Latilactobacillus curvatus JCM 1096 = DSM 20019 plasmid pLDW-27, complete sequence.
type: Entry
definition: Latilactobacillus curvatus JCM 1096 = DSM 20019 plasmid pLDW-27, complete sequence.
sequence version: NZ_CP026117.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP026117.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07459897
keyword: RefSeq
source: Latilactobacillus curvatus JCM 1096 = DSM 20019
organism: Latilactobacillus curvatus JCM 1096 = DSM 20019
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Latilactobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP026117.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT analysis 2.3 v. HGAP protocol 2\nGenome Coverage :: 245.95\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 02:56:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,987\nCDSs (total) :: 1,899\nGenes (coding) :: 1,839\nCDSs (with protein) :: 1,839\nGenes (RNA) :: 88\nrRNAs :: 6, 6, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 7 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 3\nPseudo Genes (total) :: 61\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 61\nPseudo Genes (frameshifted) :: 27 of 61\nPseudo Genes (incomplete) :: 26 of 61\nPseudo Genes (internal stop) :: 16 of 61\nPseudo Genes (multiple problems) :: 9 of 61\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18445
topology: circular
so has quality: SO_0000988
location: 1..18445
location: region:1-18445:1
RO_0002162: 1293592

NZ_CP026117
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07459897
type: BioSample
SIO_000068: biosample

1
title: The whole genome sequencing and assembly of Lactobacillus curvatus DSM 20019T strain
author: Kim, J.-Y.
author: Park, M.-K.
author: Lee, Y.-J.
author: Yi, H.
author: Bahn, Y.-S.
author: Kim, J.F.
author: Lee, D.-W.
journal: Unpublished

2
title: Direct Submission
author: Kim, J.-Y.
author: Park, M.-K.
author: Lee, Y.-J.
author: Yi, H.
author: Bahn, Y.-S.
author: Kim, J.F.
author: Lee, D.-W.
journal: Submitted (18-JAN-2018) Kyungpook National University, School of Applied Biosciences, 80 Daehak-Ro, Bukgu, Daegu 41566, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18445:1
position: 18445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18445:1:source
so part of: sequence
organism: Latilactobacillus curvatus JCM 1096 = DSM 20019
mol type: genomic DNA
strain: DSM 20019
isolation source: milk
culture collection: DSM:20019
type material: type strain of Lactobacillus curvatus
plasmid: pLDW-27
country: Germany
collection date: 1965

1293592
type: Taxonomy
SIO_000068: taxonomy

LCU_RS09740
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09740
old locus tag: LCU_09750
pseudo: true
so part of: sequence
location: <25..218
location: region:25-218:1
so has part: feature:25-218:1:exon
subclass of: SO_0000010

49611731
type: Gene
SIO_000068: ncbigene

position:25:1
position: 25
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:218:1
position: 218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25-218:1:exon

LCU_RS09740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09740
old locus tag: LCU_09750
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011590370.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ketopantoate reductase C-terminal domain-containing protein
SIO_010081: LCU_RS09740
subclass of: SO_0000673
so part of: LCU_RS09740
location: <25..218
location: region:25-218:1
so has part: feature:25-218:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25-218:1:exon

LCU_RS09745
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09745
old locus tag: LCU_09755
so part of: sequence
location: 236..703
location: region:236-703:1
so has part: feature:236-703:1:exon
subclass of: SO_0000010

49611732
type: Gene
SIO_000068: ncbigene

position:236:1
position: 236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:703:1
position: 703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236-703:1:exon

LCU_RS09745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09745
old locus tag: LCU_09755
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004265799.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: universal stress protein
translation: MTEKRQLNIEVESMHYQKLLIAIDDDDTTSSKRAFNYACTLAKAYQIPLGIVSILETGDLNIYQSLSPNVVEGRREEIATDLDVYVQKAKEFGVEDVTPILNEGNPGHVIVEEVIPSFQPDLVICGSKTKPSKHLIGTHASYLAKYAPCSVTVVR
SIO_010081: LCU_RS09745
subclass of: SO_0000673
so part of: LCU_RS09745
location: 236..703
location: region:236-703:1
so has part: feature:236-703:1:exon

WP_054644328.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:236-703:1:exon

