Amycolatopsis keratiniphila plasmid pXL100, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis; Amycolatopsis japonica group.
Complete genome sequence and comparative genomic analyses of the vancomycin-producing Amycolatopsis orientalis
Submitted (28-FEB-2012) Shanghai Laiyi Center for Biopharmaceuticals R&D, Shanghai, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP003411.1.\nBacteria available from Shanghai Laiyi Center for\nBiopharmaceuticals R&D, Shanghai 201203, P.R. China,\nhccbred@gmail.com.\nThe organism was changed from 'Amycolatopsis orientalis HCCB10007'\nto 'Amycolatopsis keratiniphila' in October 2018.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Taxonomic-Update-Statistics-START##\nThis Genome (query) :: GCA_000400635.2\nCurrent Name :: Amycolatopsis keratiniphila\nPrevious Name :: Amycolatopsis orientalis HCCB10007\nDate Updated :: 2018-10-26\nAnalysis Type :: Average Nucleotide Identity (ANI)\nAnalysis 1 (A1) :: Query vs. TYPE genome for current name\nA1 Genome (subject) :: GCA_001620365.2\nA1 Name :: Amycolatopsis keratiniphila\nA1 ANI :: 96.94781%\nA1 Query Coverage :: 84.86%\nA1 Subject Coverage :: 83.93%\nAnalysis 2 (A2) :: Query vs. TYPE genome for previous name\nA2 Genome (subject) :: GCA_000478275.1\nA2 Name :: Amycolatopsis orientalis HCCB10007\nA2 ANI :: 90.22668%\nA2 Query Coverage :: 73.73%\nA2 Subject Coverage :: 73.08%\n##Taxonomic-Update-Statistics-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 15:06:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,313\nCDSs (total) :: 8,248\nGenes (coding) :: 8,196\nCDSs (with protein) :: 8,196\nGenes (RNA) :: 65\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 52\nCDSs (without protein) :: 52\nPseudo Genes (ambiguous residues) :: 0 of 52\nPseudo Genes (frameshifted) :: 13 of 52\nPseudo Genes (incomplete) :: 38 of 52\nPseudo Genes (internal stop) :: 4 of 52\nPseudo Genes (multiple problems) :: 2 of 52\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012832458.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005465500.1
COORDINATES: similar to AA sequence:RefSeq:WP_016337816.1
COORDINATES: protein motif:HMM:NF025052.2
COORDINATES: protein motif:HMM:NF015620.2
COORDINATES: similar to AA sequence:RefSeq:WP_020421141.1
COORDINATES: similar to AA sequence:RefSeq:WP_007075540.1
COORDINATES: similar to AA sequence:RefSeq:WP_019032885.1
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: similar to AA sequence:RefSeq:WP_013227942.1
RRQRL motif-containing zinc-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020628627.1
COORDINATES: protein motif:HMM:NF020952.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020420360.1
COORDINATES: protein motif:HMM:NF012514.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024803.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]