Swingsia samuiensis strain AH83 plasmid unnamed1, complete sequence.
type: Entry
definition: Swingsia samuiensis strain AH83 plasmid unnamed1, complete sequence.
sequence version: NZ_CP038142.1
sequence date: 2023-05-05
sequence: sequence
division: CON
label: NZ_CP038142.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11175157
keyword: RefSeq
source: Swingsia samuiensis
organism: Swingsia samuiensis
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Swingsia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP038142.1.\nBacteria and source DNA available from NBRC.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 19-MAR-2019\nAssembly Method :: HGAP v. 4\nAssembly Name :: Swingsia_samuiensis\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 625.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 03:25:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,106\nCDSs (total) :: 2,028\nGenes (coding) :: 2,008\nCDSs (with protein) :: 2,008\nGenes (RNA) :: 78\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 12 of 20\nPseudo Genes (incomplete) :: 14 of 20\nPseudo Genes (internal stop) :: 7 of 20\nPseudo Genes (multiple problems) :: 9 of 20\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 30193
topology: circular
so has quality: SO_0000988
location: 1..30193
location: region:1-30193:1
RO_0002162: 1293412

NZ_CP038142
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11175157
type: BioSample
SIO_000068: biosample

1
title: The complete genome sequence of Swingsia samuiensis NBRC107927(T)
author: Chua, K.-O.
author: Chan, K.-G.
author: See-Too, W.-S.
journal: Unpublished

2
title: Direct Submission
author: Chua, K.-O.
author: Chan, K.-G.
author: See-Too, W.-S.
journal: Submitted (20-MAR-2019) Institute of Biological Sciences, University of Malaya, University of Malaya, Kuala Lumpur, Kuala Lumpur 50603, Malaysia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30193:1
position: 30193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-30193:1:source
so part of: sequence
organism: Swingsia samuiensis
mol type: genomic DNA
strain: AH83
isolation source: Plant
host: Allamanda cathartica
type material: type strain of Swingsia samuiensis
plasmid: unnamed1
country: Thailand: Samui Island
collection date: 2007-03-14

1293412
type: Taxonomy
SIO_000068: taxonomy

E3D00_RS10315
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10315
old locus tag: E3D00_10310
so part of: sequence
location: 1..1110
location: region:1-1110:1
so has part: feature:1-1110:1:exon
subclass of: SO_0000010

position:1110:1
position: 1110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1110:1:exon

E3D00_RS10315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10315
old locus tag: E3D00_10310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010187859.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MSTQKPQVSPTHIDPFLPYLADLPLRDQREMMERPFFSLAKSKRTKPIDYRSPDGKQWVHVSPNPDYGMATIWDADILMYCISILADMARRGINDIPRKLNLMPYDLLRAIGRPTTGRSYELLGQALDRLVSTTIKTNIRAQNRREATFSWLDGWSQLVDDRTERVRGMTIELSNWLYEGVLMTGGVLSVDRAYFDISGGRERWLYKVARKHAGGAGEAGFAISMPTLFEKSGAEGLYRRFKFEISKLVERNELPGYSLTLETVASKREPIVRMHRIIPPTTRTLSEPSSTTRIKQKTIDTNTSTTRDVTATTFSILRSEFPGWDFETLHQEFRSWIDADPSRTPANYQQAFIGFVRRYDAKNKHILGR
SIO_010081: E3D00_RS10315
subclass of: SO_0000673
so part of: E3D00_RS10315
location: 1..1110
location: region:1-1110:1
so has part: feature:1-1110:1:exon

WP_141462472.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1110:1:exon

E3D00_RS10565
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10565
so part of: sequence
location: 1702..1845
location: region:1702-1845:1
so has part: feature:1702-1845:1:exon
subclass of: SO_0000010

position:1702:1
position: 1702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1845:1
position: 1845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1702-1845:1:exon

E3D00_RS10565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10565
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVSYEAIRRWSLKFGMAYVRRLKRKVAKAGDVWHLDEVSSGPIDLGG
SIO_010081: E3D00_RS10565
subclass of: SO_0000673
so part of: E3D00_RS10565
location: 1702..1845
location: region:1702-1845:1
so has part: feature:1702-1845:1:exon

WP_181442027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1702-1845:1:exon

E3D00_RS10320
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10320
old locus tag: E3D00_10315
so part of: sequence
location: 1877..2634
location: region:1877-2634:1
so has part: feature:1877-2634:1:exon
subclass of: SO_0000010

position:1877:1
position: 1877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2634:1
position: 2634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1877-2634:1:exon

E3D00_RS10320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10320
old locus tag: E3D00_10315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611975.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MSDLYWLTDEQMARLEPFFSNSHGKPRVDDRRVLSGIIFVNRNGLRWRDALREYGPHKTLYNRWKRWSAMGIFIRMMEGLAVGKAEPQTIMIDATYLKAHRTASSLRGKKGGSGRLIGRTKGGMNTKLHAVTDRNGRPLDFFMTAGQISDYTGAAALLDSLPAAQWMLADRGYDADWFRDALEEKGIKPCIPGRKSRGETIKYDKRKYKGRNRIEIMFGRLKDWRRVATRYDRCPTVFFSAICLAATVIFWL
SIO_010081: E3D00_RS10320
subclass of: SO_0000673
so part of: E3D00_RS10320
location: join(1877..2198,2198..2634)
location: region:1877-2634:1
so has part: feature:1877-2198:1:exon
so has part: feature:2198-2634:1:exon