LCU_RS09750
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09750
old locus tag: LCU_09760
so part of: sequence
location: 728..1456
location: region:728-1456:1
so has part: feature:728-1456:1:exon
subclass of: SO_0000010

49611733
type: Gene
SIO_000068: ncbigene

position:728:1
position: 728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1456:1
position: 1456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:728-1456:1:exon

LCU_RS09750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09750
old locus tag: LCU_09760
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIECTQCHIKYGRKLHQCPNCGLVHQSTQTKQQTSLLQQYYQFLARSLKQPLKVQWQWANLWFGLVTFGLVILMNTATASLLIASWSEQIGAVAGVMASQIVLRQRLNLLPLDMKALGGQLFILVVVLGIGFLLKRYLLKKTTTTLRAYLTEISAYSGITVILALAALLAALCFGMTAIWFVLIMVAVMYVSLNIAVGISLFQTRWAAFDRVYAILLFEILTHVVLAIGISQIVILNLLTGL
SIO_010081: LCU_RS09750
subclass of: SO_0000673
so part of: LCU_RS09750
location: 728..1456
location: region:728-1456:1
so has part: feature:728-1456:1:exon

WP_035186146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:728-1456:1:exon

LCU_RS09755
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09755
old locus tag: LCU_09765
pseudo: true
so part of: sequence
location: 1540..1754
location: region:1540-1754:1
so has part: feature:1540-1754:1:exon
subclass of: SO_0000010

49611734
type: Gene
SIO_000068: ncbigene

position:1540:1
position: 1540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1754:1
position: 1754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1540-1754:1:exon

LCU_RS09755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09755
old locus tag: LCU_09765
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004265779.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: LCU_RS09755
subclass of: SO_0000673
so part of: LCU_RS09755
location: 1540..1754
location: region:1540-1754:1
so has part: feature:1540-1754:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1540-1754:1:exon

LCU_RS09760
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09760
old locus tag: LCU_09770
so part of: sequence
location: complement(2139..3326)
location: region:2139-3326:-1
so has part: feature:2139-3326:-1:exon
subclass of: SO_0000010

49611735
type: Gene
SIO_000068: ncbigene

position:2139:-1
position: 2139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3326:-1
position: 3326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2139-3326:-1:exon

LCU_RS09760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09760
old locus tag: LCU_09770
EC number: 2.1.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003566763.1
GO function: GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cyclopropane-fatty-acyl-phospholipid synthase family protein
translation: MLEKTFYKKLLQHSFDFPVTVNYWDGSSETYGSGEPEVAITFKKAIPIKQLSSNASLALGEAYMAGDLEVTSNTTDTPLQKLLTAAYTSADSFMRNSRYIHLIPKQSHSEKASKKDIQSHYDLGNDFYQLWLDKTMTYSCAYFEKPTDDLETAQINKVHHILRKLNPQPNRTLLDIGCGWGTLMLTAAKEYHLKVVGITLSQEQYDFVQQRINDEGLSDVASVQLVDYRELKHAPFDYITSVGMFEHVGEENLGAYFQDIADYLTDDGVALLHGITRQQGGARNAWINKYIFPGGYVPGLVENTQHIINAELQIADMEPLRRHYQKTLEIWTANFNAQKDVILPKAGPEFVRMWDLYLQACASSFESGNIDVIQYLVSKGPSARDLPMTREYMYD
SIO_010081: LCU_RS09760
subclass of: SO_0000673
so part of: LCU_RS09760
location: complement(2139..3326)
location: region:2139-3326:-1
so has part: feature:2139-3326:-1:exon

WP_056966977.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2139-3326:-1:exon

LCU_RS09765
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09765
old locus tag: LCU_09775
so part of: sequence
location: 3482..4522
location: region:3482-4522:1
so has part: feature:3482-4522:1:exon
subclass of: SO_0000010

49611736
type: Gene
SIO_000068: ncbigene

position:3482:1
position: 3482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4522:1
position: 4522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3482-4522:1:exon

