Geobacillus subterraneus strain CPW16 plasmid pBsrF12, complete sequence.
type: Entry
definition: Geobacillus subterraneus strain CPW16 plasmid pBsrF12, complete sequence.
sequence version: NZ_CP051163.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP051163.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14549045
keyword: RefSeq
source: Geobacillus subterraneus
organism: Geobacillus subterraneus
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Geobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP051163.1.\nBacteria and source DNA available from NEB collection 695.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 01-DEC-2017\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: BsrF_new_BP9_50_HGAP3_1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 145.47x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 10:59:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,650\nCDSs (total) :: 3,516\nGenes (coding) :: 3,375\nCDSs (with protein) :: 3,375\nGenes (RNA) :: 134\nrRNAs :: 9, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 10, 10 (5S, 16S, 23S)\ntRNAs :: 100\nncRNAs :: 5\nPseudo Genes (total) :: 141\nCDSs (without protein) :: 141\nPseudo Genes (ambiguous residues) :: 0 of 141\nPseudo Genes (frameshifted) :: 41 of 141\nPseudo Genes (incomplete) :: 104 of 141\nPseudo Genes (internal stop) :: 18 of 141\nPseudo Genes (multiple problems) :: 21 of 141\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 11424
topology: circular
so has quality: SO_0000988
location: 1..11424
location: region:1-11424:1
RO_0002162: 129338

NZ_CP051163
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14549045
type: BioSample
SIO_000068: biosample

1
title: Genome-Wide Identification of 5-Methylcytosine Sites in Bacterial Genomes By High-Throughput Sequencing of MspJI Restriction Fragments
author: Wu, V.
journal: Unpublished

2
title: Direct Submission
author: Fomenkov, A.
author: Anton, B.P.
author: Roberts, R.J.
journal: Submitted (07-APR-2020) Genome Biology, NEB, 240 County Rd, Ipswich, MA 01938, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11424:1
position: 11424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11424:1:source
so part of: sequence
organism: Geobacillus subterraneus
mol type: genomic DNA
strain: CPW16
plasmid: pBsrF12

129338
type: Taxonomy
SIO_000068: taxonomy

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 129338
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF02541
inference: COORDINATES: profile:INFERNAL:1.1.4
note: mutual gap in cmsearch alignment for this rRNA model is longer than 100; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 1..2270
location: region:1-2270:1
so has part: feature:1-2270:1:region

position:2270:1
position: 2270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-2270:1:region

HF500_RS17960
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS17960
so part of: sequence
location: complement(1772..4281)
location: region:1772-4281:-1
so has part: feature:1772-4281:-1:exon
subclass of: SO_0000573

position:1772:-1
position: 1772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4281:-1
position: 4281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1772-4281:-1:exon

HF500_RS17960
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 129338
locus tag: HF500_RS17960
product: 23S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF02541
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: HF500_RS17960
subclass of: SO_0000673
so part of: HF500_RS17960
location: complement(1772..4281)
location: region:1772-4281:-1
so has part: feature:1772-4281:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1772-4281:-1:exon

HF500_RS17965
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS17965
old locus tag: HF500_17960
so part of: sequence
location: complement(4741..6298)
location: region:4741-6298:-1
so has part: feature:4741-6298:-1:exon
subclass of: SO_0000573

position:4741:-1
position: 4741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6298:-1
position: 6298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4741-6298:-1:exon

HF500_RS17965
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 129338
locus tag: HF500_RS17965
old locus tag: HF500_17960
product: 16S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00177
inference: COORDINATES: profile:INFERNAL:1.1.4
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: HF500_RS17965
subclass of: SO_0000673
so part of: HF500_RS17965
location: complement(4741..6298)
location: region:4741-6298:-1
so has part: feature:4741-6298:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4741-6298:-1:exon

HF500_RS17970
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS17970
old locus tag: HF500_17965
so part of: sequence
location: complement(6513..6585)
location: region:6513-6585:-1
so has part: feature:6513-6585:-1:exon
subclass of: SO_0000663

position:6513:-1
position: 6513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6585:-1
position: 6585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6513-6585:-1:exon

HF500_RS17970
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 129338
locus tag: HF500_RS17970
old locus tag: HF500_17965
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(6550..6552),aa:Ala,seq:tgc)
SIO_010081: HF500_RS17970
subclass of: SO_0000673
so part of: HF500_RS17970
location: complement(6513..6585)
location: region:6513-6585:-1
so has part: feature:6513-6585:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6513-6585:-1:exon

