Staphylococcus warneri strain 22.1 plasmid pSW22.1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus.
Characterization of solvent-tolerant staphylococci
Submitted (07-SEP-2018) Center of analytical and genetic engineering research, Institute of Microbiology, Belarus National Academy of Sciences, Kuprevich 2, Minsk 220141, Belarus
REFSEQ INFORMATION: The reference sequence is identical to\nCP032158.1.\nBacteria and source DNA available from Katerina Akhremchuk, Center\nof analytical and genetic engineering research, Institute of\nMicrobiology, Belarus.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 07-SEP-2018\nAssembly Method :: SPAdes v. 3.9.0; A5-miseq v. 20160825;\n Pilon v. 1.22\nAssembly Name :: v.3.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 340.0x\nSequencing Technology :: Illumina MiSeq; Sanger\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/21/2023 02:06:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,518\nCDSs (total) :: 2,432\nGenes (coding) :: 2,404\nCDSs (with protein) :: 2,404\nGenes (RNA) :: 86\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 4\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 13 of 28\nPseudo Genes (incomplete) :: 9 of 28\nPseudo Genes (internal stop) :: 10 of 28\nPseudo Genes (multiple problems) :: 4 of 28\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_000733274.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
penicillin-hydrolyzing class A beta-lactamase BlaZ
COORDINATES: similar to AA sequence:RefSeq:WP_001105942.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002487969.1
COORDINATES: similar to AA sequence:RefSeq:WP_002449936.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_002489264.1
COORDINATES: similar to AA sequence:RefSeq:WP_001831396.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002485948.1
COORDINATES: similar to AA sequence:RefSeq:WP_001831373.1
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002489266.1
COORDINATES: similar to AA sequence:RefSeq:WP_002440835.1
COORDINATES: similar to AA sequence:RefSeq:WP_002488419.1
type III toxin-antitoxin system ToxN/AbiQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_001832799.1
COORDINATES: similar to AA sequence:RefSeq:WP_002488420.1
COORDINATES: similar to AA sequence:RefSeq:WP_002285155.1
COORDINATES: similar to AA sequence:RefSeq:WP_002272712.1
COORDINATES: similar to AA sequence:RefSeq:WP_001233000.1
COORDINATES: similar to AA sequence:RefSeq:WP_002485953.1
COORDINATES: similar to AA sequence:RefSeq:WP_002485949.1
COORDINATES: similar to AA sequence:RefSeq:WP_002440813.1
COORDINATES: similar to AA sequence:RefSeq:WP_002485951.1
COORDINATES: similar to AA sequence:RefSeq:WP_000536961.1
COORDINATES: similar to AA sequence:RefSeq:YP_501278.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002447408.1
ABC-F type ribosomal protection protein Msr(A)
COORDINATES: similar to AA sequence:RefSeq:WP_000583525.1
COORDINATES: similar to AA sequence:RefSeq:WP_000690624.1
COORDINATES: similar to AA sequence:RefSeq:WP_001284656.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001096376.1
beta-lactam sensor/signal transducer BlaR1