LCU_RS09765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09765
old locus tag: LCU_09775
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004271261.1
GO function: GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO process: GO:1905887 - autoinducer AI-2 transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AI-2E family transporter
translation: MSLYQKFVTNQQLRRVVVLLTLIGVIYVSRSMMNIILLTFIFTFLVTQLVRKVQQYSKIPPAAVVVPLYMLVIFLVYLAVTIYVPQIAKQSIKLGESVYNFYQSPSFDANQFMRTIGDYMKQFNLTDQLKHGVSTIVNYITGIGTMGVTIVLSFILSFFYTIELDRLPQFGKLFLKSTYGWFFQDIMYFAKKFVNTFGVVIEAQIFIAIVNTVLTTITLTVMKMPNIPSLAIMIFLLSMVPVAGVIVSCIPLCIIAFSVGGIQYVVYILVMILVIHALEAYVLNPRFMSSKTQLPIFFTFVVLFVAERFLGTWGLIVGLPIFTFFLDVLGVKTIQKSGKKQKKAAN
SIO_010081: LCU_RS09765
subclass of: SO_0000673
so part of: LCU_RS09765
location: 3482..4522
location: region:3482-4522:1
so has part: feature:3482-4522:1:exon

WP_056966974.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3482-4522:1:exon

LCU_RS09770
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09770
old locus tag: LCU_09780
so part of: sequence
location: complement(4515..4745)
location: region:4515-4745:-1
so has part: feature:4515-4745:-1:exon
subclass of: SO_0000010

49611737
type: Gene
SIO_000068: ncbigene

position:4515:-1
position: 4515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4745:-1
position: 4745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4515-4745:-1:exon

LCU_RS09770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09770
old locus tag: LCU_09780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004271258.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MFGQLLHDKRTAKNLTMQQLADLLSAKYNTKISSSMIFRWEKGAAPSLKALFIVAIELQIDLNQLATLVADPNRVN
SIO_010081: LCU_RS09770
subclass of: SO_0000673
so part of: LCU_RS09770
location: complement(4515..4745)
location: region:4515-4745:-1
so has part: feature:4515-4745:-1:exon

WP_056966972.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4515-4745:-1:exon

LCU_RS09775
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09775
old locus tag: LCU_09785
so part of: sequence
location: 4913..5104
location: region:4913-5104:1
so has part: feature:4913-5104:1:exon
subclass of: SO_0000010

49611738
type: Gene
SIO_000068: ncbigene

position:4913:1
position: 4913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5104:1
position: 5104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4913-5104:1:exon

LCU_RS09775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09775
old locus tag: LCU_09785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011373763.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MAEKLFVLSGYLKGHDLKQQVVADVLGKTLTTANRKIRGKIPFTVKEIQLLHDRLGIPIDVFF
SIO_010081: LCU_RS09775
subclass of: SO_0000673
so part of: LCU_RS09775
location: 4913..5104
location: region:4913-5104:1
so has part: feature:4913-5104:1:exon

WP_004271259.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4913-5104:1:exon

LCU_RS09780
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09780
old locus tag: LCU_09790
so part of: sequence
location: complement(5203..6255)
location: region:5203-6255:-1
so has part: feature:5203-6255:-1:exon
subclass of: SO_0000010

49611739
type: Gene
SIO_000068: ncbigene

position:5203:-1
position: 5203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6255:-1
position: 6255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5203-6255:-1:exon

LCU_RS09780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09780
old locus tag: LCU_09790
EC number: 6.3.2.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011373764.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0008716 - D-alanine-D-alanine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: D-alanine--D-alanine ligase
translation: MKIVVLAGGRSTERNVSLTSGHKITNALQTKGHDVAFVDLFLGNDLHDVASIDDLYSSTPVEKDYDISDEVLTDDAINALRTDGSTQLFGPNVLEICKTADIVFLALHGGDGEDGKVQAVLDLFGIPYTGSDTLAAGITMSKKVSKEILLYNQIPTARFVAAYRDQPMPEIPFEYPVVVKPSNGGSSVGTHIVHNEAELQPAVEDALRFDREALIEEFIKGREFSLGVINGQPLPAIEIVVNDGWYDFEHKFVTGNTTQFVTPPNDLPDDVHEAMKQMALDAMQALGLTNYARIDFFWSPENGLHVIEGNTLPGMTPLSLIPQEAEVLGISYPDLCEMIVQGKLELLKAK
SIO_010081: LCU_RS09780
subclass of: SO_0000673
so part of: LCU_RS09780
location: complement(5203..6255)
location: region:5203-6255:-1
so has part: feature:5203-6255:-1:exon

WP_039098404.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5203-6255:-1:exon