WP_141462474.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1877-2198:1:exon

position:2198:1
position: 2198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2198-2634:1:exon

E3D00_RS10660
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10660
pseudo: true
so part of: sequence
location: <2665..2945
location: region:2665-2945:1
so has part: feature:2665-2945:1:exon
subclass of: SO_0000010

position:2665:1
position: 2665
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:2945:1
position: 2945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2665-2945:1:exon

E3D00_RS10660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011654560.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DDE-type integrase/transposase/recombinase
SIO_010081: E3D00_RS10660
subclass of: SO_0000673
so part of: E3D00_RS10660
location: <2665..2945
location: region:2665-2945:1
so has part: feature:2665-2945:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2665-2945:1:exon

E3D00_RS10325
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10325
old locus tag: E3D00_10320
so part of: sequence
location: 3107..5629
location: region:3107-5629:1
so has part: feature:3107-5629:1:exon
subclass of: SO_0000010

position:3107:1
position: 3107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5629:1
position: 5629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3107-5629:1:exon

E3D00_RS10325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10325
old locus tag: E3D00_10320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013847449.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase family protein
translation: MSKLVFDFSKLGSAKSKQAPTDPIKIFESLPSLKGTPNDLWRGQDQALSGWNKVRAKNDVLISLNTGAGKTIVGLLIAQSLVNEGIDNVIYVCSTIDLVNQTSNEADRIGIDHTIRVCSSYSNDLFEIGKAFCITTYSALFNGHSSIRKRHFPGAIIFDDAHVAEATLRSAFTMRIDIREQKDLFGEIADLFEPHFKELGIRSRFRDSLSQEHHSTAFVAPGGLYERSERLLEIFNRYKLDQHADLKFPFAWLKDNLDACAALFTRGVFEIGPPFLPSLALDIFEQPLRRVYLSATLQSQTEFVRAFGRLPTATVMPSNDAGNGERLIINGRRVKKGLGAAFVSKLVDTRKVVIAIPDYSSAIKWEDIAKPPATEDFSQELTEFRKAKHGAFALVSRVDGIDLPHETCRIMVVDGLPSGMSLIERFQWEYLRMKNVHAVRVANRLAQLFGRINRGRNDYGAFLLEGEDINKWLDNDRNLSLLPPLLQKQVHVGREVHDSGQLKSQKDVIALVDSVLGRDKGWLDYYEREVKLGELDRDQLARAEVAEPFLIKAALSEARYAAAMWSGDLATARRELEKTVDQTATHDTPLGGWHTLWLGAAYERGGDREAALREYAIAMKRLGRSMTLPRATVQPVKNDGQELNEFGRSIWDLLSHEAGAKFEKELEKFARPLNLIDSGTPNQAEAGMRALGELLGLTSTRPDNDEGIGPDVLWRDEKNAKMLAFELKTDKDESGTYSKDDIGQGHNHIEWLEKNYSDFDLLGLLFVGPKGVASNKASPSQEMGLCCTASVVALRDAVLALVEDIRKKTPMERFIAIKTETDQPCWNLEKIHGRLHDKEL
SIO_010081: E3D00_RS10325
subclass of: SO_0000673
so part of: E3D00_RS10325
location: 3107..5629
location: region:3107-5629:1
so has part: feature:3107-5629:1:exon

WP_246091544.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3107-5629:1:exon

E3D00_RS10330
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10330
old locus tag: E3D00_10325
pseudo: true
so part of: sequence
location: complement(5861..>6391)
location: region:5861-6391:-1
so has part: feature:5861-6391:-1:exon
subclass of: SO_0000010

position:5861:-1
position: 5861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6391:-1
position: 6391
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5861-6391:-1:exon

E3D00_RS10330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10330
old locus tag: E3D00_10325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: E3D00_RS10330
subclass of: SO_0000673
so part of: E3D00_RS10330
location: complement(5861..>6391)
location: region:5861-6391:-1
so has part: feature:5861-6391:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5861-6391:-1:exon

E3D00_RS10335
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10335
old locus tag: E3D00_10330
so part of: sequence
location: complement(6890..7594)
location: region:6890-7594:-1
so has part: feature:6890-7594:-1:exon
subclass of: SO_0000010

position:6890:-1
position: 6890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7594:-1
position: 7594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6890-7594:-1:exon

E3D00_RS10335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10335
old locus tag: E3D00_10330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006699241.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6 family transposase
translation: MSIPPVSYKRHRFPRELIAHAVWLYFRFPLSFRLIEEMLLERGMMVSYETIRRWSLKFGVTYARRLKRKAAKPGDVWHLDEVRIVIGGQVHWLWRAVDQDGYILDEILQTRRNTKAAQRLLTRLLRKQGVRPRRIITDKLKSYGAAKRKLRLSVRHLSHKGLNNRAENSHLPLRKRERVMQKFRSPSGCQRFVSVFSTVRNLFIPPAANTNALTRHSHRIQAFEQWKVAASLAA
SIO_010081: E3D00_RS10335
subclass of: SO_0000673
so part of: E3D00_RS10335
location: complement(6890..7594)
location: region:6890-7594:-1
so has part: feature:6890-7594:-1:exon

WP_141462476.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6890-7594:-1:exon

E3D00_RS10340
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10340
old locus tag: E3D00_10335
so part of: sequence
location: 7751..8446
location: region:7751-8446:1
so has part: feature:7751-8446:1:exon
subclass of: SO_0000010

position:7751:1
position: 7751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8446:1
position: 8446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7751-8446:1:exon

