Paucilactobacillus hokkaidonensis JCM 18461 strain LOOC260 plasmid pLOOC260-1, complete sequence.
type: Entry
definition: Paucilactobacillus hokkaidonensis JCM 18461 strain LOOC260 plasmid pLOOC260-1, complete sequence.
sequence version: NZ_AP014681.1
sequence date: 2023-03-12
sequence: sequence
division: CON
label: NZ_AP014681.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00000344
keyword: RefSeq
source: Paucilactobacillus hokkaidonensis JCM 18461
organism: Paucilactobacillus hokkaidonensis JCM 18461
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Paucilactobacillus.
reference: 1
references: 25879859
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP014681.1.\nAnnotated by GenomeRefine.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP SMRTAnalysis v. 2.1\nGenome Coverage :: 300X\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 15:05:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,388\nCDSs (total) :: 2,316\nGenes (coding) :: 2,277\nCDSs (with protein) :: 2,277\nGenes (RNA) :: 72\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 39\nCDSs (without protein) :: 39\nPseudo Genes (ambiguous residues) :: 0 of 39\nPseudo Genes (frameshifted) :: 12 of 39\nPseudo Genes (incomplete) :: 24 of 39\nPseudo Genes (internal stop) :: 7 of 39\nPseudo Genes (multiple problems) :: 4 of 39\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 81630
topology: circular
so has quality: SO_0000988
location: 1..81630
location: region:1-81630:1
RO_0002162: 1291742

NZ_AP014681
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00000344
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260(T), a psychrotrophic lactic acid bacterium isolated from silage
author: Tanizawa, Y.
author: Tohno, M.
author: Kaminuma, E.
author: Nakamura, Y.
author: Arita, M.
journal: BMC Genomics 16 (1), 240 (2015)
pubmed: 25879859
comments: DOI:10.1186/s12864-015-1435-2 Publication Status: Online-Only

25879859
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Tohno, M.
author: Tanizawa, Y.
journal: Submitted (10-NOV-2014) Contact:Masanori Tohno National Agriculture and Food Research Organization, National Institute of Livestock and Grassland Science, Animal Feeding and Management Research Division; Senbonmatsu 768, Nasushiobara, Tochigi 329-2793, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81630:1
position: 81630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-81630:1:source
so part of: sequence
organism: Paucilactobacillus hokkaidonensis JCM 18461
mol type: genomic DNA
strain: LOOC260
type material: type strain of Lactobacillus hokkaidonensis
plasmid: pLOOC260-1
note: type strain of Lactobacillus hokkaidonensis

1291742
type: Taxonomy
SIO_000068: taxonomy

LOOC260_RS11040
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11040
old locus tag: LOOC260_200010
so part of: sequence
location: 1..1314
location: region:1-1314:1
so has part: feature:1-1314:1:exon
subclass of: SO_0000010

position:1314:1
position: 1314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1314:1:exon

LOOC260_RS11040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11040
old locus tag: LOOC260_200010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014386895.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: primase C-terminal domain-containing protein
translation: MYDFKTIQDAQRLVLHDSLHTYKVKNSSSNIAGQVMETPTKKGAIALFSSKDSMQKAHGVVVTSFEALDAIADRMTHWTPNTFNWLGYTQNRGSVRGHREANLAQINTLVVDIDFSDAQERDAREREVLGAVTVADLFIPTMILRTAKGFHIYYVFDQPMFLRKKRGQFPVLKAAQKMSNFVRQWIQQRVAGVDVGCNNFGIFRIPRQDNLIFFDANMLIQVSALMKWSQYYAAQVPVTDQTGDKVISLSPDEGRQVDQAWFKALLKVTTVKSGHGLARHNTVMTLALAMYQSKVSQQRARDVLDVFNSNLHEPLVDREVVQCVRDAYSGDYRGAALSYVQGLLDQWVPNFSGKVVAGIGWHKFAKPRAERQYSHAHEWRQDVLALINRMGGSAASVAMSTRQIQAELGISPASLNRVMKQLQATSQLRRVQRGNGF
SIO_010081: LOOC260_RS11040
subclass of: SO_0000673
so part of: LOOC260_RS11040
location: 1..1314
location: region:1-1314:1
so has part: feature:1-1314:1:exon

WP_052467406.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1314:1:exon

LOOC260_RS11045
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11045
old locus tag: LOOC260_200020
pseudo: true
so part of: sequence
location: complement(<1307..1774)
location: region:1307-1774:-1
so has part: feature:1307-1774:-1:exon
subclass of: SO_0000010

position:1307:-1
position: 1307
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:1774:-1
position: 1774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1307-1774:-1:exon

LOOC260_RS11045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11045
old locus tag: LOOC260_200020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010625604.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replication initiation protein
SIO_010081: LOOC260_RS11045
subclass of: SO_0000673
so part of: LOOC260_RS11045
location: complement(<1307..1774)
location: region:1307-1774:-1
so has part: feature:1307-1774:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1307-1774:-1:exon

LOOC260_RS11050
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11050
old locus tag: LOOC260_200030
so part of: sequence
location: complement(2464..2676)
location: region:2464-2676:-1
so has part: feature:2464-2676:-1:exon
subclass of: SO_0000010

position:2464:-1
position: 2464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2676:-1
position: 2676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2464-2676:-1:exon

LOOC260_RS11050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11050
old locus tag: LOOC260_200030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620841.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSGVIKMDEKKILKTIDEMLADPWQIDIQELFEVSVNEPDEIKRNFYESLYTYVLQKRQEDIISRPGFVI
SIO_010081: LOOC260_RS11050
subclass of: SO_0000673
so part of: LOOC260_RS11050
location: complement(2464..2676)
location: region:2464-2676:-1
so has part: feature:2464-2676:-1:exon

WP_041095589.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2464-2676:-1:exon

LOOC260_RS11055
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11055
old locus tag: LOOC260_200040
so part of: sequence
location: complement(3033..3620)
location: region:3033-3620:-1
so has part: feature:3033-3620:-1:exon
subclass of: SO_0000010

position:3033:-1
position: 3033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3620:-1
position: 3620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3033-3620:-1:exon

LOOC260_RS11055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11055
old locus tag: LOOC260_200040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MQQVVLPIKDSNVLKEVQDTLLNNFKAGRRNYTIFQVGKATLLRVSDVMGLKQADIFNPDGSIKQNAFIHDRKTGKPNTLYLKPVQTELLLYRQWLLDHKLDSEWLFPSIQHPERHITEKQFYKIMSKVGDLLSINYLGTHTMRKTGAYRVYTQSNYNVGLVMHLLNHSSEAMTLAYLGLDQASTETMLDQIDFG
SIO_010081: LOOC260_RS11055
subclass of: SO_0000673
so part of: LOOC260_RS11055
location: complement(3033..3620)
location: region:3033-3620:-1
so has part: feature:3033-3620:-1:exon

WP_041095592.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3033-3620:-1:exon

LOOC260_RS11060
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11060
old locus tag: LOOC260_200050
so part of: sequence
location: 3724..4002
location: region:3724-4002:1
so has part: feature:3724-4002:1:exon
subclass of: SO_0000010

position:3724:1
position: 3724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4002:1
position: 4002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3724-4002:1:exon

LOOC260_RS11060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11060
old locus tag: LOOC260_200050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003625288.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MSNTIIKNKTISTRVTPDISERAKANLAKQGLTVSEYIRLSLVKAANNEVRLVSFLDSPEALAAKKEAETGQVKNIGSLTDFEDWIDKLDAN
SIO_010081: LOOC260_RS11060
subclass of: SO_0000673
so part of: LOOC260_RS11060
location: 3724..4002
location: region:3724-4002:1
so has part: feature:3724-4002:1:exon

WP_003625288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3724-4002:1:exon

LOOC260_RS11065
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11065
old locus tag: LOOC260_200060
so part of: sequence
location: 3992..4294
location: region:3992-4294:1
so has part: feature:3992-4294:1:exon
subclass of: SO_0000010

position:3992:1
position: 3992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4294:1
position: 4294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3992-4294:1:exon

LOOC260_RS11065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11065
old locus tag: LOOC260_200060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010625626.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MQIKQTKSFERELKKLVKKHFPITVLKPCLEAIVEQDVLVLKQIKDHALKGNWRGYREFHPARYGNYGKNYDNWIVIYQLDHDELILLLVATGSHEILNQ
SIO_010081: LOOC260_RS11065
subclass of: SO_0000673
so part of: LOOC260_RS11065
location: 3992..4294
location: region:3992-4294:1
so has part: feature:3992-4294:1:exon

WP_005917927.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3992-4294:1:exon

LOOC260_RS12575
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12575
pseudo: true
so part of: sequence
location: complement(4412..>4543)
location: region:4412-4543:-1
so has part: feature:4412-4543:-1:exon
subclass of: SO_0000010

position:4412:-1
position: 4412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4543:-1
position: 4543
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4412-4543:-1:exon

LOOC260_RS12575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002287733.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: restriction endonuclease subunit S
SIO_010081: LOOC260_RS12575
subclass of: SO_0000673
so part of: LOOC260_RS12575
location: complement(4412..>4543)
location: region:4412-4543:-1
so has part: feature:4412-4543:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4412-4543:-1:exon

LOOC260_RS11070
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11070
old locus tag: LOOC260_200070
so part of: sequence
location: complement(4553..5785)
location: region:4553-5785:-1
so has part: feature:4553-5785:-1:exon
subclass of: SO_0000010

position:4553:-1
position: 4553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5785:-1
position: 5785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4553-5785:-1:exon