LCU_RS09785
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09785
old locus tag: LCU_09795
so part of: sequence
location: 6448..6888
location: region:6448-6888:1
so has part: feature:6448-6888:1:exon
subclass of: SO_0000010

49611740
type: Gene
SIO_000068: ncbigene

position:6448:1
position: 6448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6888:1
position: 6888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6448-6888:1:exon

LCU_RS09785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09785
old locus tag: LCU_09795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011373765.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Hsp20/alpha crystallin family protein
translation: MANELMNGRQNWLDNFGGDDWFKNFGQQLLAMSPETDNLLKTDVKETDKDYQLAVDLPGLDKKDIHVDYQDNTLKISAKRDSFADHSDSQGNIVQSERHYGRFSRQFYLPGVNRDQIDAQYQDGVLQLMLPKLSESDQPTNPIEIR
SIO_010081: LCU_RS09785
subclass of: SO_0000673
so part of: LCU_RS09785
location: 6448..6888
location: region:6448-6888:1
so has part: feature:6448-6888:1:exon

WP_004271283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6448-6888:1:exon

LCU_RS09790
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09790
old locus tag: LCU_09800
so part of: sequence
location: complement(6936..7475)
location: region:6936-7475:-1
so has part: feature:6936-7475:-1:exon
subclass of: SO_0000010

49611741
type: Gene
SIO_000068: ncbigene

position:6936:-1
position: 6936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7475:-1
position: 7475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6936-7475:-1:exon

LCU_RS09790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09790
old locus tag: LCU_09800
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSPNQAFFLTVIGCLLAISSSYFIVRLNMLKPTLKQNFLDQYPDTDDQAYKAQQSMKQAYFNASFYKQAVPLTSWLVLLFFLSIGGCLTALYLDALNIAIRLLGSAFIFIAFLYLKLPTFQAQHTFWKAYLQAHPENELKVVILPLDSPIQQRRIALLTKFKCCTLVAGLILFYASLFL
SIO_010081: LCU_RS09790
subclass of: SO_0000673
so part of: LCU_RS09790
location: complement(6936..7475)
location: region:6936-7475:-1
so has part: feature:6936-7475:-1:exon

WP_056966970.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6936-7475:-1:exon

LCU_RS09800
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09800
old locus tag: LCU_09810
so part of: sequence
location: 7685..8614
location: region:7685-8614:1
so has part: feature:7685-8614:1:exon
subclass of: SO_0000010

49611742
type: Gene
SIO_000068: ncbigene

position:7685:1
position: 7685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8614:1
position: 8614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7685-8614:1:exon

LCU_RS09800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09800
old locus tag: LCU_09810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30-like element ISLpl1 family transposase
translation: MSSITYSERIKIETFCELGLSNIQMGVRLNRSPSTISYELSRCQPYQAELAQTDAEYKRSRCGRKTKLSDELKQKILNHLRLSWSPGMIAHEFKLATKSIYNWLNQGRIGFSLNDLPEHGVRQRRNVDQRSKYNQSLGRSIEQRPMMINQRKRIGDFELDTVVGPRGHSKAVLLTLIDRKSRFLWAYRLKDRTTATVNEALTKFLTTFNGPVHSFTVDRGTEFSGLVSLESQYGIKTYYCHAYTPAERGSNERFNRNLRYFYPKGTRFEHISAQDLTTTLLQINQRPLKILDWQTPYQVMLTNLSKNSD
SIO_010081: LCU_RS09800
subclass of: SO_0000673
so part of: LCU_RS09800
location: 7685..8614
location: region:7685-8614:1
so has part: feature:7685-8614:1:exon

WP_003592463.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7685-8614:1:exon

LCU_RS09805
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
gene: helD
locus tag: LCU_RS09805
old locus tag: LCU_09815
so part of: sequence
location: complement(8707..10998)
location: region:8707-10998:-1
so has part: feature:8707-10998:-1:exon
subclass of: SO_0000010

49611743
type: Gene
SIO_000068: ncbigene

position:8707:-1
position: 8707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10998:-1
position: 10998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8707-10998:-1:exon