E3D00_RS10340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10340
old locus tag: E3D00_10335
inference: COORDINATES: protein motif:HMM:NF020461.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GAD-like domain-containing protein
translation: MSEIDPRSDIREYIKKYGVLKNQRNVSEEICQKYKGKLPQALIQFWREYGIGTWLDGKFQFCIPSDYADIVDILFEGDPDIRPQRTHIVGFSAFGDLLIWNEDLQTCEVNLPLSTMKIYQWNYNELGSKNYYLKGPIAALSFDHRYNFPTDNKNYTSLFKETLDVIGEITLGECYGFFPALALGGVPALKHIKKVDAKVHFNMLAQMGPLRIRRLNEQEEIEFFRYAGAEQ
SIO_010081: E3D00_RS10340
subclass of: SO_0000673
so part of: E3D00_RS10340
location: 7751..8446
location: region:7751-8446:1
so has part: feature:7751-8446:1:exon

WP_141462477.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7751-8446:1:exon

E3D00_RS10345
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10345
old locus tag: E3D00_10340
so part of: sequence
location: complement(8493..9074)
location: region:8493-9074:-1
so has part: feature:8493-9074:-1:exon
subclass of: SO_0000010

position:8493:-1
position: 8493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9074:-1
position: 9074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8493-9074:-1:exon

E3D00_RS10345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10345
old locus tag: E3D00_10340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010512413.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MQLFDPSGARKYLTESERAGFLKAAEHFPREVRSLCLLLAWSGCRLSEALALTADRVDLVAGVVIFESLKKRQAGIYRAVPVPPVVLETLDLVHGVRQAQKKRDRGQSLRLWPVARMTGWRMVHRVMQEAGLSGPAASPKGLRHAFGVAAVSKGIPLNLIQKWLGHAQLSTTAIYANASGQEEHQIAQKLWGC
SIO_010081: E3D00_RS10345
subclass of: SO_0000673
so part of: E3D00_RS10345
location: complement(8493..9074)
location: region:8493-9074:-1
so has part: feature:8493-9074:-1:exon

WP_141462506.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8493-9074:-1:exon

E3D00_RS10350
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10350
old locus tag: E3D00_10345
so part of: sequence
location: complement(9188..9454)
location: region:9188-9454:-1
so has part: feature:9188-9454:-1:exon
subclass of: SO_0000010

position:9188:-1
position: 9188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9454:-1
position: 9454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9188-9454:-1:exon

E3D00_RS10350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10350
old locus tag: E3D00_10345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010505777.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: WGR domain-containing protein
translation: MTKKPFSLFSDPVRLERIEPSRHCWRFYQLEVGIDLFGHSCLTRSWGRIGTTGQERSEIFEEPNKAQEALQHWVQKKQRRGYQLKDKP
SIO_010081: E3D00_RS10350
subclass of: SO_0000673
so part of: E3D00_RS10350
location: complement(9188..9454)
location: region:9188-9454:-1
so has part: feature:9188-9454:-1:exon

WP_141462478.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9188-9454:-1:exon

E3D00_RS10355
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
gene: vapB
locus tag: E3D00_RS10355
old locus tag: E3D00_10350
so part of: sequence
location: 9863..10087
location: region:9863-10087:1
so has part: feature:9863-10087:1:exon
subclass of: SO_0000010

position:9863:1
position: 9863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10087:1
position: 10087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9863-10087:1:exon

E3D00_RS10355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
gene: vapB
locus tag: E3D00_RS10355
old locus tag: E3D00_10350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012813340.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapB family antitoxin
translation: MLTRTTLFLSNRSQAVRLPKAVSFASDLKEVVIIPDGARRIIAPADAAWDDFFTSPGIELAPRNQPEIQERESF
SIO_010081: E3D00_RS10355
subclass of: SO_0000673
so part of: E3D00_RS10355
location: 9863..10087
location: region:9863-10087:1
so has part: feature:9863-10087:1:exon

WP_141462479.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9863-10087:1:exon

E3D00_RS10360
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10360
old locus tag: E3D00_10355
pseudo: true
so part of: sequence
location: 10087..>10275
location: region:10087-10275:1
so has part: feature:10087-10275:1:exon
subclass of: SO_0000010

position:10275:1
position: 10275
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10087-10275:1:exon

E3D00_RS10360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10360
old locus tag: E3D00_10355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010511772.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: PIN domain-containing protein
SIO_010081: E3D00_RS10360
subclass of: SO_0000673
so part of: E3D00_RS10360
location: 10087..>10275
location: region:10087-10275:1
so has part: feature:10087-10275:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10087-10275:1:exon

E3D00_RS10365
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10365
old locus tag: E3D00_10360
so part of: sequence
location: 10316..11020
location: region:10316-11020:1
so has part: feature:10316-11020:1:exon
subclass of: SO_0000010

position:10316:1
position: 10316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11020:1
position: 11020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10316-11020:1:exon

E3D00_RS10365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10365
old locus tag: E3D00_10360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006699241.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6 family transposase
translation: MSIPPVSYKRHRFPRELIAHAVWLYFRFPLSFRLIEEMLLERGMMVSYETIRRWSLKFGVTYARRLKRKAAKPGDVWHLDEVRIVIGGQVHWLWRAVDQDGYILDEILQTRRNTKAAQRLLTRLLRKQGVRPRRIITDKLKSYGAAKRKLRLSVRHLSHKGLNNRAENSHLPLRKRERVMQKFRSPSGCQRFVSVFSTVRNLFIPPAANTNALTRHSHRIQAFEQWKVAASLAA
SIO_010081: E3D00_RS10365
subclass of: SO_0000673
so part of: E3D00_RS10365
location: 10316..11020
location: region:10316-11020:1
so has part: feature:10316-11020:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10316-11020:1:exon

