Geobacillus subterraneus strain CPW16 plasmid pBsrF12, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Geobacillus.
Genome-Wide Identification of 5-Methylcytosine Sites in Bacterial Genomes By High-Throughput Sequencing of MspJI Restriction Fragments
Submitted (07-APR-2020) Genome Biology, NEB, 240 County Rd, Ipswich, MA 01938, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP051163.1.\nBacteria and source DNA available from NEB collection 695.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 01-DEC-2017\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: BsrF_new_BP9_50_HGAP3_1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 145.47x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 10:59:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,650\nCDSs (total) :: 3,516\nGenes (coding) :: 3,375\nCDSs (with protein) :: 3,375\nGenes (RNA) :: 134\nrRNAs :: 9, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 10, 10 (5S, 16S, 23S)\ntRNAs :: 100\nncRNAs :: 5\nPseudo Genes (total) :: 141\nCDSs (without protein) :: 141\nPseudo Genes (ambiguous residues) :: 0 of 141\nPseudo Genes (frameshifted) :: 41 of 141\nPseudo Genes (incomplete) :: 104 of 141\nPseudo Genes (internal stop) :: 18 of 141\nPseudo Genes (multiple problems) :: 21 of 141\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
mutual gap in cmsearch alignment for this rRNA model is longer than 100; Derived by automated computational analysis using gene prediction method: cmsearch.
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_012748967.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012748966.1
COORDINATES: similar to AA sequence:RefSeq:WP_018628639.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013082569.1
LacI family DNA-binding transcriptional regulator