LOOC260_RS11070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11070
old locus tag: LOOC260_200070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013102104.1
GO function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: polysaccharide deacetylase family protein
translation: MIKTKITSLVIGLILGAGLGLYGNIDDDVMAAKTDSQTTKTVKQAKSLSQQYQYKEAKSVLSGHKGTTVDHLKKSINKQQSKLVTWDDPTKISHLFYHSLIVDPGKAFSSKQAQGYKDYMVTIDEFMPMLNQLYDNGYVLINFKDIISIDKQGKVTFKPVKLPEGKKPLIISQDDVNYYEYMKNSGFADKLVVNKQGDVKNQYTNNGQKKIGDYDMVPIIDTFIKKHPDFSYGGSKGVIAETGYNGALGYRSSKSQYGDTKKTHREVKKATKVANAMKKEGWQFASHSWGHINMTTASVDDIKKDTALWQKEVQPIVGKTPVLIFPFGADIGSFTNYTNDNAKYTYLKSSGFSIFDNVDASQTSWGQLTNDYYRNARINVDGIRLHETMTGENTVLNDFFNTKDFYHRDK
SIO_010081: LOOC260_RS11070
subclass of: SO_0000673
so part of: LOOC260_RS11070
location: complement(4553..5785)
location: region:4553-5785:-1
so has part: feature:4553-5785:-1:exon

WP_041095608.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4553-5785:-1:exon

LOOC260_RS11075
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11075
old locus tag: LOOC260_200080
pseudo: true
so part of: sequence
location: 5983..6907
location: region:5983-6907:1
so has part: feature:5983-6907:1:exon
subclass of: SO_0000010

position:5983:1
position: 5983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6907:1
position: 6907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5983-6907:1:exon

LOOC260_RS11075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11075
old locus tag: LOOC260_200080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS30-like element ISLpl1 family transposase
SIO_010081: LOOC260_RS11075
subclass of: SO_0000673
so part of: LOOC260_RS11075
location: 5983..6907
location: region:5983-6907:1
so has part: feature:5983-6907:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5983-6907:1:exon

LOOC260_RS11085
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11085
old locus tag: LOOC260_200100
so part of: sequence
location: 7109..9223
location: region:7109-9223:1
so has part: feature:7109-9223:1:exon
subclass of: SO_0000010

position:7109:1
position: 7109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9223:1
position: 9223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7109-9223:1:exon

LOOC260_RS11085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11085
old locus tag: LOOC260_200100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005470367.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-dependent Clp protease ATP-binding subunit
translation: MANFYENDPFFNNDMDDVFNQLFRGMDNQNSERARYLVNGKSLTPDEFAQYRATGKLPQNNKTIEVSKDGKQAFKKGGILEKLGTNLTEQARDGLLDPVIGRENEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQAIVAGKVPETIQDKEIYSIDLSSLEAGTQYRGSFEENIKQLVKEVKAAGNIILFFDEIHQIIGTGATGGEDGGKGLADIIKPALSRGELTVIGATTQDEYRNTILKNAALARRFNDVVINEPTAADTLRILQGVKKLYEKHHHVVLPDDVLKAAVDYSIQYIPQRTLPDKAIDLIDMTAAHLAAKNSQTDVETLDQRVKKLEAAKEAAVKSEDFKKADDIKKSIEETKQKIKETDQKEKITATIDDVAQSVERLTGIPVSDMGANDIEHLKNLDKRLKSKVIGQDEAVEMVAKAIRRNRAGFSEGDQPIGSFLFVGPTGVGKTELAKQLALDMFGNENAIIRLDMSEYADRTAVSKLIGTSAGYVGYEDNANTLTERVRRNPYSIVLLDEIEKADPQVLTLLLQVMDDGRLTDGQGNVINFKNTIIIATSNAGFGNEALSGDKQRDQSLMDKLAPFFRPEFLNRFNGIVEFSHLTKQDLSQIVDLMLADVQKTLAKKSIKLEVTKAAKDWLMEQGYDEAMGARPLRRVIEQQIRDKVTDFYLDHLDVKNLKADLVDGEIVISAA
SIO_010081: LOOC260_RS11085
subclass of: SO_0000673
so part of: LOOC260_RS11085
location: 7109..9223
location: region:7109-9223:1
so has part: feature:7109-9223:1:exon

WP_041095610.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7109-9223:1:exon

LOOC260_RS11090
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11090
pseudo: true
so part of: sequence
location: complement(9405..10149)
location: region:9405-10149:-1
so has part: feature:9405-10149:-1:exon
subclass of: SO_0000010

position:9405:-1
position: 9405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10149:-1
position: 10149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9405-10149:-1:exon

LOOC260_RS11090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014081502.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: LOOC260_RS11090
subclass of: SO_0000673
so part of: LOOC260_RS11090
location: complement(9405..10149)
location: region:9405-10149:-1
so has part: feature:9405-10149:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9405-10149:-1:exon

LOOC260_RS12100
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12100
old locus tag: LOOC260_200120
so part of: sequence
location: complement(10167..10664)
location: region:10167-10664:-1
so has part: feature:10167-10664:-1:exon
subclass of: SO_0000010

position:10167:-1
position: 10167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10664:-1
position: 10664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10167-10664:-1:exon

LOOC260_RS12100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12100
old locus tag: LOOC260_200120
EC number: 3.1.21.-
inference: COORDINATES: protein motif:HMM:NF021048.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ApaLI family restriction endonuclease
translation: MKKIRTLASKYSEQLSKKVDIRIKEMQIDSKYHYLVYKVLGVTTKEGDLVDLYQNKGRFLYKYAGSFLEDAARLCFIEKYGEDNAVKIRIPNTLGDSPKTFEIDCLVNNDAREIKWRDATTDGDHVTKEHTRLQVVSEAGYKPIRVMFFYPNRKQGERKITCVNA
SIO_010081: LOOC260_RS12100
subclass of: SO_0000673
so part of: LOOC260_RS12100
location: complement(10167..10664)
location: region:10167-10664:-1
so has part: feature:10167-10664:-1:exon

WP_082232458.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10167-10664:-1:exon

LOOC260_RS11100
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11100
old locus tag: LOOC260_200130
so part of: sequence
location: complement(10752..11306)
location: region:10752-11306:-1
so has part: feature:10752-11306:-1:exon
subclass of: SO_0000010

position:10752:-1
position: 10752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11306:-1
position: 11306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10752-11306:-1:exon

LOOC260_RS11100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11100
old locus tag: LOOC260_200130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010078380.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF536 domain-containing protein
translation: MPKSIRELADELNVSKQTIQYHYQRLPAKNRQKDSRGANIISPTAERIIRDKVAKPFIAKNQQTDSKKTTKTSKENNELVATLRREVEDLKSQRDKQLATKDQQIDHLTKLVDQQQQLQLATVAENNDLKEHVRKLSSLIEISKPVQQQEDGKEANLSINNNPNYIRDKKKIFKKAKINWLHFW
SIO_010081: LOOC260_RS11100
subclass of: SO_0000673
so part of: LOOC260_RS11100
location: complement(10752..11306)
location: region:10752-11306:-1
so has part: feature:10752-11306:-1:exon

WP_041095612.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10752-11306:-1:exon

LOOC260_RS11105
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11105
old locus tag: LOOC260_200140
pseudo: true
so part of: sequence
location: complement(11299..>11760)
location: region:11299-11760:-1
so has part: feature:11299-11760:-1:exon
subclass of: SO_0000010

position:11299:-1
position: 11299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11760:-1
position: 11760
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11299-11760:-1:exon

LOOC260_RS11105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11105
old locus tag: LOOC260_200140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016526818.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replication initiation protein
SIO_010081: LOOC260_RS11105
subclass of: SO_0000673
so part of: LOOC260_RS11105
location: complement(11299..>11760)
location: region:11299-11760:-1
so has part: feature:11299-11760:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11299-11760:-1:exon

LOOC260_RS11110
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11110
old locus tag: LOOC260_200150
so part of: sequence
location: complement(11927..14920)
location: region:11927-14920:-1
so has part: feature:11927-14920:-1:exon
subclass of: SO_0000010

position:11927:-1
position: 11927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14920:-1
position: 14920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11927-14920:-1:exon

LOOC260_RS11110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11110
old locus tag: LOOC260_200150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011222049.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MPTNPHHQQSFGTFEGISSADQLRLYFQLTDFDRALIDEMRSATTKLGFAVQLSSVRFLGTFPTNLQQVPAEVIDYLAKQLTIDGRALAGYTRKMTISQHMALIKRKYHYQAFTDPAVKASLNDWLLERARFTNETEKLLFDMLLKKCLDEKILLPGVTTFERFVNGVTEVAADLLDSQLVAVPSAEETDRLLNLLTAVGEPIYGATIKMDLLRNPLMDESRKEINRGFTRLKQFQQFKTEDWQLGAIPAGKLKNLANYAFKAKASLIKRMSVKRQTALLVAFVSEYRKRAMDEQLLALSRFYETLFKRAKNKEAKERLRTIKDFDHAALTLSQIVRLLMDETISSQDLRNKVLATYPPEIIESAVTQVNQLVRNEREPIAIEELLNAYRKFRKFIPDILATIVFEGTTNGQDCLMVWEFIRQRFPRPVTYRMFEQIVEKLPKKWRYYIRENPQVTNQCVLIAGIELLVHGLKRHDIYVRQSNRYLDPMACLIDKSTWRQQKAVLIQQLDLPQTGQAAVEAVKQDLALSYAEALKNWADSEMAQVKEVDGQEKIIVAKLRKVREQKDEAAFKSRVRHLIPKIDLSDILLEVNQQLQLTQCFSHVSESGTKMKHVDISILAVLLAEACNIGLSPVAKNSSNSLKYDRLMYVDHQYLRIDTLAAANRRIINAHKKLKSALIWGDGQMASADGIRYVTPQRSLYSRSNPKYFGRGRGVTFYNFVSDQYIGFHGMVVAGTLRDSLYLLEGFLNQGSSLEPTQIMTDTAGYSDLVFGLFGLLGFQFSPRIANSQGTKLWRIDSTADYQVLNGVSQNRINLRLIEEHWEDILRVAGSLKSGKVNATELTQALQREGHPTALGKAITEYGKVYKTKHQLRYLSDEIYARQILEQLNKGEARHALCRNIFYGRKGKLYQTYFDGMEEQLNALSLVTNAIIYWNTVYLEKIVTQMQSEGFDCSDDMIGKLSPLMFEHINFVGKYTFQYNEALENGHLRPLDEADEK
SIO_010081: LOOC260_RS11110
subclass of: SO_0000673
so part of: LOOC260_RS11110
location: complement(11927..14920)
location: region:11927-14920:-1
so has part: feature:11927-14920:-1:exon

