATES: similar to AA sequence:RefSeq:WP_006830401.1
COORDINATES: similar to AA sequence:RefSeq:WP_019413821.1
COORDINATES: similar to AA sequence:RefSeq:WP_008496316.1
COORDINATES: similar to AA sequence:RefSeq:WP_008496315.1
COORDINATES: similar to AA sequence:RefSeq:WP_008497729.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006830323.1
COORDINATES: similar to AA sequence:RefSeq:WP_008498854.1
COORDINATES: similar to AA sequence:RefSeq:WP_008430084.1
COORDINATES: similar to AA sequence:RefSeq:WP_010304738.1
COORDINATES: protein motif:HMM:NF019997.2
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024554.2
DUF3991 and TOPRIM domain-containing protein
COORDINATES: protein motif:HMM:NF037847.2
COORDINATES: similar to AA sequence:RefSeq:WP_002191650.1
COORDINATES: protein motif:HMM:NF025081.2
COORDINATES: similar to AA sequence:RefSeq:WP_003204199.1
COORDINATES: similar to AA sequence:RefSeq:WP_016110490.1
membrane lipoprotein lipid attachment site-containing protein
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019392498.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003531051.1
COORDINATES: similar to AA sequence:RefSeq:WP_018395686.1
COORDINATES: protein motif:HMM:NF020291.2
primase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014898.2
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_006836916.1
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF024734.2
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007500381.1
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015327917.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346986.1
COORDINATES: similar to AA sequence:RefSeq:WP_013523563.1
COORDINATES: similar to AA sequence:RefSeq:WP_019535089.1
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012810866.1
glyoxalase/bleomycin resistance protein/dioxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_003187094.1
COORDINATES: similar to AA sequence:RefSeq:WP_016205476.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008496984.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037898.2
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF025304.2
helix-turn-helix domain-containing protein