E3D00_RS10370
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10370
old locus tag: E3D00_10365
so part of: sequence
location: 11319..11987
location: region:11319-11987:1
so has part: feature:11319-11987:1:exon
subclass of: SO_0000010

position:11319:1
position: 11319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11987:1
position: 11987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11319-11987:1:exon

E3D00_RS10370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10370
old locus tag: E3D00_10365
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRLDDYRFGGPGNIGTPDKPSIWLCGIEFGEAQNINSNLAEEEGYSVEKQWGWGYNRKAHKLLCCIEGYPISEAFKFAKERSIFASPDCNYMLTNLFPENCLTVDTWSAEAQERTGFARKIDYINHVRNVCFKTMRTQVKTHKPKLFIGVGVAHERDFVNIVSEPEIKCELTEFKVGRYTKRIRLYRGETPLVVIPHLSSASGLNSNESIEKSGKIIREWLL
SIO_010081: E3D00_RS10370
subclass of: SO_0000673
so part of: E3D00_RS10370
location: 11319..11987
location: region:11319-11987:1
so has part: feature:11319-11987:1:exon

WP_141462481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11319-11987:1:exon

E3D00_RS10375
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10375
old locus tag: E3D00_10370
so part of: sequence
location: 12096..12512
location: region:12096-12512:1
so has part: feature:12096-12512:1:exon
subclass of: SO_0000010

position:12096:1
position: 12096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12512:1
position: 12512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12096-12512:1:exon

E3D00_RS10375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10375
old locus tag: E3D00_10370
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTYHLPGFSFDPPENTQDNSIIALTLSPPNTTPFNVHFIHSPIPLETTLEEFIIKDLTIRKEHDDYILKWKKPYQQTNLSGFILAGFIEETDERRLYILSGNKVLILTAHTQGIFSSEQLHTLNQLVQSLRVNTQNEI
SIO_010081: E3D00_RS10375
subclass of: SO_0000673
so part of: E3D00_RS10375
location: 12096..12512
location: region:12096-12512:1
so has part: feature:12096-12512:1:exon

WP_141462482.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12096-12512:1:exon

E3D00_RS10380
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10380
old locus tag: E3D00_10375
so part of: sequence
location: 12546..12920
location: region:12546-12920:1
so has part: feature:12546-12920:1:exon
subclass of: SO_0000010

position:12546:1
position: 12546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12920:1
position: 12920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12546-12920:1:exon

E3D00_RS10380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10380
old locus tag: E3D00_10375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015334313.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PAAR domain-containing protein
translation: MGKPAARITDMHICPETTGTVPHVGGPIIKGSDNVFINGLPAARIGDNLICHGPMDIIAAGSPTVLINGKPAARMGDQTAHGGVIIKGSSNVIIGDGGNFGNNIIGTPCPKKAASSGAPFYDPS
SIO_010081: E3D00_RS10380
subclass of: SO_0000673
so part of: E3D00_RS10380
location: 12546..12920
location: region:12546-12920:1
so has part: feature:12546-12920:1:exon

WP_181442029.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12546-12920:1:exon

E3D00_RS10385
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10385
old locus tag: E3D00_10380
so part of: sequence
location: 12932..13834
location: region:12932-13834:1
so has part: feature:12932-13834:1:exon
subclass of: SO_0000010

position:12932:1
position: 12932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13834:1
position: 13834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12932-13834:1:exon

E3D00_RS10385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10385
old locus tag: E3D00_10380
inference: COORDINATES: protein motif:HMM:NF024894.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4123 domain-containing protein
translation: MPQDRSIKEIRNKLSQWSQAPIFVALDGALFNNLPRLLDDAGFNALSLFIEQTDPESIRVSPQFVSVPHNRLEEFLNIPKVSKGCVFWNAPNCEPMSFYRHLRSLSMVRIPYKKQTTADAHRTRMVFFRHFDPATVAITLPVLRPEQRARLFGPAQSLLIDAPEGVLEAKKQSNWPPPEKGFLTFDAEQMARISEALALRSKRAIASYLRDTASQKTAHLSDNELLTYISQQEKIAHEYGVTSEAGIGRFCWLQLMSDGKFIQIKTVQIMIRSPENSPDDNLIKIMDQIAYIQSQRESGL
SIO_010081: E3D00_RS10385
subclass of: SO_0000673
so part of: E3D00_RS10385
location: 12932..13834
location: region:12932-13834:1
so has part: feature:12932-13834:1:exon

WP_141462484.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12932-13834:1:exon

E3D00_RS10390
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10390
old locus tag: E3D00_10385
so part of: sequence
location: 13831..14580
location: region:13831-14580:1
so has part: feature:13831-14580:1:exon
subclass of: SO_0000010

position:13831:1
position: 13831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14580:1
position: 14580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13831-14580:1:exon