WP_041095614.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11927-14920:-1:exon

LOOC260_RS11115
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11115
old locus tag: LOOC260_200160
so part of: sequence
location: 15099..15695
location: region:15099-15695:1
so has part: feature:15099-15695:1:exon
subclass of: SO_0000010

position:15099:1
position: 15099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15695:1
position: 15695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15099-15695:1:exon

LOOC260_RS11115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11115
old locus tag: LOOC260_200160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003582117.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIIGYARVSKDDQNLNRQIDQLMAYGAEKIIQEKFTGTRQRRPGITQLLQTIRAHDVVVVESISRLGRNTLDILNLIQLLHQKQIKFVSLKEQMDTETPTGRAMLQMMSVIAELERNLLADRVKEGIAASRRRGVTVGRPRIAQEKLDIAIRMYQSGDYSVKEILATNQISSGTFYREVNRLKLKKLKRKDDPSASHN
SIO_010081: LOOC260_RS11115
subclass of: SO_0000673
so part of: LOOC260_RS11115
location: 15099..15695
location: region:15099-15695:1
so has part: feature:15099-15695:1:exon

WP_003582117.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15099-15695:1:exon

LOOC260_RS11120
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11120
old locus tag: LOOC260_200170
so part of: sequence
location: 15818..16141
location: region:15818-16141:1
so has part: feature:15818-16141:1:exon
subclass of: SO_0000010

position:15818:1
position: 15818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16141:1
position: 16141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15818-16141:1:exon

LOOC260_RS11120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11120
old locus tag: LOOC260_200170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003582114.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MDYQNYVQMLKAMADPNRLKIIDLLSCGSLCACDILQHFDFSQPTLSHHMKVLQNAGIVFAVKDGKWQHYSLQKRFVQEFKQNTDQLLAADEHCLCQRSDCEKDVAN
SIO_010081: LOOC260_RS11120
subclass of: SO_0000673
so part of: LOOC260_RS11120
location: 15818..16141
location: region:15818-16141:1
so has part: feature:15818-16141:1:exon

WP_003582114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15818-16141:1:exon

LOOC260_RS11125
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
gene: arsA
locus tag: LOOC260_RS11125
old locus tag: LOOC260_200180
so part of: sequence
location: 16193..17923
location: region:16193-17923:1
so has part: feature:16193-17923:1:exon
subclass of: SO_0000010

position:16193:1
position: 16193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17923:1
position: 17923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16193-17923:1:exon

LOOC260_RS11125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
gene: arsA
locus tag: LOOC260_RS11125
old locus tag: LOOC260_200180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016368213.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO process: GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: arsenical pump-driving ATPase
translation: MEKYSPQEINLTKYLFFTGKGGVGKTTVASATAISLADAGHRVMIVSTDPASNLQDVFKVSLTNQPKPIPNISGLFAANFDPVIAANEYREQVIQPYRGVLPKEAIQNMAEQLSGSCTVEIAAFNEFANFLTSSKINQQFDYIIFDTAPTGHTLRMLQLPSAWSNYLDKNDRGASCLGQLAGLNDKKAMYQKAVETLGNPQATTLFLVTRPQKGALLEAQRASHELAALNIKNQQLIINGILNQPTDAVSQTIFKQQQADLQNMPVTLDQLPKLAIPLRAYNVLGLANLRLLLKDQQPQITEEPVTASHFPDLDVVVKNLVQSNKKIIFTMGKGGVGKTTVAVQIAQKIAAQHKTVHLATTDPADHLKYFKITSPLIKVSHIDEKKSLKEYQNEVLTTAKKTMKSNDVDYVAEDLRSPCTQEIAVFRAFAELVAQNDSDVVVVDTAPTGHTLLLLNSTQSYAQEVAHTSGSVPQAVVNLLPRLQDPKQTEIVMVTLPEATPVYESMRLDDDLKRASLAHTWWVVNQSMLATQTTDPCLLARVQSEVKWIDQVKELSNNHFAVMQWQPNYEKTLLTV
SIO_010081: LOOC260_RS11125
subclass of: SO_0000673
so part of: LOOC260_RS11125
location: 16193..17923
location: region:16193-17923:1
so has part: feature:16193-17923:1:exon

WP_016373382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16193-17923:1:exon

LOOC260_RS11130
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11130
old locus tag: LOOC260_200190
so part of: sequence
location: 17966..19261
location: region:17966-19261:1
so has part: feature:17966-19261:1:exon
subclass of: SO_0000010

position:17966:1
position: 17966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19261:1
position: 19261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17966-19261:1:exon

LOOC260_RS11130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11130
old locus tag: LOOC260_200190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003682896.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: arsenic transporter
translation: MQVFFAVGIFLLTLLFVIWQPRGLSIGWTAVGGAILALLFGVVSFKDVGTVTGIVWNATLSFVAIILISLILDQIGFFEWAALHMARWANGHGIRMFILVTTLGAVVAALFANDGAALILTPIVLAMVRALHFDEKQVFPFIIASGFIADTTSLPMIVSNLVNIVSADFFGISFSAYALRMWIPDLFSLLGSIGILYLYFRKALPRKFDATQVAEPSSALKDQRLFKFSWVVLILLLIGYFSSGFLGIPVSFIALSIAAIFLIVGQISSHVNAMAAIKGAPWNIVFFSIGMYVVVYGLQNVGLTTLLSGVITEIAKGGRFAATMGMGYLAALLSSLMNNMPTVMINALSIKGADVSGLIHHTLVYANIIGSDLGPKITPIGSLATLVWLHVLAQKGVKIKWGTYFKIGIVTTIPVLFITLCGLWLSLSIFG
SIO_010081: LOOC260_RS11130
subclass of: SO_0000673
so part of: LOOC260_RS11130
location: 17966..19261
location: region:17966-19261:1
so has part: feature:17966-19261:1:exon

WP_041095617.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17966-19261:1:exon

LOOC260_RS11135
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
gene: arsD
locus tag: LOOC260_RS11135
old locus tag: LOOC260_200200
so part of: sequence
location: 19298..19633
location: region:19298-19633:1
so has part: feature:19298-19633:1:exon
subclass of: SO_0000010

position:19298:1
position: 19298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19633:1
position: 19633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19298-19633:1:exon

LOOC260_RS11135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
gene: arsD
locus tag: LOOC260_RS11135
old locus tag: LOOC260_200200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013721068.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: arsenite efflux transporter metallochaperone ArsD
translation: MKKIELFEPAMCCSTGVCGPSVDKELIQTTAIQRYVSVNAQGQAMFIRRNLAQNPDAFVRNPIVAQELKRQGINALPITLVDGQLVKTGEYPTINEFSSYLDMDLVAALVH
SIO_010081: LOOC260_RS11135
subclass of: SO_0000673
so part of: LOOC260_RS11135
location: 19298..19633
location: region:19298-19633:1
so has part: feature:19298-19633:1:exon

WP_025013532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19298-19633:1:exon

LOOC260_RS11140
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
gene: arsC
locus tag: LOOC260_RS11140
old locus tag: LOOC260_200210
so part of: sequence
location: 19656..20072
location: region:19656-20072:1
so has part: feature:19656-20072:1:exon
subclass of: SO_0000010

position:19656:1
position: 19656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20072:1
position: 20072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19656-20072:1:exon

LOOC260_RS11140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
gene: arsC
locus tag: LOOC260_RS11140
old locus tag: LOOC260_200210
EC number: 1.20.4.4
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004563097.1
GO function: GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: arsenate reductase (thioredoxin)
translation: MTQIYFLCTGNACRSQMAEGFAKKILGNDWRVASAGVEVHGLNPLAVKVMAEKGIDISQQTSKLIDPDYLLHSDLVVTLCGDARDRCPVTPPTVKKKHWPLPDPALAAGSEQDRIVVFRKVRDQIEQQIIDLAKVGNL
SIO_010081: LOOC260_RS11140
subclass of: SO_0000673
so part of: LOOC260_RS11140
location: 19656..20072
location: region:19656-20072:1
so has part: feature:19656-20072:1:exon

WP_004563097.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19656-20072:1:exon

