Mammaliicoccus sciuri strain FDAARGOS_285 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Mammaliicoccus.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (09-DEC-2017) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA
Submitted (20-JUN-2017) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP022047.2.\n\nOn Mar 13, 2018 this sequence version replaced NZ_CP022047.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CA v. 8.2\nGenome Coverage :: 7615.73x\nSequencing Technology :: PacBio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 21:25:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,842\nCDSs (total) :: 2,761\nGenes (coding) :: 2,744\nCDSs (with protein) :: 2,744\nGenes (RNA) :: 81\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 7 of 17\nPseudo Genes (incomplete) :: 12 of 17\nPseudo Genes (internal stop) :: 4 of 17\nPseudo Genes (multiple problems) :: 4 of 17\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_016912270.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
diacylglycerol kinase family lipid kinase
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_002511972.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_000228874.1
type I toxin-antitoxin system Fst family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002487748.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_002484408.1
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF033608.1
COORDINATES: similar to AA sequence:RefSeq:WP_000493114.1
COORDINATES: similar to AA sequence:RefSeq:WP_002484399.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF037847.2
COORDINATES: similar to AA sequence:RefSeq:WP_012095446.1
COORDINATES: similar to AA sequence:RefSeq:WP_001832811.1
COORDINATES: similar to AA sequence:RefSeq:WP_000889978.1
COORDINATES: similar to AA sequence:RefSeq:WP_020360234.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: protein motif:HMM:TIGR04226.1
GO:0018262 - isopeptide cross-linking [Evidence IEA]
isopeptide-forming domain-containing fimbrial protein
COORDINATES: protein motif:HMM:NF020291.2
primase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:YP_500868.1
COORDINATES: protein motif:HMM:NF015509.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016999333.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003216320.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017464885.1
COORDINATES: similar to AA sequence:RefSeq:WP_002497247.1
COORDINATES: protein motif:HMM:NF020157.2
COORDINATES: similar to AA sequence:RefSeq:WP_009371243.1
COORDINATES: protein motif:HMM:NF037678.2
COORDINATES: similar to AA sequence:RefSeq:WP_012260379.1
COORDINATES: similar to AA sequence:RefSeq:WP_008176924.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000111526.1
COORDINATES: similar to AA sequence:RefSeq:WP_002437031.1
COORDINATES: protein motif:HMM:NF015674.2
COORDINATES: similar to AA sequence:RefSeq:WP_010769505.1
GO:0015267 - channel activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024804.2
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016913203.1
COORDINATES: similar to AA sequence:RefSeq:WP_014634777.1
COORDINATES: similar to AA sequence:RefSeq:WP_016912103.1
COORDINATES: similar to AA sequence:RefSeq:WP_017804521.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
accessory Sec system glycosyltransferase GtfA
COORDINATES: similar to AA sequence:RefSeq:WP_011302111.1
GO:0031647 - regulation of protein stability [Evidence IEA]
accessory Sec system glycosylation chaperone GtfB
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: protein motif:HMM:NF025056.2
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016912212.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002140056.1
COORDINATES: similar to AA sequence:RefSeq:WP_002512598.1
COORDINATES: similar to AA sequence:RefSeq:WP_017001027.1
COORDINATES: similar to AA sequence:RefSeq:WP_002510376.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000758007.1
COORDINATES: similar to AA sequence:RefSeq:WP_002466950.1
PhzF family phenazine biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_019377240.1
COORDINATES: similar to AA sequence:RefSeq:WP_014612785.1
GO:0008375 - acetylglucosaminyltransferase activity [Evidence IEA]
GO:0042710 - biofilm formation [Evidence IEA]
poly-beta-1,6-N-acetyl-D-glucosamine synthase
COORDINATES: protein motif:HMM:TIGR03932.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0045226 - extracellular polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002484506.1
GO:0019213 - deacetylase activity [Evidence IEA]
intercellular adhesin biosynthesis polysaccharide N-deacetylase
COORDINATES: protein motif:HMM:NF013884.2
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]