E3D00_RS10390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10390
old locus tag: E3D00_10385
inference: COORDINATES: protein motif:HMM:NF026942.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polymorphic toxin type 15 domain-containing protein
translation: MSDTTSDTFEGLIFLGIFGIAYETIYAQNLAHTQLKKKADSEPCIECGDIPCFPGGPTPQDRAETQAELNKQEEFINSMSPQEMRKRILEADGRKKQTGSYRPEGDAADRALTRKGYYQQEVDTLRLEKIKRGIPEEQAEEEAKAETDKKIQRLDAAHIIDSIIGGNKEDACFMSMGPRGANRRVGSAWARKGRRQALFNAVKNAIKTGKHRMDIHLEVCEENMGTDPCVDLPDPDIVPDNNSSTSLDK
SIO_010081: E3D00_RS10390
subclass of: SO_0000673
so part of: E3D00_RS10390
location: 13831..14580
location: region:13831-14580:1
so has part: feature:13831-14580:1:exon

WP_141462485.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13831-14580:1:exon

E3D00_RS10395
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10395
old locus tag: E3D00_10390
so part of: sequence
location: 14582..15277
location: region:14582-15277:1
so has part: feature:14582-15277:1:exon
subclass of: SO_0000010

position:14582:1
position: 14582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15277:1
position: 15277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14582-15277:1:exon

E3D00_RS10395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10395
old locus tag: E3D00_10390
inference: COORDINATES: protein motif:HMM:NF020461.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GAD-like domain-containing protein
translation: MTKLSSGFQYLIKKFGPPQNGEPVPKEVREAYASRVPQTMLDFWEEYGTGLWLDGYFQLCRPDQYQSLVDFILQGDPDFPPEKSVLIGFSAFGTLLIWNNKNYFLKISLYNKIAYSFHLSPDFPILPPDKDISAVLISIDSEVFDYLERTKEAKPLFKRALKKLGPLAYGECYGFIPALELGGREVLEEVHKRPARPYFQMVADLDPIALRYNDLENHQVRFVRYLGEPAA
SIO_010081: E3D00_RS10395
subclass of: SO_0000673
so part of: E3D00_RS10395
location: 14582..15277
location: region:14582-15277:1
so has part: feature:14582-15277:1:exon

WP_141462486.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14582-15277:1:exon

E3D00_RS10400
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10400
old locus tag: E3D00_10395
pseudo: true
so part of: sequence
location: complement(15426..>15770)
location: region:15426-15770:-1
so has part: feature:15426-15770:-1:exon
subclass of: SO_0000010

position:15426:-1
position: 15426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15770:-1
position: 15770
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15426-15770:-1:exon

E3D00_RS10400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10400
old locus tag: E3D00_10395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DDE-type integrase/transposase/recombinase
SIO_010081: E3D00_RS10400
subclass of: SO_0000673
so part of: E3D00_RS10400
location: complement(15426..>15770)
location: region:15426-15770:-1
so has part: feature:15426-15770:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15426-15770:-1:exon

E3D00_RS10405
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10405
old locus tag: E3D00_10400
so part of: sequence
location: 16182..16673
location: region:16182-16673:1
so has part: feature:16182-16673:1:exon
subclass of: SO_0000010

position:16182:1
position: 16182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16673:1
position: 16673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16182-16673:1:exon

E3D00_RS10405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10405
old locus tag: E3D00_10400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010511755.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MQGIFNAADIGSQVREKRLAQGMNQTVLAQKLGCSRKWVSDIEQGNETAEIGRVLRALAMLGIKIFVGQSEAVESKEISPQYNEILAHRDQFGEVPQAMERIAKLGLVGNPMKENLERTIGPKLLPVQLPEAFKHEGQPSAATTEEVSATKPQLPKPGDGEDD
SIO_010081: E3D00_RS10405
subclass of: SO_0000673
so part of: E3D00_RS10405
location: 16182..16673
location: region:16182-16673:1
so has part: feature:16182-16673:1:exon

WP_141462487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16182-16673:1:exon

E3D00_RS10415
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10415
old locus tag: E3D00_10410
pseudo: true
so part of: sequence
location: <16976..17608
location: region:16976-17608:1
so has part: feature:16976-17608:1:exon
subclass of: SO_0000010

position:16976:1
position: 16976
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:17608:1
position: 17608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16976-17608:1:exon

E3D00_RS10415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10415
old locus tag: E3D00_10410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: E3D00_RS10415
subclass of: SO_0000673
so part of: E3D00_RS10415
location: <16976..17608
location: region:16976-17608:1
so has part: feature:16976-17608:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16976-17608:1:exon

E3D00_RS10420
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10420
old locus tag: E3D00_10415
so part of: sequence
location: 17759..18391
location: region:17759-18391:1
so has part: feature:17759-18391:1:exon
subclass of: SO_0000010

position:17759:1
position: 17759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18391:1
position: 18391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17759-18391:1:exon

E3D00_RS10420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10420
old locus tag: E3D00_10415
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDIPIAFPDTEMGFDASSIDADKFSEKFIEEFKNELTTRMSEDKRKRVPIVTEYVIKSAVSAANTAVFDQTWQFNYNINIEVSAHKERKLLEEHIESDKNLENIKITSCLGGDLDVQIRIGNKVLVNLESELGGARQRAEDLAKLTSHTHPPIVSIMVSRGKSRKEVESIKKNISNKSNENTGDLISITIYWKNNSRIKEAEIIIDKVR
SIO_010081: E3D00_RS10420
subclass of: SO_0000673
so part of: E3D00_RS10420
location: 17759..18391
location: region:17759-18391:1
so has part: feature:17759-18391:1:exon

WP_141462488.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17759-18391:1:exon

E3D00_RS10425
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10425
old locus tag: E3D00_10420
so part of: sequence
location: 18477..18668
location: region:18477-18668:1
so has part: feature:18477-18668:1:exon
subclass of: SO_0000010

position:18477:1
position: 18477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18668:1
position: 18668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18477-18668:1:exon