LOOC260_RS11145
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11145
old locus tag: LOOC260_200220
so part of: sequence
location: 20328..20834
location: region:20328-20834:1
so has part: feature:20328-20834:1:exon
subclass of: SO_0000010

position:20328:1
position: 20328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20834:1
position: 20834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20328-20834:1:exon

LOOC260_RS11145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11145
old locus tag: LOOC260_200220
inference: COORDINATES: protein motif:HMM:NF016148.2
GO component: GO:0044423 - virion component [Evidence IEA]
GO process: GO:0016032 - viral process [Evidence IEA]; GO:0019068 - virion assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: minor capsid protein
translation: MTTRMKETLNKGLSRRMKKSDINKMTRSIPQSGDRIDDNLATPMNQMLSRIYTLTTNEAIRNSNGGKNRAYDQQNVQYVMWLTEEDDRVCDICEPLDRQTFAYGQAPIPVTDTHPRCRCQLVACDEDGNLLSGELIGYLRNKKSPLSLKLSGSGILLIGFAHNKVEGC
SIO_010081: LOOC260_RS11145
subclass of: SO_0000673
so part of: LOOC260_RS11145
location: 20328..20834
location: region:20328-20834:1
so has part: feature:20328-20834:1:exon

WP_235808586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20328-20834:1:exon

LOOC260_RS11150
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11150
old locus tag: LOOC260_200230
so part of: sequence
location: complement(20885..21133)
location: region:20885-21133:-1
so has part: feature:20885-21133:-1:exon
subclass of: SO_0000010

position:20885:-1
position: 20885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21133:-1
position: 21133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20885-21133:-1:exon

LOOC260_RS11150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11150
old locus tag: LOOC260_200230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003568375.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GlsB/YeaQ/YmgE family stress response membrane protein
translation: MHWLWVLIIGAIIGAIAGAITSKGKSMGWIANIVAGLVGSSIGEAILGSWGPQLAGMAIIPSIIGAVVVVAVVSFFVGKSKN
SIO_010081: LOOC260_RS11150
subclass of: SO_0000673
so part of: LOOC260_RS11150
location: complement(20885..21133)
location: region:20885-21133:-1
so has part: feature:20885-21133:-1:exon

WP_041095619.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20885-21133:-1:exon

LOOC260_RS12610
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12610
old locus tag: LOOC260_200240
so part of: sequence
location: complement(21140..21271)
location: region:21140-21271:-1
so has part: feature:21140-21271:-1:exon
subclass of: SO_0000010

position:21140:-1
position: 21140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21271:-1
position: 21271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21140-21271:-1:exon

LOOC260_RS12610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12610
old locus tag: LOOC260_200240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRFGLWSKISIIISISQLLLAIFKEIQNYNKSKKHPSKNKRG
SIO_010081: LOOC260_RS12610
subclass of: SO_0000673
so part of: LOOC260_RS12610
location: complement(21140..21271)
location: region:21140-21271:-1
so has part: feature:21140-21271:-1:exon

WP_016511903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21140-21271:-1:exon

LOOC260_RS11155
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11155
old locus tag: LOOC260_200250
so part of: sequence
location: 21482..21676
location: region:21482-21676:1
so has part: feature:21482-21676:1:exon
subclass of: SO_0000010

position:21482:1
position: 21482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21676:1
position: 21676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21482-21676:1:exon

LOOC260_RS11155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11155
old locus tag: LOOC260_200250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRTNLQFFADPNPEPKPNDSNPNPDGKNQKPAGKTYTQDDIGKMMASKAKEVESNLRDDFEKGA
SIO_010081: LOOC260_RS11155
subclass of: SO_0000673
so part of: LOOC260_RS11155
location: 21482..21676
location: region:21482-21676:1
so has part: feature:21482-21676:1:exon

WP_041095621.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21482-21676:1:exon

LOOC260_RS11160
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11160
old locus tag: LOOC260_200260
so part of: sequence
location: 21654..22127
location: region:21654-22127:1
so has part: feature:21654-22127:1:exon
subclass of: SO_0000010

position:21654:1
position: 21654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22127:1
position: 22127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21654-22127:1:exon

LOOC260_RS11160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11160
old locus tag: LOOC260_200260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016511901.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4355 domain-containing protein
translation: MILKRELKQKEQEWLEKGEKRASMNASEKVQADLEEQRQALKEQQDRLQEKLDEADRKDALAATKTVLTDKHIPAEFAEFISDVKEDVRNNNLDKFTNLFNKAVQEAVEKKVTGNQSPQNGGQQFNASMTREDFAQMSLEEQTNLYRQNPDLYNKLK
SIO_010081: LOOC260_RS11160
subclass of: SO_0000673
so part of: LOOC260_RS11160
location: 21654..22127
location: region:21654-22127:1
so has part: feature:21654-22127:1:exon

WP_041095623.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21654-22127:1:exon

LOOC260_RS11165
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11165
old locus tag: LOOC260_200270
so part of: sequence
location: 22140..23183
location: region:22140-23183:1
so has part: feature:22140-23183:1:exon
subclass of: SO_0000010

position:22140:1
position: 22140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23183:1
position: 23183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22140-23183:1:exon

LOOC260_RS11165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11165
old locus tag: LOOC260_200270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016511900.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTVINGNPTNFSNLIEPTVFLDWIYRQNTQTNRFVQSGVLKNDPVLGGRLLQPGRSVEIPAMNDLSGDADEWNDTNDIQTNGVDSAMEYCIKMYQSKSFGNTDWGDLISGASTQQQIANRFGNWWTRQDTKILLDTVKATFNNTDIATAKTYGVGSEKELSASDFVKALARMGDVMDNTLSTLVVNSAAYSEMREQQLIEYLQPAGVATPIATYQGMSIIQDDSIPVASDGTSYALIFGPGAIDYATATPTNGLVVQRDEFQKGGMVAIIQKRVVTCHVAGTDVDLTQTKPDTYLADLAAGTKPLFQVSYDPRNIQLVKYGFKVGTDYVVPTINSPKAKASEAVQDL
SIO_010081: LOOC260_RS11165
subclass of: SO_0000673
so part of: LOOC260_RS11165
location: 22140..23183
location: region:22140-23183:1
so has part: feature:22140-23183:1:exon

WP_041095625.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22140-23183:1:exon

LOOC260_RS12105
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12105
so part of: sequence
location: 23222..24009
location: region:23222-24009:1
so has part: feature:23222-24009:1:exon
subclass of: SO_0000010

position:23222:1
position: 23222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24009:1
position: 24009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23222-24009:1:exon

LOOC260_RS12105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013727908.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MKNYPSNITRQQFELIRPVLENFRKRTKPRKYYLYEVFCAVLYVLKTGCQWRQVPGDFPEWRSVYNYYKIWSTKVEPTADSLLEQVFKKIVIDRRTYQGRSALTSFIIVDAQSVKNTATAENKGYDAGKKISGIKRHLAVDIHGFPQAIHMTRANVSDRDGASAMITLHAMHLRQVQNVLVDGGYSGVNFQLDVASNLNATVQVAKRNELHRFKVIPQRWVVERSFSWLENCRRLWKNCERQLTTSLQMVVLAFLALLLKRF
SIO_010081: LOOC260_RS12105
subclass of: SO_0000673
so part of: LOOC260_RS12105
location: join(23222..23480,23480..24009)
location: region:23222-24009:1
so has part: feature:23222-23480:1:exon
so has part: feature:23480-24009:1:exon

WP_157869582.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23222-23480:1:exon

position:23480:1
position: 23480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:23480-24009:1:exon

LOOC260_RS12110
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12110
old locus tag: LOOC260_200300
pseudo: true
so part of: sequence
location: complement(<24019..24150)
location: region:24019-24150:-1
so has part: feature:24019-24150:-1:exon
subclass of: SO_0000010

position:24019:-1
position: 24019
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:24150:-1
position: 24150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24019-24150:-1:exon

LOOC260_RS12110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12110
old locus tag: LOOC260_200300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_050892470.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ISL3 family transposase
SIO_010081: LOOC260_RS12110
subclass of: SO_0000673
so part of: LOOC260_RS12110
location: complement(<24019..24150)
location: region:24019-24150:-1
so has part: feature:24019-24150:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24019-24150:-1:exon

LOOC260_RS11180
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11180
old locus tag: LOOC260_200310
so part of: sequence
location: 24340..25509
location: region:24340-25509:1
so has part: feature:24340-25509:1:exon
subclass of: SO_0000010

position:24340:1
position: 24340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25509:1
position: 25509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24340-25509:1:exon

LOOC260_RS11180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11180
old locus tag: LOOC260_200310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002831190.1
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metallophosphoesterase
translation: MKIKFLTKKFFRPRLSEFISVQTDNFLRKLKPRPFFTKYIEQVFRKNVEPNVSQNCLTLSVLTDTHEKAVASSSYYGLNGVRHIIEANKACDSLPVDYNIHLGDLIDGSDKPEISRGLLQFTMENYQNSQRPFYVLEGNHDENDKYDEHKFITSASFRRDDYYNLVTKHDFEQPEIKRLSLGSKVAWIDKGDIRVIFLNTSDIPYILNGGTKKYDFKKVRGIREQQIEDLISILEKTIDKHVVVFGHANLISQSGRSALNFNGDLVQKIFTSFNNKDSGQLKNELSGDFGVNVRYNFTDTGISTISNYICGHMHYEKHYKVNGINHIILNCSALMGKKHGVTTDYNKKWDRRYNEISELAGYFININPDKMLLQIFGYGAATRFVSFEI
SIO_010081: LOOC260_RS11180
subclass of: SO_0000673
so part of: LOOC260_RS11180
location: 24340..25509
location: region:24340-25509:1
so has part: feature:24340-25509:1:exon