HF500_RS17975
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS17975
old locus tag: HF500_17970
so part of: sequence
location: complement(6598..6671)
location: region:6598-6671:-1
so has part: feature:6598-6671:-1:exon
subclass of: SO_0000663

position:6598:-1
position: 6598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6671:-1
position: 6671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6598-6671:-1:exon

HF500_RS17975
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 129338
locus tag: HF500_RS17975
old locus tag: HF500_17970
product: tRNA-Pro
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(6635..6637),aa:Pro,seq:tgg)
SIO_010081: HF500_RS17975
subclass of: SO_0000673
so part of: HF500_RS17975
location: complement(6598..6671)
location: region:6598-6671:-1
so has part: feature:6598-6671:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6598-6671:-1:exon

HF500_RS17980
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS17980
old locus tag: HF500_17975
so part of: sequence
location: complement(6676..6749)
location: region:6676-6749:-1
so has part: feature:6676-6749:-1:exon
subclass of: SO_0000663

position:6676:-1
position: 6676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6749:-1
position: 6749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6676-6749:-1:exon

HF500_RS17980
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 129338
locus tag: HF500_RS17980
old locus tag: HF500_17975
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(6713..6715),aa:Arg,seq:acg)
SIO_010081: HF500_RS17980
subclass of: SO_0000673
so part of: HF500_RS17980
location: complement(6676..6749)
location: region:6676-6749:-1
so has part: feature:6676-6749:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6676-6749:-1:exon

HF500_RS17985
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS17985
old locus tag: HF500_17980
so part of: sequence
location: complement(6752..6834)
location: region:6752-6834:-1
so has part: feature:6752-6834:-1:exon
subclass of: SO_0000663

position:6752:-1
position: 6752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6834:-1
position: 6834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6752-6834:-1:exon

HF500_RS17985
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 129338
locus tag: HF500_RS17985
old locus tag: HF500_17980
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(6798..6800),aa:Leu,seq:taa)
SIO_010081: HF500_RS17985
subclass of: SO_0000673
so part of: HF500_RS17985
location: complement(6752..6834)
location: region:6752-6834:-1
so has part: feature:6752-6834:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6752-6834:-1:exon

HF500_RS17990
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS17990
old locus tag: HF500_17985
so part of: sequence
location: complement(6847..6920)
location: region:6847-6920:-1
so has part: feature:6847-6920:-1:exon
subclass of: SO_0000663

position:6847:-1
position: 6847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6920:-1
position: 6920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6847-6920:-1:exon

HF500_RS17990
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 129338
locus tag: HF500_RS17990
old locus tag: HF500_17985
product: tRNA-Gly
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(6886..6888),aa:Gly,seq:gcc)
SIO_010081: HF500_RS17990
subclass of: SO_0000673
so part of: HF500_RS17990
location: complement(6847..6920)
location: region:6847-6920:-1
so has part: feature:6847-6920:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6847-6920:-1:exon

HF500_RS17995
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS17995
old locus tag: HF500_17990
so part of: sequence
location: complement(6932..7015)
location: region:6932-7015:-1
so has part: feature:6932-7015:-1:exon
subclass of: SO_0000663

position:6932:-1
position: 6932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7015:-1
position: 7015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6932-7015:-1:exon

HF500_RS17995
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 129338
locus tag: HF500_RS17995
old locus tag: HF500_17990
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(6979..6981),aa:Leu,seq:cag)
SIO_010081: HF500_RS17995
subclass of: SO_0000673
so part of: HF500_RS17995
location: complement(6932..7015)
location: region:6932-7015:-1
so has part: feature:6932-7015:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6932-7015:-1:exon

HF500_RS18000
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS18000
old locus tag: HF500_17995
so part of: sequence
location: complement(7026..7101)
location: region:7026-7101:-1
so has part: feature:7026-7101:-1:exon
subclass of: SO_0000663

position:7026:-1
position: 7026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7101:-1
position: 7101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7026-7101:-1:exon

HF500_RS18000
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 129338
locus tag: HF500_RS18000
old locus tag: HF500_17995
product: tRNA-Lys
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7066..7068),aa:Lys,seq:ttt)
SIO_010081: HF500_RS18000
subclass of: SO_0000673
so part of: HF500_RS18000
location: complement(7026..7101)
location: region:7026-7101:-1
so has part: feature:7026-7101:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7026-7101:-1:exon