E3D00_RS10425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10425
old locus tag: E3D00_10420
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLGLLLALLLPFQLSGLPGFLGRPDVLLASDLSLTHQLLPLVLKTPVVHPLFDLVPWCCHVNL
SIO_010081: E3D00_RS10425
subclass of: SO_0000673
so part of: E3D00_RS10425
location: 18477..18668
location: region:18477-18668:1
so has part: feature:18477-18668:1:exon

WP_141462489.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18477-18668:1:exon

E3D00_RS10430
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10430
old locus tag: E3D00_10425
so part of: sequence
location: complement(18697..19401)
location: region:18697-19401:-1
so has part: feature:18697-19401:-1:exon
subclass of: SO_0000010

position:18697:-1
position: 18697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19401:-1
position: 19401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18697-19401:-1:exon

E3D00_RS10430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10430
old locus tag: E3D00_10425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011654560.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6 family transposase
translation: MSIPPVSYKRHRFPRELIAHAVWLYFRFPLSFRLIEEMLLERGMMVSYETIRRWSLKFGVTYARRLKRKAAKPGDVWHLDEVRIVIGGQVHWLWRAVDQDGYILDEILQTRRNTKAAQRLLTRLLRKQGVRPRRIITDKLKSYGAAKRKLRLSVRHLSHKGLNNRAENSHLPLRKRERVMQKFRSPSGCQRFLTVFSAVRNLFVPPTTNTNALTRHNHLIQAFAQWNVVTSLAA
SIO_010081: E3D00_RS10430
subclass of: SO_0000673
so part of: E3D00_RS10430
location: complement(18697..19401)
location: region:18697-19401:-1
so has part: feature:18697-19401:-1:exon

WP_141462490.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18697-19401:-1:exon

E3D00_RS10435
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10435
old locus tag: E3D00_10430
so part of: sequence
location: complement(19815..20387)
location: region:19815-20387:-1
so has part: feature:19815-20387:-1:exon
subclass of: SO_0000010

position:19815:-1
position: 19815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20387:-1
position: 20387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19815-20387:-1:exon

E3D00_RS10435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10435
old locus tag: E3D00_10430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603269.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MPRTFAYVRVSTVGQTTENQIQDIKAAGFHVEPHRIVTETISGSTPIARRRGFSRLMDRLEAGDILIVTKLDRLGRDAIDVSTTVKALTEIGVRVYCLALGGADLTSSSGTMTMQVLNAVAQFERDLLIERTQSGLKRAKAEGKTLGRPSVLTEKQKKDVRAELAKGSTISAIARKFLTSRQTIMRVRDE
SIO_010081: E3D00_RS10435
subclass of: SO_0000673
so part of: E3D00_RS10435
location: complement(19815..20387)
location: region:19815-20387:-1
so has part: feature:19815-20387:-1:exon

WP_141462491.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19815-20387:-1:exon

E3D00_RS10440
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10440
old locus tag: E3D00_10435
so part of: sequence
location: complement(20504..20803)
location: region:20504-20803:-1
so has part: feature:20504-20803:-1:exon
subclass of: SO_0000010

position:20504:-1
position: 20504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20803:-1
position: 20803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20504-20803:-1:exon

E3D00_RS10440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10440
old locus tag: E3D00_10435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009045810.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative addiction module antidote protein
translation: MTEKLTNYDPASALVDDEEIAAFMADAFETADAAYIAKALGVVARAKGMSEIARQTGLSREQLYRSFSERGNPTLKTTLAVMRALGVDITAKVHQDAAV
SIO_010081: E3D00_RS10440
subclass of: SO_0000673
so part of: E3D00_RS10440
location: complement(20504..20803)
location: region:20504-20803:-1
so has part: feature:20504-20803:-1:exon

WP_141462493.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20504-20803:-1:exon

E3D00_RS10445
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10445
old locus tag: E3D00_10440
so part of: sequence
location: complement(20796..21101)
location: region:20796-21101:-1
so has part: feature:20796-21101:-1:exon
subclass of: SO_0000010

position:20796:-1
position: 20796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21101:-1
position: 21101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20796-21101:-1:exon

E3D00_RS10445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10445
old locus tag: E3D00_10440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003518908.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MIELKQTSTFTKWESRLRDKRAKTMIAARLMRLAAGLPGDVKSVGEGVSELRIHYGPGYRVYFQQRGSVVIILLCGGDKGSQSKDIMTAKHLARKWSERND
SIO_010081: E3D00_RS10445
subclass of: SO_0000673
so part of: E3D00_RS10445
location: complement(20796..21101)
location: region:20796-21101:-1
so has part: feature:20796-21101:-1:exon

WP_141462495.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20796-21101:-1:exon

E3D00_RS10450
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10450
old locus tag: E3D00_10445
pseudo: true
so part of: sequence
location: complement(21419..>21875)
location: region:21419-21875:-1
so has part: feature:21419-21875:-1:exon
subclass of: SO_0000010

position:21419:-1
position: 21419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21875:-1
position: 21875
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21419-21875:-1:exon

E3D00_RS10450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10450
old locus tag: E3D00_10445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DDE-type integrase/transposase/recombinase
SIO_010081: E3D00_RS10450
subclass of: SO_0000673
so part of: E3D00_RS10450
location: complement(21419..>21875)
location: region:21419-21875:-1
so has part: feature:21419-21875:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21419-21875:-1:exon