LCU_RS09805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
gene: helD
locus tag: LCU_RS09805
old locus tag: LCU_09815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011373848.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA polymerase recycling motor HelD
translation: MTDEQKSLEQRRLTEIVGLIKNAEKHFEGAVERAKSEEKEINANFFNDVRLNFNNDSAMTETAVSIEQQRQMLQERNNSWQQSSRQLETLQKMEKTPYFARIDFKEKGEPKSESIYIGLGSFTDREDHFLIYDWRAPISSIYYEGKTGEVTYQTPDGPQDVNISLKRQFLIEDGQIKALFDTQETIGDQMLLEVLGEKSDTQMKSIVTTIQREQNQIIRNTDADLLFVQGAAGSGKTSAILQRIAFLLYRYRGNLDSSQVIMFSPNQLFNDYIADVLPELGEQNMIQMTYYQYVARRLPNLAVQSLFDQFETPITETDARISRLKESLVFYKAVKRYAAHLEKGDMRFRDLKVNGKVLISKEKISDVYYRFNENYHLGNRLDATKESLLRSLSHKVDHETKADWVTERAENLSDEELREIMAGKDFKTGEAESKYIAKQIVLKAFKPVQKGIQRNRFLSIQAQYVHFMRVVPQLVDLAEFDLTPEIWNDHVTDFVANLKAKQMTLSDVTPYLHLYDLMTGKHGERDMRFVFIDEIQDYTPYELAFLKMHFPKARFTLLGDLNQAIFTKENSTNLLQQVQQLFNAQNTKVVQLTRSYRSTEQVTDFTKGLLKGGQKIEAFNREGDKPNLIVRQSEDQLVADVNAQLAKNEADKLTTAIITKTLVQAQELTAKLKASGTKVTLIRSENQRLAAGTLVVPSFLAKGLEFDAIIGWQVSATNYNHEDQRQLLYTICSRAMHRLTLLATGGMSPLIDNVDADDYTLIK
SIO_010081: LCU_RS09805
subclass of: SO_0000673
so part of: LCU_RS09805
location: complement(8707..10998)
location: region:8707-10998:-1
so has part: feature:8707-10998:-1:exon

WP_004271190.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8707-10998:-1:exon

LCU_RS09810
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09810
old locus tag: LCU_09820
so part of: sequence
location: complement(11292..11645)
location: region:11292-11645:-1
so has part: feature:11292-11645:-1:exon
subclass of: SO_0000010

49611744
type: Gene
SIO_000068: ncbigene

position:11292:-1
position: 11292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11645:-1
position: 11645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11292-11645:-1:exon

LCU_RS09810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09810
old locus tag: LCU_09820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011373847.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CrcB family protein
translation: MMTLLIVGLGAAIGAILRYQLTRLGTQIASEYPLITFLINLTGSFCLGWVTGAQLDQTWTLFLGVGVLGGYTTFSTFNSELSQLWFRRRYHIFFGYLLLTYGLGLVVAAAGFFVGRS
SIO_010081: LCU_RS09810
subclass of: SO_0000673
so part of: LCU_RS09810
location: complement(11292..11645)
location: region:11292-11645:-1
so has part: feature:11292-11645:-1:exon

WP_004271193.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11292-11645:-1:exon

LCU_RS09815
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09815
old locus tag: LCU_09825
so part of: sequence
location: complement(11642..12049)
location: region:11642-12049:-1
so has part: feature:11642-12049:-1:exon
subclass of: SO_0000010

49611745
type: Gene
SIO_000068: ncbigene

position:11642:-1
position: 11642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12049:-1
position: 12049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11642-12049:-1:exon

LCU_RS09815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09815
old locus tag: LCU_09825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011373846.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CrcB family protein
translation: MKIKESLAVGIFAFFGGILRYAIGLGLHQAAGFPYGTLCVNLIGAFCLPFLMRYIVVRYQISDTLALAMGTGFFGAFTTFSSFSVDALKLLVANQWWPFSLYIGISLIGGVCLSLVADYWAVWLLDRQGKSQVLK
SIO_010081: LCU_RS09815
subclass of: SO_0000673
so part of: LCU_RS09815
location: complement(11642..12049)
location: region:11642-12049:-1
so has part: feature:11642-12049:-1:exon

WP_004271189.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11642-12049:-1:exon

LCU_RS10000
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS10000
so part of: sequence
location: complement(12130..12267)
location: region:12130-12267:-1
so has part: feature:12130-12267:-1:exon
subclass of: SO_0000010