WP_041095629.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24340-25509:1:exon

LOOC260_RS11185
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11185
old locus tag: LOOC260_200320
pseudo: true
so part of: sequence
location: 25521..>25883
location: region:25521-25883:1
so has part: feature:25521-25883:1:exon
subclass of: SO_0000010

position:25521:1
position: 25521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25883:1
position: 25883
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25521-25883:1:exon

LOOC260_RS11185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11185
old locus tag: LOOC260_200320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014569952.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: asparagine synthetase B
SIO_010081: LOOC260_RS11185
subclass of: SO_0000673
so part of: LOOC260_RS11185
location: 25521..>25883
location: region:25521-25883:1
so has part: feature:25521-25883:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25521-25883:1:exon

LOOC260_RS11190
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11190
old locus tag: LOOC260_200330
so part of: sequence
location: complement(26028..26888)
location: region:26028-26888:-1
so has part: feature:26028-26888:-1:exon
subclass of: SO_0000010

position:26028:-1
position: 26028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26888:-1
position: 26888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26028-26888:-1:exon

LOOC260_RS11190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11190
old locus tag: LOOC260_200330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010011975.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DegV family protein
translation: MTKINPHVAILVDSCSDVPADFIAEHHLYMVPMTIAYHDEIFLDKVTIDPDTVYANLDKEVPKTASPTGDLIAKAFADIKADGFKEVIAVCISSGLSGTFQQVEIAARVSGLDVSVIDTKNIGIASGLTAILAAQLSEEGLHKVEIEARIRTVAKHTKVFFYVPTLTYLQKGGRIGRVAGMAGTLLNIKPIISCDDDGIYYPVAKVRGEKKTLLKMKKLLAETIGNAQRFNLAVADGANHEIAAQLTAELHELYPQAEHIFTGNVSPALGVHTGPGLIGLGVQVLA
SIO_010081: LOOC260_RS11190
subclass of: SO_0000673
so part of: LOOC260_RS11190
location: complement(26028..26888)
location: region:26028-26888:-1
so has part: feature:26028-26888:-1:exon

WP_003679174.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26028-26888:-1:exon

LOOC260_RS11195
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11195
old locus tag: LOOC260_200340
so part of: sequence
location: complement(26881..27423)
location: region:26881-27423:-1
so has part: feature:26881-27423:-1:exon
subclass of: SO_0000010

position:26881:-1
position: 26881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27423:-1
position: 27423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26881-27423:-1:exon

LOOC260_RS11195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11195
old locus tag: LOOC260_200340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010011974.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1836 domain-containing protein
translation: MSTQENDFQAWLTKIQALKLPQWDDFPDFDIYMEQLINLVNQYLAPLELDPVTPAMINNYVKHKVMFKPVKKRYQREHLAAVITLTLLKTVFPLDMIRSGFNGELNVLSAQAAYDCFAANFTTQLQTLDLAQSTPLPFTKNFEWDEAIQQTAATTIIYQLISKRLMLHAPQIEKGAIAHD
SIO_010081: LOOC260_RS11195
subclass of: SO_0000673
so part of: LOOC260_RS11195
location: complement(26881..27423)
location: region:26881-27423:-1
so has part: feature:26881-27423:-1:exon

WP_041095635.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26881-27423:-1:exon

LOOC260_RS11200
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11200
old locus tag: LOOC260_200350
so part of: sequence
location: 27641..28696
location: region:27641-28696:1
so has part: feature:27641-28696:1:exon
subclass of: SO_0000010

position:27641:1
position: 27641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28696:1
position: 28696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27641-28696:1:exon

LOOC260_RS11200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11200
old locus tag: LOOC260_200350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010012445.1
GO function: GO:0000166 - nucleotide binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: oxidoreductase
translation: MTEKLTMAVIGFGKSATRYHLPYLMLRDNIQVKWVYARHLNKRPAEQEFYKQHHVQFTDNVTEVLSDPAVKLVTICLPPALHFAFAKRCLEAGKNVLVEKPFTSTVAEAKALFDLAAEHNLLVMPYQNRRFDGEFLALQQVLQVGYLGEPLELESHFDHFRPDPEVKQGAPEDGAFYGLGSHLVDQVVALFGRPQQVSYDIRAQQNPASTVDDYYDVSLFYPNFKATVKSSSLVAQPYPRFILHGTQGSFIKYGIDQQENDLKAGLTPAAAGFGEDSPKFFGELNYQNANGDWINKQLPTPRGDYGRVYDGLYESIIHGAAPLVSADEAITDLAILAAGFSQLSPSIYQLW
SIO_010081: LOOC260_RS11200
subclass of: SO_0000673
so part of: LOOC260_RS11200
location: 27641..28696
location: region:27641-28696:1
so has part: feature:27641-28696:1:exon

WP_041095637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27641-28696:1:exon

LOOC260_RS11205
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11205
old locus tag: LOOC260_200360
pseudo: true
so part of: sequence
location: 28793..>29095
location: region:28793-29095:1
so has part: feature:28793-29095:1:exon
subclass of: SO_0000010

position:28793:1
position: 28793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29095:1
position: 29095
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28793-29095:1:exon

LOOC260_RS11205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11205
old locus tag: LOOC260_200360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013355080.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
SIO_010081: LOOC260_RS11205
subclass of: SO_0000673
so part of: LOOC260_RS11205
location: 28793..>29095
location: region:28793-29095:1
so has part: feature:28793-29095:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28793-29095:1:exon

LOOC260_RS11210
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11210
old locus tag: LOOC260_200370
so part of: sequence
location: 29370..30590
location: region:29370-30590:1
so has part: feature:29370-30590:1:exon
subclass of: SO_0000010

position:29370:1
position: 29370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30590:1
position: 30590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29370-30590:1:exon

LOOC260_RS11210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11210
old locus tag: LOOC260_200370
inference: COORDINATES: protein motif:HMM:NF033550.5
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ISL3 family transposase
translation: MTCPKCSTVMSRNGYKSVMYQSAQNGTSLIFFKIKKQKYICKCCKNTELAELSDVRKGDHLFRDVKQIIAMQIEENMSMTTIAKINNVSSNTVIRSILGLACYIKPSFHYLSRNIAFDDFKSGKFAKSGYFLLLMNIETHQPIDVISDRGDHSLEKYFLRYSPAARAAVRTVTVDLFSPYRSTIQKVFPNAIIIADHFHVVVQAFKGLNQLRIKVMKSFKYGSPEYRQLNRFWKLIMKSESDLNRSDRYKRRNFKNLQLTDDEVVNRLLSLSEELRAAYNFYQDLIFIIHNQSSERLKTLLWPEDDKNSAILPQEMDAAIKTLRKHFEEIINSFKTKYCHFSTGPVEGCNNKIKVIKRTAYGFRNFYHFKIRILIAFKNSFYSKNFISLTKQQKTANSPTTEKLAA
SIO_010081: LOOC260_RS11210
subclass of: SO_0000673
so part of: LOOC260_RS11210
location: 29370..30590
location: region:29370-30590:1
so has part: feature:29370-30590:1:exon

WP_268872763.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29370-30590:1:exon

LOOC260_RS11215
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11215
old locus tag: LOOC260_200380
pseudo: true
so part of: sequence
location: <30642..31274
location: region:30642-31274:1
so has part: feature:30642-31274:1:exon
subclass of: SO_0000010

position:30642:1
position: 30642
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:31274:1
position: 31274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30642-31274:1:exon

LOOC260_RS11215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11215
old locus tag: LOOC260_200380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006499503.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS30 family transposase
SIO_010081: LOOC260_RS11215
subclass of: SO_0000673
so part of: LOOC260_RS11215
location: <30642..31274
location: region:30642-31274:1
so has part: feature:30642-31274:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30642-31274:1:exon

LOOC260_RS11220
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11220
old locus tag: LOOC260_200390
so part of: sequence
location: complement(31321..31665)
location: region:31321-31665:-1
so has part: feature:31321-31665:-1:exon
subclass of: SO_0000010

position:31321:-1
position: 31321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31665:-1
position: 31665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31321-31665:-1:exon

LOOC260_RS11220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11220
old locus tag: LOOC260_200390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010623286.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5388 domain-containing protein
translation: MANSLIRSNRNNTESSIPKPEKQAKASDFVNPAKDNPTNKEISSVTFNTNLKISNHTRNKLQAMSMIGYAENQRLSVETAIHSFYEQLSINEQKEFDLQVSTLESRDVKMKSKK
SIO_010081: LOOC260_RS11220
subclass of: SO_0000673
so part of: LOOC260_RS11220
location: complement(31321..31665)
location: region:31321-31665:-1
so has part: feature:31321-31665:-1:exon

WP_041095641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31321-31665:-1:exon

LOOC260_RS11225
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11225
old locus tag: LOOC260_200400
so part of: sequence
location: complement(31658..32467)
location: region:31658-32467:-1
so has part: feature:31658-32467:-1:exon
subclass of: SO_0000010

position:31658:-1
position: 31658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32467:-1
position: 32467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31658-32467:-1:exon

