Latilactobacillus curvatus JCM 1096 = DSM 20019 plasmid pLDW-27, complete sequence.
Latilactobacillus curvatus JCM 1096 = DSM 20019
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Latilactobacillus.
The whole genome sequencing and assembly of Lactobacillus curvatus DSM 20019T strain
Submitted (18-JAN-2018) Kyungpook National University, School of Applied Biosciences, 80 Daehak-Ro, Bukgu, Daegu 41566, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP026117.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT analysis 2.3 v. HGAP protocol 2\nGenome Coverage :: 245.95\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 02:56:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,987\nCDSs (total) :: 1,899\nGenes (coding) :: 1,839\nCDSs (with protein) :: 1,839\nGenes (RNA) :: 88\nrRNAs :: 6, 6, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 7 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 3\nPseudo Genes (total) :: 61\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 61\nPseudo Genes (frameshifted) :: 27 of 61\nPseudo Genes (incomplete) :: 26 of 61\nPseudo Genes (internal stop) :: 16 of 61\nPseudo Genes (multiple problems) :: 9 of 61\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011590370.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ketopantoate reductase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004265799.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004265779.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003566763.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
cyclopropane-fatty-acyl-phospholipid synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004271261.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:1905887 - autoinducer AI-2 transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004271258.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011373763.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011373764.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008716 - D-alanine-D-alanine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011373765.1
COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
GO:0004803 - transposase activity [Evidence IEA]
IS30-like element ISLpl1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011373848.1
COORDINATES: similar to AA sequence:RefSeq:WP_011373847.1
COORDINATES: similar to AA sequence:RefSeq:WP_011373846.1
COORDINATES: similar to AA sequence:RefSeq:WP_016385327.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010491466.1
proline-specific peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611112.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011373843.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011373842.1