49611782
type: Gene
SIO_000068: ncbigene

position:12130:-1
position: 12130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12267:-1
position: 12267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12130-12267:-1:exon

LCU_RS10000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS10000
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKPNSFRATARVRKIGFLYIGANIIDFVDNSLVIKLLLKSWHYR
SIO_010081: LCU_RS10000
subclass of: SO_0000673
so part of: LCU_RS10000
location: complement(12130..12267)
location: region:12130-12267:-1
so has part: feature:12130-12267:-1:exon

WP_004271191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12130-12267:-1:exon

LCU_RS09820
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09820
old locus tag: LCU_09830
so part of: sequence
location: 12451..14289
location: region:12451-14289:1
so has part: feature:12451-14289:1:exon
subclass of: SO_0000010

49611746
type: Gene
SIO_000068: ncbigene

position:12451:1
position: 12451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14289:1
position: 14289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12451-14289:1:exon

LCU_RS09820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09820
old locus tag: LCU_09830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016385327.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO process: GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation:proton antiporter
translation: MTSLALVIVLLAALMTPLLMAKFKISYLPTAVAEILVGILLGQSGFHLISTTPTLTELSSLGVTVLIFLSGMEIDFELFKKQPTTAKSGVKTPLTPLQLAVGSFTLILLSSLGLASLLAWSGLFTDIGLATILFSTIALGVVIAALKEKELLSQPLGQTILLIAVLGEIVPLISLTIYAALNNPGSKSLWLLSLIFLAAIFLLMRFKTVYHFFERIDKSTTQLDIRLAFFLIITLVSIAEEVGAESILGAFLAGMVMKLLRPREETQDKLTSTGYGFFIPIFFIMTGAKLNIPALLRDPKSLTLIPFFFISFMGAKVLIYFVLKRRFKVTNALAGTFLSSTTITLVLPILTVGLNLKVITTQQSGAFTIAAVISCILGPILFNRFYLPTPEEMPRKRVNFIGANIMTIPIAQQLSKGLYTSELFTNNEQNYQIYHSQANLELLPDLAPATLTDAAVFDTDILVLGYLNNEQNYQLAQQAIQAKVPRIIARFEFKNISDDQYDELKEHGVEIFNTYEANISLLRSLIETPSTLQIIDNTDAGLFEVTVKNRRFTGIQLSNLPFVDQVTISRIYRDKQLIMPHGDTQIHLNDHLILTGNKQAVPAIRRQLETLN
SIO_010081: LCU_RS09820
subclass of: SO_0000673
so part of: LCU_RS09820
location: 12451..14289
location: region:12451-14289:1
so has part: feature:12451-14289:1:exon

WP_054644704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12451-14289:1:exon

LCU_RS09825
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09825
old locus tag: LCU_09835
so part of: sequence
location: 14363..15265
location: region:14363-15265:1
so has part: feature:14363-15265:1:exon
subclass of: SO_0000010

49611747
type: Gene
SIO_000068: ncbigene

position:14363:1
position: 14363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15265:1
position: 15265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14363-15265:1:exon

LCU_RS09825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09825
old locus tag: LCU_09835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010491466.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: proline-specific peptidase family protein
translation: MKQGTTILTLDNGYHLWTNTQGTGDIHLLCLHGGPGGNHEYWENFGKELADLGVQVHMYDQLGSFYSDQPDYSQPGNDQLLTYDYFLDEVEEVRQKLGIDNFYLIGQSWGGALVQMYAAKYGQHLKGAIISSMVDEIDEYVTNINKIREDIMTPEQLKFMQDCEAKNDYDNDEYQALVDKLNAGYVDRKQPLAISHLIPTMATDVYGVFQGDNEFVVTGKLKDWHFRDQLHKITVPTLITFGEHETMPIATAKIMAEKIPHARLVTTPNGGHHHMIDNAPVYFDHLKTFIKDVENGNFND
SIO_010081: LCU_RS09825
subclass of: SO_0000673
so part of: LCU_RS09825
location: 14363..15265
location: region:14363-15265:1
so has part: feature:14363-15265:1:exon

WP_004271194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14363-15265:1:exon

LCU_RS09830
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09830
old locus tag: LCU_09840
so part of: sequence
location: complement(15312..16684)
location: region:15312-16684:-1
so has part: feature:15312-16684:-1:exon
subclass of: SO_0000010