LOOC260_RS11225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11225
old locus tag: LOOC260_200400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010623287.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MTQVITFGNFKGGVGKTSNSTMVALELSNRGYQTLLVDLDPQGNATNLYLKTKLNISNEVGYFKKTLMASIEDGDLSNSLINIKEHLDLLASAPDFALYPRYMEKHHEYLDRVTAFNTLLNPLKEKYDYIIIDIPPTISLITDSALYASDYCLIIMQTHEHSFEGAEAFIKYIQDEIVNEYKAPRLELVGILAVLLQAGAPVDEATVSNAISEFGEDNIFKNKIHSMQRLKRYGITGITFGSKFDKRVFDVYKNVTDELLSRIEVIEHG
SIO_010081: LOOC260_RS11225
subclass of: SO_0000673
so part of: LOOC260_RS11225
location: complement(31658..32467)
location: region:31658-32467:-1
so has part: feature:31658-32467:-1:exon

WP_041095643.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31658-32467:-1:exon

LOOC260_RS11230
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11230
old locus tag: LOOC260_200410
so part of: sequence
location: 33398..33601
location: region:33398-33601:1
so has part: feature:33398-33601:1:exon
subclass of: SO_0000010

position:33398:1
position: 33398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33601:1
position: 33601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33398-33601:1:exon

LOOC260_RS11230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11230
old locus tag: LOOC260_200410
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEIRGLTYNYLKMFCQEYFGAEFPWEVDLGLLEEAKDQYILILLWSEFTHHVSSCPRVPEELMDIFH
SIO_010081: LOOC260_RS11230
subclass of: SO_0000673
so part of: LOOC260_RS11230
location: 33398..33601
location: region:33398-33601:1
so has part: feature:33398-33601:1:exon

WP_041095645.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33398-33601:1:exon

LOOC260_RS11235
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11235
pseudo: true
so part of: sequence
location: complement(33903..34789)
location: region:33903-34789:-1
so has part: feature:33903-34789:-1:exon
subclass of: SO_0000010

position:33903:-1
position: 33903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34789:-1
position: 34789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33903-34789:-1:exon

LOOC260_RS11235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11235
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002989480.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS30 family transposase
SIO_010081: LOOC260_RS11235
subclass of: SO_0000673
so part of: LOOC260_RS11235
location: complement(33903..34789)
location: region:33903-34789:-1
so has part: feature:33903-34789:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:33903-34789:-1:exon

LOOC260_RS12115
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12115
pseudo: true
so part of: sequence
location: <34894..35105
location: region:34894-35105:1
so has part: feature:34894-35105:1:exon
subclass of: SO_0000010

position:34894:1
position: 34894
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:35105:1
position: 35105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34894-35105:1:exon

LOOC260_RS12115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012552803.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid replication initiation protein
SIO_010081: LOOC260_RS12115
subclass of: SO_0000673
so part of: LOOC260_RS12115
location: <34894..35105
location: region:34894-35105:1
so has part: feature:34894-35105:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:34894-35105:1:exon

LOOC260_RS11240
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11240
old locus tag: LOOC260_200420
so part of: sequence
location: 35364..35645
location: region:35364-35645:1
so has part: feature:35364-35645:1:exon
subclass of: SO_0000010

position:35364:1
position: 35364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35645:1
position: 35645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35364-35645:1:exon

LOOC260_RS11240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11240
old locus tag: LOOC260_200420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MAVKEKKRVQVKIDKDLADDTEAILSELGLNPTTAINMFYKRIVANGALPFNASLSEEERANLRFLKATEGTPVTEFKDAKEVADWLNDPDED
SIO_010081: LOOC260_RS11240
subclass of: SO_0000673
so part of: LOOC260_RS11240
location: 35364..35645
location: region:35364-35645:1
so has part: feature:35364-35645:1:exon

WP_014564139.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35364-35645:1:exon

LOOC260_RS12405
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12405
old locus tag: LOOC260_200430
so part of: sequence
location: 35635..36141
location: region:35635-36141:1
so has part: feature:35635-36141:1:exon
subclass of: SO_0000010

position:35635:1
position: 35635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36141:1
position: 36141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35635-36141:1:exon

LOOC260_RS12405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12405
old locus tag: LOOC260_200430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002823700.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mRNA interferase PemK
translation: MRTNDLVSLYVSFVETNGGKSRPVLILRVSEQKVEAFKITSQYEKKSAYIKQQYYPIQDWQSAGLKKPSWVDLGNIYRFPKAGLNFKEIGHLSKLDQNKISDFTLDLKSKIRGKGQKIIQQRSSKRKHKESKAELTQRIQKQLKDFAKHNPEIKPKNNPENKNDRPSY
SIO_010081: LOOC260_RS12405
subclass of: SO_0000673
so part of: LOOC260_RS12405
location: 35635..36141
location: region:35635-36141:1
so has part: feature:35635-36141:1:exon

WP_041095650.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35635-36141:1:exon

LOOC260_RS11250
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11250
old locus tag: LOOC260_200440
so part of: sequence
location: complement(36131..36409)
location: region:36131-36409:-1
so has part: feature:36131-36409:-1:exon
subclass of: SO_0000010

position:36131:-1
position: 36131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36409:-1
position: 36409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36131-36409:-1:exon

LOOC260_RS11250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11250
old locus tag: LOOC260_200440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQYEKLVEQQARLKQKIDREDFKLRQSKYYENRQARKARSRRLIQKGALLEKYFQANNLSVEQTEELLKTFADYVNAHKPDKLKNDQPNN
SIO_010081: LOOC260_RS11250
subclass of: SO_0000673
so part of: LOOC260_RS11250
location: complement(36131..36409)
location: region:36131-36409:-1
so has part: feature:36131-36409:-1:exon

WP_015474680.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36131-36409:-1:exon

LOOC260_RS11255
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11255
old locus tag: LOOC260_200450
so part of: sequence
location: complement(36432..36659)
location: region:36432-36659:-1
so has part: feature:36432-36659:-1:exon
subclass of: SO_0000010

position:36432:-1
position: 36432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36659:-1
position: 36659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36432-36659:-1:exon

LOOC260_RS11255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11255
old locus tag: LOOC260_200450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012552807.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIGEIVMSQSNLEKQEAKLKALNQKIKDEKNKIEQRLGKQIISQANLDYANLSNDQIKLLAKQFSEFLKVKSVDH
SIO_010081: LOOC260_RS11255
subclass of: SO_0000673
so part of: LOOC260_RS11255
location: complement(36432..36659)
location: region:36432-36659:-1
so has part: feature:36432-36659:-1:exon

WP_082232462.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36432-36659:-1:exon

LOOC260_RS11260
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
gene: mobQ
locus tag: LOOC260_RS11260
old locus tag: LOOC260_200460
so part of: sequence
location: 36912..38975
location: region:36912-38975:1
so has part: feature:36912-38975:1:exon
subclass of: SO_0000010

position:36912:1
position: 36912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38975:1
position: 38975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36912-38975:1:exon

LOOC260_RS11260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
gene: mobQ
locus tag: LOOC260_RS11260
old locus tag: LOOC260_200460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016511122.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIFHMSFSNISAGKGRSAIAGASYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPEWASDREKLWNEVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNRPFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKINQWRHNWAVSVNQVLEQKNIPDRISEKSFIEEGIDDTPTQHEGINSKRHERKEFNQQVKNYRKSKAGYKNNQEKVINRGHLDSLSKHFSFNEKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVVDRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGFKLLMQQEKEAKIDLKYTLMIHSDSLESLEHVDKGLLEKYSPAEQQKITRAVKDLRTIMAVKQVIQTQYHEVLKRAFPKGDLDGLPLIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSTQEHQLGLAYLSGQLSLDQLENHNLQRVLKHDGTKQIFLGECKADPTIKTSQIEKIQKQLKEQQAKDDQYRKSQLAHYQPLNYKPVSPEYYLKTAFSDAIMAALYARDEDYQRQRQAQGLKEAEWEMTKKQRQHQTRNRHEDGGMHL
SIO_010081: LOOC260_RS11260
subclass of: SO_0000673
so part of: LOOC260_RS11260
location: 36912..38975
location: region:36912-38975:1
so has part: feature:36912-38975:1:exon

WP_041095659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36912-38975:1:exon

LOOC260_RS12580
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12580
pseudo: true
so part of: sequence
location: 39072..>40475
location: region:39072-40475:1
so has part: feature:39072-40475:1:exon
subclass of: SO_0000010

position:39072:1
position: 39072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40475:1
position: 40475
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39072-40475:1:exon

LOOC260_RS12580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002825295.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006265 - DNA topological change [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DNA topoisomerase
SIO_010081: LOOC260_RS12580
subclass of: SO_0000673
so part of: LOOC260_RS12580
location: 39072..>40475
location: region:39072-40475:1
so has part: feature:39072-40475:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:39072-40475:1:exon

LOOC260_RS11270
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11270
old locus tag: LOOC260_200490
so part of: sequence
location: complement(41183..41440)
location: region:41183-41440:-1
so has part: feature:41183-41440:-1:exon
subclass of: SO_0000010

position:41183:-1
position: 41183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41440:-1
position: 41440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41183-41440:-1:exon

LOOC260_RS11270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11270
old locus tag: LOOC260_200490
inference: COORDINATES: protein motif:HMM:NF013677.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MPYKKEFKQSLVEMHNQGRSYTDLSAEYGPSVDSIRNWVKLYAVHEVDGEKWTQADVNALQKENDKLREELEILKRAAVLLSKYN
SIO_010081: LOOC260_RS11270
subclass of: SO_0000673
so part of: LOOC260_RS11270
location: complement(41183..41440)
location: region:41183-41440:-1
so has part: feature:41183-41440:-1:exon

WP_041095661.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41183-41440:-1:exon