E3D00_RS10455
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10455
old locus tag: E3D00_10450
so part of: sequence
location: complement(22421..23677)
location: region:22421-23677:-1
so has part: feature:22421-23677:-1:exon
subclass of: SO_0000010

position:22421:-1
position: 22421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23677:-1
position: 23677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22421-23677:-1:exon

E3D00_RS10455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10455
old locus tag: E3D00_10450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008851267.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Y-family DNA polymerase
translation: MAVFGLIDGNAFYCSCQRAFEPRLKQRPVVVLSNNDGCAIARTQEAKSLGIKMGEPWHLARKHPKNRDVIWYSSNYALYADMSQRMYEVLSARVPSVEAYSIDEMFLDLSNLPYDLNDFCKGLRDDIRHHVKIPTCIGWGPTKTIAKLANALAKEDPQYNGLCDLTDPDQRKKWYKRLSIDEVWGIGRKVSEKLKRQGVTTIADFVALDPHHTRSLLTVVGARVQAELKGQSCLGLSDVLQPRKGIVSSRSFGVLLTEWEDIREALALFAHRAAETLRREDLQAAHLSVMMRTNPHNGDPWYAPSASLSIEPTSDTRDLIRIATSLAQPLWRSGFRYAKAGISLNDLRPIHQQPSLFASRSPEKSLALMEAMDAINARYGRDTLRPASTKIQQGWRPRAGMLSPRYTTCLDEILRVQT
SIO_010081: E3D00_RS10455
subclass of: SO_0000673
so part of: E3D00_RS10455
location: complement(22421..23677)
location: region:22421-23677:-1
so has part: feature:22421-23677:-1:exon

WP_141462497.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22421-23677:-1:exon

E3D00_RS10460
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10460
old locus tag: E3D00_10455
so part of: sequence
location: complement(23677..24057)
location: region:23677-24057:-1
so has part: feature:23677-24057:-1:exon
subclass of: SO_0000010

position:24057:-1
position: 24057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23677-24057:-1:exon

E3D00_RS10460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10460
old locus tag: E3D00_10455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011253870.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S24 family peptidase
translation: MTYRGDRTSGFASPASQHVEQSLDLIQDVLSLQQPSRYPVRIEGDGLVERGIHTGDILIVDAAKPATLGCVVIASLEDDFKACEYTLQKGQPGISFLTASGRQFLSLEENNVSIWAVACGLVRATV
SIO_010081: E3D00_RS10460
subclass of: SO_0000673
so part of: E3D00_RS10460
location: complement(23677..24057)
location: region:23677-24057:-1
so has part: feature:23677-24057:-1:exon

WP_141462498.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23677-24057:-1:exon

E3D00_RS10465
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10465
old locus tag: E3D00_10460
pseudo: true
so part of: sequence
location: 24180..>24643
location: region:24180-24643:1
so has part: feature:24180-24643:1:exon
subclass of: SO_0000010

position:24180:1
position: 24180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24643:1
position: 24643
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24180-24643:1:exon

E3D00_RS10465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10465
old locus tag: E3D00_10460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006939175.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: E3D00_RS10465
subclass of: SO_0000673
so part of: E3D00_RS10465
location: 24180..>24643
location: region:24180-24643:1
so has part: feature:24180-24643:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24180-24643:1:exon

E3D00_RS10470
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10470
old locus tag: E3D00_10465
so part of: sequence
location: complement(25165..25533)
location: region:25165-25533:-1
so has part: feature:25165-25533:-1:exon
subclass of: SO_0000010

position:25165:-1
position: 25165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25533:-1
position: 25533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25165-25533:-1:exon

E3D00_RS10470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10470
old locus tag: E3D00_10465
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIIGFSRYGTGAGRGPVQYLLDPHRKGREINKPVLLRGQPDETRELIDSLTFKHKYTSGVLSFAPGETITPKMEQDIINRFEQFAFAGLEPDQGKLKQLVRPVRGFKTLKIALSIKVSEWNN
SIO_010081: E3D00_RS10470
subclass of: SO_0000673
so part of: E3D00_RS10470
location: complement(25165..25533)
location: region:25165-25533:-1
so has part: feature:25165-25533:-1:exon

WP_141462500.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25165-25533:-1:exon

E3D00_RS10695
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10695
so part of: sequence
location: complement(25530..25664)
location: region:25530-25664:-1
so has part: feature:25530-25664:-1:exon
subclass of: SO_0000010

position:25530:-1
position: 25530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25664:-1
position: 25664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25530-25664:-1:exon

E3D00_RS10695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10695
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLNRINANLNMIDRWVNTYQDAADTVQVVSHLIAIQRSITEIAE
SIO_010081: E3D00_RS10695
subclass of: SO_0000673
so part of: E3D00_RS10695
location: complement(25530..25664)
location: region:25530-25664:-1
so has part: feature:25530-25664:-1:exon

WP_281279663.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25530-25664:-1:exon

E3D00_RS10575
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10575
so part of: sequence
location: complement(25695..25835)
location: region:25695-25835:-1
so has part: feature:25695-25835:-1:exon
subclass of: SO_0000010

position:25695:-1
position: 25695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25835:-1
position: 25835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25695-25835:-1:exon

E3D00_RS10575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10575
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKEIRTHMLRVRFSDDEWAALQEQANAAGLSMSALVRDHLGKVRI
SIO_010081: E3D00_RS10575
subclass of: SO_0000673
so part of: E3D00_RS10575
location: complement(25695..25835)
location: region:25695-25835:-1
so has part: feature:25695-25835:-1:exon