49611748
type: Gene
SIO_000068: ncbigene

position:15312:-1
position: 15312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16684:-1
position: 16684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15312-16684:-1:exon

LCU_RS09830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09830
old locus tag: LCU_09840
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611112.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MTKYSKTLKIKVVQDYLTSSLGYELIARKYGIKSNSLVVSWVQRYKAFGPKGLDVLSPEKTFDGSFKMNVLKWMKTNKASYPKTALHFNISNVGTIWQWQHIWETEGADALYRSKGRQTIMSADKQSKKRQQTELERLREENELLQIENEYPKKIKSLSPGRRKQQAQVIQELRLKHKLVKILKIVGMAKSTYEYIISHEPNGSSDQSVKQTIQIIKKNHPAYGYRRVTGELHRMNILVNHKKVLVLMRELQLLSTAFNKRTRKYNSYRGNVGTVAKNLINRRFFTDRPYQKLVTDVTEVRWGTKTIDERAYFTCIYDLFSGEILSHQVSKHPTVEFTTTVLNRAVKKIPKNLKYRTTVHSDQGFQYQHQDWTHILKEHRIFQSMSRKATCLDNAAMESFFHIMKAEAFYQKETDTYETLVSQISVWIDEYNFSRIKTKLGCKSPIEYRIFTTQKAA
SIO_010081: LCU_RS09830
subclass of: SO_0000673
so part of: LCU_RS09830
location: complement(join(15312..16231,16231..16684))
location: region:15312-16684:-1
so has part: feature:16231-16684:-1:exon
so has part: feature:15312-16231:-1:exon

WP_128486107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16231-16684:-1:exon

position:16231:-1
position: 16231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15312-16231:-1:exon

LCU_RS09835
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09835
old locus tag: LCU_09845
so part of: sequence
location: complement(16772..17236)
location: region:16772-17236:-1
so has part: feature:16772-17236:-1:exon
subclass of: SO_0000010

49611749
type: Gene
SIO_000068: ncbigene

position:16772:-1
position: 16772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17236:-1
position: 17236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16772-17236:-1:exon

LCU_RS09835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09835
old locus tag: LCU_09845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011373843.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MarR family transcriptional regulator
translation: MQPETDSNLVDRFNEWYLQIGQIYNKINHLTVTHDLTYDQFLILREVKLNPNIEVAKLSESFDLSGPAISRKINVLFRKHLIVKNRSDEMDQRKVFISLNEQGLRMVDQLEVDFYLFFKHFKDDGNADLSQLFAQTNHLFDTLDKWEPNSDIID
SIO_010081: LCU_RS09835
subclass of: SO_0000673
so part of: LCU_RS09835
location: complement(16772..17236)
location: region:16772-17236:-1
so has part: feature:16772-17236:-1:exon

WP_004266069.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16772-17236:-1:exon

LCU_RS09840
type: Gene
subclass of: SO_0000704
RO_0002162: 1293592
locus tag: LCU_RS09840
old locus tag: LCU_09850
so part of: sequence
location: 17549..18208
location: region:17549-18208:1
so has part: feature:17549-18208:1:exon
subclass of: SO_0000010

49611750
type: Gene
SIO_000068: ncbigene

position:17549:1
position: 17549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18208:1
position: 18208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17549-18208:1:exon

LCU_RS09840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293592
locus tag: LCU_RS09840
old locus tag: LCU_09850
EC number: 3.1.3.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011373842.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histidine phosphatase family protein
translation: MKRITLYLVRHGQTFFNRYNRMQGWSDSPLTPKGIADAERAGKELAKVNFAQAYSSDRSRAMDTAKIILHKNFYLDTPYAITPHFREEFYGYFEGEDSPKAWYMAGASHDAKTFQEIITKYSLDASKDFMKEADPFHDAEDAAEYWARVGKGFKQLRAECSDGDKVLMVSHGTTIRSIVGKFGNDQFDVTVSPMNGSITKVILTDEGVTVESYNQLTLQ
SIO_010081: LCU_RS09840
subclass of: SO_0000673
so part of: LCU_RS09840
location: 17549..18208
location: region:17549-18208:1
so has part: feature:17549-18208:1:exon

WP_004266073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17549-18208:1:exon