LOOC260_RS12135
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12135
pseudo: true
so part of: sequence
location: 41534..>41755
location: region:41534-41755:1
so has part: feature:41534-41755:1:exon
subclass of: SO_0000010

position:41534:1
position: 41534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41755:1
position: 41755
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41534-41755:1:exon

LOOC260_RS12135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011373852.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
SIO_010081: LOOC260_RS12135
subclass of: SO_0000673
so part of: LOOC260_RS12135
location: 41534..>41755
location: region:41534-41755:1
so has part: feature:41534-41755:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41534-41755:1:exon

LOOC260_RS11275
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11275
old locus tag: LOOC260_200510
so part of: sequence
location: complement(41792..42319)
location: region:41792-42319:-1
so has part: feature:41792-42319:-1:exon
subclass of: SO_0000010

position:41792:-1
position: 41792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42319:-1
position: 42319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41792-42319:-1:exon

LOOC260_RS11275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11275
old locus tag: LOOC260_200510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010491919.1
GO component: GO:0005886 - plasma membrane [Evidence IEA]
GO function: GO:0015225 - biotin transmembrane transporter activity [Evidence IEA]
GO process: GO:0015878 - biotin transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: biotin transporter BioY
translation: MNAKQLSLNATLLALLIILGMTPPIAVGLPVPIVLQNFGIFLIAGLLNTRSATLVIATFLTLTALGLPLLSGMRGGLPVMIGPTGGYLLGWLLTPISVAAVQRLLATKTVPSLWALLLGGMFVTDLAGTIWLTIFYHTPFTVALLSNLVYIPGDLIKIVACSVVLTAVNRAVSFK
SIO_010081: LOOC260_RS11275
subclass of: SO_0000673
so part of: LOOC260_RS11275
location: complement(41792..42319)
location: region:41792-42319:-1
so has part: feature:41792-42319:-1:exon

WP_041095663.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41792-42319:-1:exon

LOOC260_RS11280
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
gene: fabZ
locus tag: LOOC260_RS11280
old locus tag: LOOC260_200520
so part of: sequence
location: 42463..42909
location: region:42463-42909:1
so has part: feature:42463-42909:1:exon
subclass of: SO_0000010

position:42463:1
position: 42463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42909:1
position: 42909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42463-42909:1:exon

LOOC260_RS11280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
gene: fabZ
locus tag: LOOC260_RS11280
old locus tag: LOOC260_200520
EC number: 4.2.1.59
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014214630.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-hydroxyacyl-ACP dehydratase FabZ
translation: MAILSAQEIMELIPNRYPILFMDYVDELEPGESIVATKNVTINEEFFQGHFPGNPVMPGVLIIESLAQAASILILKSPEFAGKTAYLGAIKDARFHQIVRPGDVLKLHVAFTKRRSNMGVVHTEATVGDNVAAKADLTFIVAPNTASN
SIO_010081: LOOC260_RS11280
subclass of: SO_0000673
so part of: LOOC260_RS11280
location: 42463..42909
location: region:42463-42909:1
so has part: feature:42463-42909:1:exon

WP_041095665.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42463-42909:1:exon

LOOC260_RS11285
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11285
old locus tag: LOOC260_200530
so part of: sequence
location: 42922..43389
location: region:42922-43389:1
so has part: feature:42922-43389:1:exon
subclass of: SO_0000010

position:42922:1
position: 42922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43389:1
position: 43389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42922-43389:1:exon

LOOC260_RS11285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11285
old locus tag: LOOC260_200530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003559611.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MarR family transcriptional regulator
translation: MAEEKNNISKADFRFMNDALVDVYDHIMRIEEETLRKSTFRDISVKEIHLIHAITLHDHKTSTEVANELRLTKGTLTTNVKTLERKGYVKRINDEQDHRVARLTLTNKGKLLYRAHDAFHRQIVKSFIKGMDGNEVKVIKRALINLEDFLSDITQ
SIO_010081: LOOC260_RS11285
subclass of: SO_0000673
so part of: LOOC260_RS11285
location: 42922..43389
location: region:42922-43389:1
so has part: feature:42922-43389:1:exon

WP_041095667.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42922-43389:1:exon

LOOC260_RS11290
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11290
old locus tag: LOOC260_200540
so part of: sequence
location: 43400..44377
location: region:43400-44377:1
so has part: feature:43400-44377:1:exon
subclass of: SO_0000010

position:43400:1
position: 43400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44377:1
position: 44377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43400-44377:1:exon

LOOC260_RS11290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11290
old locus tag: LOOC260_200540
EC number: 2.3.1.180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010022514.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: beta-ketoacyl-ACP synthase III
translation: MTFNLITTARAVPDQIITNSDLAKIMPTSDEWIKQRTGIERRHLASTETTESLCIDVAQQLVQANSIGPKQIDLIVVATMSPTYSMPSVAATVQGAIGAENAATLDVNAACTGFVYAMAVAHDMAVAKGYQNVIVIGGEVMSKYVNWQDRSTAVLFGDGAAGVLLALNEDGQDHYLGDAFKTFGEKGRSLMADFRPNNSPFAKPVEADSYLTMDGHQIYNFVIKKAPVVIEEVLQKTGLTLPDIDWVVFHQANARIIQQLSKKLGLTAQQCPINIDEYGNVAAASEPLVLNDLVASNQLKPGDKVLLCGFGGGLTIGASIFDYYN
SIO_010081: LOOC260_RS11290
subclass of: SO_0000673
so part of: LOOC260_RS11290
location: 43400..44377
location: region:43400-44377:1
so has part: feature:43400-44377:1:exon

WP_041095669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43400-44377:1:exon

LOOC260_RS11295
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11295
old locus tag: LOOC260_200550
so part of: sequence
location: 44403..44648
location: region:44403-44648:1
so has part: feature:44403-44648:1:exon
subclass of: SO_0000010

position:44403:1
position: 44403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44648:1
position: 44648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44403-44648:1:exon

LOOC260_RS11295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11295
old locus tag: LOOC260_200550
inference: COORDINATES: protein motif:HMM:NF012759.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphopantetheine-binding protein
translation: MSKEEIIAKIMNVLQQDDSMEGKDITPDMSFKQEMNLDSLDVFELVNEIEDEFEIEIAPDKSLDTVNQVADYVQKQLAAKE
SIO_010081: LOOC260_RS11295
subclass of: SO_0000673
so part of: LOOC260_RS11295
location: 44403..44648
location: region:44403-44648:1
so has part: feature:44403-44648:1:exon

WP_041095671.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44403-44648:1:exon

LOOC260_RS11300
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11300
old locus tag: LOOC260_200560
so part of: sequence
location: 44652..45554
location: region:44652-45554:1
so has part: feature:44652-45554:1:exon
subclass of: SO_0000010

position:44652:1
position: 44652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45554:1
position: 45554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44652-45554:1:exon

LOOC260_RS11300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11300
old locus tag: LOOC260_200560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014082430.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ACP S-malonyltransferase
translation: MAKTAYLFAGQGAQTLGMGQDLYREEPSYRQTVTQASDILGINLADPEVAAAPENTQVAILTMSYGIWRLIAPTAATPVGLVGLSLGEYSALVAAGSLSFEDGLRLVADRSRYMAAAGHETPGKMAAVLTDQQTIVQELCDKIDGVYIANYNTLNQLVVGGTPEAVKQLKQALKDHKIRVVPLKVAVSSHTPLMASASEKLGQRLETVAFTAPKWPVWSNTTGQPFAVEHLAATLVDQLVAPTHFYDDFRGLTAAGADQFVEIGPGHVLSGFAKQIAPAAKRYQINDMTTLNAVRSELGW
SIO_010081: LOOC260_RS11300
subclass of: SO_0000673
so part of: LOOC260_RS11300
location: 44652..45554
location: region:44652-45554:1
so has part: feature:44652-45554:1:exon

WP_041095673.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44652-45554:1:exon

LOOC260_RS11305
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
gene: fabG
locus tag: LOOC260_RS11305
old locus tag: LOOC260_200570
so part of: sequence
location: 45561..46280
location: region:45561-46280:1
so has part: feature:45561-46280:1:exon
subclass of: SO_0000010

position:45561:1
position: 45561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46280:1
position: 46280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45561-46280:1:exon

LOOC260_RS11305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
gene: fabG
locus tag: LOOC260_RS11305
old locus tag: LOOC260_200570
EC number: 1.1.1.100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012212322.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-oxoacyl-ACP reductase FabG
translation: MADGVVLITGGNRGIGLAIAERLAGDGENVVITTRHELPESQLAALDALGIHTVVGDVTDEAEAQRMVNDAVKHGEWLRGLINNAGINRDKLMTRMSTEDFNAVLQTNLVGAFNMSKPALKLMQKQRQGSIIHMASVVGLTGNVGQANYAASKAGLIGLMKTIAKEGGLRQVRSNAIAPGMVETDMTDALSDKTKEAILAEIPAKRFAKPAEIADVCAFLLNNEYVTGQVITIDGGLTL
SIO_010081: LOOC260_RS11305
subclass of: SO_0000673
so part of: LOOC260_RS11305
location: 45561..46280
location: region:45561-46280:1
so has part: feature:45561-46280:1:exon

WP_041095675.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:45561-46280:1:exon

LOOC260_RS11310
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
gene: fabF
locus tag: LOOC260_RS11310
old locus tag: LOOC260_200580
so part of: sequence
location: 46290..47510
location: region:46290-47510:1
so has part: feature:46290-47510:1:exon
subclass of: SO_0000010

position:46290:1
position: 46290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47510:1
position: 47510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46290-47510:1:exon