WP_181442025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25695-25835:-1:exon

E3D00_RS10475
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10475
old locus tag: E3D00_10470
so part of: sequence
location: 25954..27129
location: region:25954-27129:1
so has part: feature:25954-27129:1:exon
subclass of: SO_0000010

position:25954:1
position: 25954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27129:1
position: 27129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25954-27129:1:exon

E3D00_RS10475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10475
old locus tag: E3D00_10470
inference: COORDINATES: protein motif:HMM:NF019843.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SEL1-like repeat protein
translation: MKKIIIGLIIFSNFVSLKAYGASGSNSQDVLKNNEKSIEWFEKYAPTKNADDQFLLGLAYFIGQGVPQNDEKAVEWFEKSAAQGNADAQVRLGYCYFNGRGVPENYEKAVEWYQKSADQGNAEAQFRLGLAYAWGRGVPENYEKAVEWYQKSADQGNSDAQWNLGGAYVLGQGVPRNDEKAVEWFEKSADQGNAYAQVRLGLAYSFGQGVPRNDEKAVEWYQKSAAQGNPDAQWRLGLAYFLGQGVPRNDEKAVEWYQKSAAQGNPDAQWRLGLAYFNGQGVPRNDEKAVEWFEKSAVQGNAYAQWRLGLAYFLGQGAPRNDEKAVEWFEKSAVQGNANAQWRLGYCYFLGRGVPENYEKAVEWFEKSAAQGNADAKKILKILHVKVQYSR
SIO_010081: E3D00_RS10475
subclass of: SO_0000673
so part of: E3D00_RS10475
location: 25954..27129
location: region:25954-27129:1
so has part: feature:25954-27129:1:exon

WP_141462502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25954-27129:1:exon

E3D00_RS10580
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10580
so part of: sequence
location: 27389..27508
location: region:27389-27508:1
so has part: feature:27389-27508:1:exon
subclass of: SO_0000010

position:27389:1
position: 27389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27508:1
position: 27508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27389-27508:1:exon

E3D00_RS10580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10580
inference: COORDINATES: protein motif:HMM:NF025107.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSFAGKQGCVPSHASLAAEAGVCERTVRNALREARLRGW
SIO_010081: E3D00_RS10580
subclass of: SO_0000673
so part of: E3D00_RS10580
location: 27389..27508
location: region:27389-27508:1
so has part: feature:27389-27508:1:exon

WP_181442026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27389-27508:1:exon

E3D00_RS10485
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10485
old locus tag: E3D00_10480
so part of: sequence
location: 27779..28978
location: region:27779-28978:1
so has part: feature:27779-28978:1:exon
subclass of: SO_0000010

position:27779:1
position: 27779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28978:1
position: 28978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27779-28978:1:exon

E3D00_RS10485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10485
old locus tag: E3D00_10480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007684500.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MDAIVSQIGDLAEAGERMIERLRRKAFLPDSRKGLNIRVGIAEAAQLLCCSTNRIRMAEDDGRLPSAPSSKNGRRLGYTIEELLHMRAVLNASPQRTPLDVPAIIAVQNFKGGVGKSTVTTHLAHYFAIQGYRVLVVDCDSQATTTTLFGFNPHFNITREETLYPYLSIDPTESDLAYAVKSTPWPNVDLIPSNLELFDVEYELAAAGSDGQSVLTARFRKLKEGLNVLANQYDVVLLDPPPALGTISLAVMQAANALLVPLAATTPDFCSTVQFLSMMDQVLQQLASAGIELDYNFVRLICSKFDSNDPSHAMIRSIMEQTFGAALLPVPILDSAEVSHAALRMMTVYELEKPIGTPKTHKRCRANLDEALGQIEQLVRQSWGRVTPAKEDEVLHASI
SIO_010081: E3D00_RS10485
subclass of: SO_0000673
so part of: E3D00_RS10485
location: 27779..28978
location: region:27779-28978:1
so has part: feature:27779-28978:1:exon

WP_141462504.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27779-28978:1:exon

E3D00_RS10490
type: Gene
subclass of: SO_0000704
RO_0002162: 1293412
locus tag: E3D00_RS10490
old locus tag: E3D00_10485
so part of: sequence
location: 29027..30058
location: region:29027-30058:1
so has part: feature:29027-30058:1:exon
subclass of: SO_0000010

position:29027:1
position: 29027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30058:1
position: 30058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29027-30058:1:exon

E3D00_RS10490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1293412
locus tag: E3D00_RS10490
old locus tag: E3D00_10485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013831354.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MARKPNPYLASLLHDDDEPSEIQSRSERVRPSALLRRETALARVQSGEVKQVTQLHLDPKRVRIWPGNARIYAQLTEERCSDLIDSLIAENGQKVPAIVRRVTDDPTYDYEVIAGTRRHWSISWLRQHSYPDMQFVAQVMTLDDEAAFRLADIENRARQDISDIERARNYAQAVKQYYEGKQKRMAERLRVSEGWLSKMLQVARIPDNILQAFSSLETIQLKPAYALARELDDTHALKRVTAKARVIAREQQELYARGELPIPSSDVLRRLMDAATSPSQKTLVAPIVIQSRLGRPALSVQSTNRQGVTIRLHAGSGATNEELLQALNKALSELDATGRGIHR
SIO_010081: E3D00_RS10490
subclass of: SO_0000673
so part of: E3D00_RS10490
location: 29027..30058
location: region:29027-30058:1
so has part: feature:29027-30058:1:exon

WP_141462505.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29027-30058:1:exon