HF500_RS18005
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS18005
old locus tag: HF500_18000
so part of: sequence
location: complement(7286..7360)
location: region:7286-7360:-1
so has part: feature:7286-7360:-1:exon
subclass of: SO_0000663

position:7286:-1
position: 7286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7360:-1
position: 7360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7286-7360:-1:exon

HF500_RS18005
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 129338
locus tag: HF500_RS18005
old locus tag: HF500_18000
product: tRNA-Gln
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7326..7328),aa:Gln,seq:ttg)
SIO_010081: HF500_RS18005
subclass of: SO_0000673
so part of: HF500_RS18005
location: complement(7286..7360)
location: region:7286-7360:-1
so has part: feature:7286-7360:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7286-7360:-1:exon

HF500_RS18010
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS18010
old locus tag: HF500_18005
so part of: sequence
location: complement(7374..7449)
location: region:7374-7449:-1
so has part: feature:7374-7449:-1:exon
subclass of: SO_0000663

position:7374:-1
position: 7374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7449:-1
position: 7449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7374-7449:-1:exon

HF500_RS18010
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 129338
locus tag: HF500_RS18010
old locus tag: HF500_18005
product: tRNA-Asp
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7414..7416),aa:Asp,seq:gtc)
SIO_010081: HF500_RS18010
subclass of: SO_0000673
so part of: HF500_RS18010
location: complement(7374..7449)
location: region:7374-7449:-1
so has part: feature:7374-7449:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7374-7449:-1:exon

HF500_RS18015
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS18015
old locus tag: HF500_18010
so part of: sequence
location: complement(7481..7552)
location: region:7481-7552:-1
so has part: feature:7481-7552:-1:exon
subclass of: SO_0000663

position:7481:-1
position: 7481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7552:-1
position: 7552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7481-7552:-1:exon

HF500_RS18015
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 129338
locus tag: HF500_RS18015
old locus tag: HF500_18010
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7517..7519),aa:Glu,seq:ttc)
SIO_010081: HF500_RS18015
subclass of: SO_0000673
so part of: HF500_RS18015
location: complement(7481..7552)
location: region:7481-7552:-1
so has part: feature:7481-7552:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7481-7552:-1:exon

HF500_RS18020
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS18020
old locus tag: HF500_18015
so part of: sequence
location: complement(7569..7661)
location: region:7569-7661:-1
so has part: feature:7569-7661:-1:exon
subclass of: SO_0000663

position:7569:-1
position: 7569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7661:-1
position: 7661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7569-7661:-1:exon

HF500_RS18020
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 129338
locus tag: HF500_RS18020
old locus tag: HF500_18015
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7625..7627),aa:Ser,seq:gct)
SIO_010081: HF500_RS18020
subclass of: SO_0000673
so part of: HF500_RS18020
location: complement(7569..7661)
location: region:7569-7661:-1
so has part: feature:7569-7661:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7569-7661:-1:exon

HF500_RS18025
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS18025
old locus tag: HF500_18020
so part of: sequence
location: complement(7668..7742)
location: region:7668-7742:-1
so has part: feature:7668-7742:-1:exon
subclass of: SO_0000663

position:7668:-1
position: 7668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7742:-1
position: 7742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7668-7742:-1:exon

HF500_RS18025
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 129338
locus tag: HF500_RS18025
old locus tag: HF500_18020
product: tRNA-Asn
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7708..7710),aa:Asn,seq:gtt)
SIO_010081: HF500_RS18025
subclass of: SO_0000673
so part of: HF500_RS18025
location: complement(7668..7742)
location: region:7668-7742:-1
so has part: feature:7668-7742:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7668-7742:-1:exon

HF500_RS18030
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS18030
old locus tag: HF500_18025
so part of: sequence
location: complement(7977..8432)
location: region:7977-8432:-1
so has part: feature:7977-8432:-1:exon
subclass of: SO_0000010

position:7977:-1
position: 7977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8432:-1
position: 8432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7977-8432:-1:exon

HF500_RS18030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 129338
locus tag: HF500_RS18030
old locus tag: HF500_18025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012748967.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SprT family protein
translation: MDQKQLQALVEQISISTFGKPFRHTASFNSRLRTVGGRYVLQTHNIELNKKHYDRFGEEELIAIIKHELCHYHLHLEGKGYRHRDRDFRELLRKVGAPRYCRPLEQKTKTPKAIHTYICTSCGLTYKRKKRMNTDRYVCGHCHGRLKLSSS
SIO_010081: HF500_RS18030
subclass of: SO_0000673
so part of: HF500_RS18030
location: complement(7977..8432)
location: region:7977-8432:-1
so has part: feature:7977-8432:-1:exon

WP_063166920.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7977-8432:-1:exon

HF500_RS18035
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
gene: cmpA
locus tag: HF500_RS18035
old locus tag: HF500_18030
so part of: sequence
location: 8524..8637
location: region:8524-8637:1
so has part: feature:8524-8637:1:exon
subclass of: SO_0000010

position:8524:1
position: 8524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8637:1
position: 8637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8524-8637:1:exon

HF500_RS18035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 129338
gene: cmpA
locus tag: HF500_RS18035
old locus tag: HF500_18030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012748966.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cortex morphogenetic protein CmpA
translation: MPTWLKNQMRRAYYEKNRDQIKLLNQCWFFYRRKHCS
SIO_010081: HF500_RS18035
subclass of: SO_0000673
so part of: HF500_RS18035
location: 8524..8637
location: region:8524-8637:1
so has part: feature:8524-8637:1:exon

WP_089135018.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8524-8637:1:exon

HF500_RS18040
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
gene: hisD
locus tag: HF500_RS18040
old locus tag: HF500_18035
so part of: sequence
location: complement(8789..10069)
location: region:8789-10069:-1
so has part: feature:8789-10069:-1:exon
subclass of: SO_0000010

position:8789:-1
position: 8789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10069:-1
position: 10069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8789-10069:-1:exon

HF500_RS18040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 129338
gene: hisD
locus tag: HF500_RS18040
old locus tag: HF500_18035
EC number: 1.1.1.23
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018628639.1
GO function: GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO process: GO:0000105 - histidine biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: histidinol dehydrogenase
translation: MTMFLKQGKPQEEIAQHDAQVAETVRQIIKKIEFEGDAAVRELSLQFDNWSPLSFRLTEEQILDIISTVPKQTIEDIKFAQSNIRRFAEEQRKALKDIEVETLPGVILGHKNIPVNSVGCYIPGGRYPMVASAHMSVLTAKVAGVKRVIACTPPIRGEIPAATVAAMHLAGADEIYILGGVQAMAAMAIGTETIEPVDMLVGPGNAYVAEAKRQLYGRVGIDLFAGPTETLIIADETADAEMVATDLLGQAEHGPTSPCVLITTSEKLARETLEEVERQLAVLPTADVASVAWRDYGTVIVVEDEEEALREADKLAFEHVQVLTKNPDYFLENLTNYGSLFLGPETNVAYGDKVIGTNHTLPTKKAARYTGGLWVGKFLKTCTYQKVSKEASAFIGEYAVRLCEIENFAGHAQQARLRVERYGKSQ
SIO_010081: HF500_RS18040
subclass of: SO_0000673
so part of: HF500_RS18040
location: complement(8789..10069)
location: region:8789-10069:-1
so has part: feature:8789-10069:-1:exon

WP_063166921.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8789-10069:-1:exon

HF500_RS18045
type: Gene
subclass of: SO_0000704
RO_0002162: 129338
locus tag: HF500_RS18045
old locus tag: HF500_18040
so part of: sequence
location: complement(10242..11219)
location: region:10242-11219:-1
so has part: feature:10242-11219:-1:exon
subclass of: SO_0000010

position:10242:-1
position: 10242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11219:-1
position: 11219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10242-11219:-1:exon

HF500_RS18045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 129338
locus tag: HF500_RS18045
old locus tag: HF500_18040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013082569.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LacI family DNA-binding transcriptional regulator
translation: MEVAKKAGVSQSTVSRVFTPGSSVSPKTRKRVLEAARELGYRPNALARGLIMNKTNIIGLAMRDIQNPFYPEILEKFTKALRDNGYHVLFVHTENDEINQDEISEFLEYNVEGVIVTDATLSPNIIASLSSNGIPVILFNRRMDGLPCHSVSCDNYTAGKKIGEYLYELGYRRMAYIRGRKNTSTNDDRERGFCEALMGRGAELCIEDGEFTYEGGYNAALRLLGKRERPEVIFGANDITALGVIDAARAIGLSIPDDVAVIGFDDITMASWPSYGLTTWRQPVDEMIEWTLAKLFEEIDGGDGKPSSILFPGILVERGSVKKRS
SIO_010081: HF500_RS18045
subclass of: SO_0000673
so part of: HF500_RS18045
location: complement(10242..11219)
location: region:10242-11219:-1
so has part: feature:10242-11219:-1:exon

WP_244956420.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10242-11219:-1:exon