LOOC260_RS11310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
gene: fabF
locus tag: LOOC260_RS11310
old locus tag: LOOC260_200580
EC number: 2.3.1.179
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003625246.1
GO function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: beta-ketoacyl-ACP synthase II
translation: MERVVVTGMGAVTPLGNDAKTFLNGVADSRVGIAPITKFTADTGITVAGEVKDFEATKRLSAKTAKRMDLFSQYALYSAIEAMENAGLEPDNVVSEDFGVIYGSGIGGLTTIQEQVIKMHDKGPKRVSPLFVSNSIINMAAGNLSIYFKAENISEAVVTACASATNAIGDAFEQIKLGRAQVMMTGGSEASVNEIGIAGFAALTALSKSTDPLKASMPFDVNRNGFVMGEGGATLILESLTHARARNAPILAEIVGYGRTSDAYHVTAPDPSGKGAKRAMSQAISEAGIKPKDVGYINAHGTATKANDAGEARAIADLFGQDVLVSSTKGMTGHLLGAAGAIEAVATIGALNGQLPQNVGVYDQDPETPVTLVNADNAHQQVNYALSNSFGFGGHNAVIAFKRWEG
SIO_010081: LOOC260_RS11310
subclass of: SO_0000673
so part of: LOOC260_RS11310
location: 46290..47510
location: region:46290-47510:1
so has part: feature:46290-47510:1:exon

WP_041095677.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46290-47510:1:exon

LOOC260_RS11315
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11315
old locus tag: LOOC260_200590
so part of: sequence
location: 47513..47938
location: region:47513-47938:1
so has part: feature:47513-47938:1:exon
subclass of: SO_0000010

position:47513:1
position: 47513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47938:1
position: 47938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47513-47938:1:exon

LOOC260_RS11315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11315
old locus tag: LOOC260_200590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010738136.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
translation: MNEQEIERLVDKFERSSLNEMQISDNNFKLLLTKPHHSNAANSAAPVATSAPVQTAEAPTEDDAVVPAPLVGLVYLAAQPGKPVFKSVGDQVKAGDVVCLIEAMKVVNEVKSPYDGILREVLVEDGSLVEYDQPLFRIEKN
SIO_010081: LOOC260_RS11315
subclass of: SO_0000673
so part of: LOOC260_RS11315
location: 47513..47938
location: region:47513-47938:1
so has part: feature:47513-47938:1:exon

WP_041095678.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47513-47938:1:exon

LOOC260_RS11320
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11320
old locus tag: LOOC260_200600
so part of: sequence
location: 47940..48356
location: region:47940-48356:1
so has part: feature:47940-48356:1:exon
subclass of: SO_0000010

position:47940:1
position: 47940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48356:1
position: 48356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47940-48356:1:exon

LOOC260_RS11320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11320
old locus tag: LOOC260_200600
EC number: 4.2.1.-
inference: COORDINATES: protein motif:HMM:NF019589.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-hydroxyacyl-ACP dehydratase FabZ family protein
translation: MDIKDVIPQRPPFLFIDEIKAVEPGVGADTTKLVTINEWYFRGQPNDKVAPMFMLLEMMAQTGALAILSDQAAGKNVLFGGVKAAEYTVAVHPGDQLDCHVALLKQRHGIGIGSGEIKVDGQVVFSATLIFAIVETEE
SIO_010081: LOOC260_RS11320
subclass of: SO_0000673
so part of: LOOC260_RS11320
location: 47940..48356
location: region:47940-48356:1
so has part: feature:47940-48356:1:exon

WP_041095680.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47940-48356:1:exon

LOOC260_RS11325
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11325
old locus tag: LOOC260_200610
so part of: sequence
location: 48362..49735
location: region:48362-49735:1
so has part: feature:48362-49735:1:exon
subclass of: SO_0000010

position:48362:1
position: 48362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49735:1
position: 49735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48362-49735:1:exon

LOOC260_RS11325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11325
old locus tag: LOOC260_200610
EC number: 6.4.1.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011475767.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acetyl-CoA carboxylase biotin carboxylase subunit
translation: MFKKVLVANRGEIAVQVIRNLHEMAIEAVAVYSTADRDAYFVELADEAVCIGAPLPEQSYLDMKSIVTVACLLGCDAVHPGYGFLSENAEFVVLCQEVGLTFIGPQSETVALMGDKASAREVMQAAGVPVIPGSDGTISDLNAALTLAEKIGYPVMLKSAAGGGGKGMRRVDDKAALTVAFEDVKRESQLSFGETGIYLEKVIEHAKHIEMQVIADDFGHVVYFPERDCSPQRHHQKLVEESPSSLISAERRAELGAIVVKACQSVNYRNTGTFEFLMDPDQRFYFMEMNTRLQVEHTVSEEVTGVEMIKAQVLVAAHQPLPFDQADVQVTQFAVECRINAENPAAQFMPAAGDVTGLFLPVGTHGVRIDTGLREVDTISPYYDSMIAKLVTSGSNRAAALKKMQRLLTELKVTGLTTNQAFLVDLVASPEFVADEVTIESVEQTILPRWLDDASKV
SIO_010081: LOOC260_RS11325
subclass of: SO_0000673
so part of: LOOC260_RS11325
location: 48362..49735
location: region:48362-49735:1
so has part: feature:48362-49735:1:exon

WP_041095682.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:48362-49735:1:exon

LOOC260_RS11330
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11330
old locus tag: LOOC260_200620
so part of: sequence
location: 49716..50549
location: region:49716-50549:1
so has part: feature:49716-50549:1:exon
subclass of: SO_0000010

position:49716:1
position: 49716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50549:1
position: 50549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49716-50549:1:exon

LOOC260_RS11330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11330
old locus tag: LOOC260_200620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011667652.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acetyl-CoA carboxylase carboxyltransferase subunit beta
translation: MMPAKFNGLDKSTLAKRMDKIPSDLYVTCPYCKQSVYHQKLGPFQECPHCGYGFRLGAAARLKIVTDKFEAFDAELAVDPALVDDQYAEKLTKAKQHSGLPESVVTGMATIDSLQVAIGVMDSNFMMGSLGSATGEKLTRLFEEATRRRLPVVLYTASGGARMQEGLHSLMQMAKVTQAVTAHGEAGLCYLVVLTDPTTGGVTASFAMEADITLAEPHALIGFTGRRVIESTLHIKPPADFQRAETLLANGFVDDIVARSAQKATIVSLLKLSQGGA
SIO_010081: LOOC260_RS11330
subclass of: SO_0000673
so part of: LOOC260_RS11330
location: 49716..50549
location: region:49716-50549:1
so has part: feature:49716-50549:1:exon

WP_041095684.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49716-50549:1:exon

LOOC260_RS11335
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
gene: accA
locus tag: LOOC260_RS11335
old locus tag: LOOC260_200630
so part of: sequence
location: 50550..51320
location: region:50550-51320:1
so has part: feature:50550-51320:1:exon
subclass of: SO_0000010

position:50550:1
position: 50550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51320:1
position: 51320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50550-51320:1:exon

LOOC260_RS11335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
gene: accA
locus tag: LOOC260_RS11335
old locus tag: LOOC260_200630
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003640418.1
GO component: GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO function: GO:0016743 - carboxyl- or carbamoyltransferase activity [Evidence IEA]
GO process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carboxyltransferase subunit alpha
translation: MSENAAYDIVQAARSQSKIDSYTLINGVFSDFHELHGDRLHGDDSALIGGVGRLNGRPVTILATNKGRDMAEGQATHFGGVSPDGYRKAIRLMKQSTKFNRPIVALINTPGAYPGVEAEYGGQGEAIARSIQTGLGQPVPYLSLIFGEAGSGGALALATGDEVWMLEKSTYSVVSPEGYASILWRDGKLADQAAAKMKLTPSELLAAGFVDRVLPEVTTPETLSALTTQLDLKITALAKLPVAELMAARRQRYRQF
SIO_010081: LOOC260_RS11335
subclass of: SO_0000673
so part of: LOOC260_RS11335
location: 50550..51320
location: region:50550-51320:1
so has part: feature:50550-51320:1:exon

WP_041095686.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50550-51320:1:exon

LOOC260_RS11340
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
gene: fabI
locus tag: LOOC260_RS11340
old locus tag: LOOC260_200640
so part of: sequence
location: 51345..52100
location: region:51345-52100:1
so has part: feature:51345-52100:1:exon
subclass of: SO_0000010

position:51345:1
position: 51345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52100:1
position: 52100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51345-52100:1:exon

LOOC260_RS11340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
gene: fabI
locus tag: LOOC260_RS11340
old locus tag: LOOC260_200640
EC number: 1.3.1.9
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008842116.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: enoyl-ACP reductase FabI
translation: MDVVTGKTIVIMGVANKSSIAWGCAQAIQENGGQVILTYQNERIKRSLERFVPEEMPMIQCDVSDEETVVQAFTTIKDQYGHVDGLIHAIAYADKESLENPVLQISKEGYNLAQDVSAYSFILVSRLATEIFPDLTSLVTLTYFGSTHVIPNYNIMGVAKAALEANVRYLAKELGDRHVRVNAISAGAVKTLAVTGVKNSSTLLKMSQERTVDGVSVTKSEIGNVATFLLSDLSTAITGDVIYADKGVHLI
SIO_010081: LOOC260_RS11340
subclass of: SO_0000673
so part of: LOOC260_RS11340
location: 51345..52100
location: region:51345-52100:1
so has part: feature:51345-52100:1:exon

WP_041095688.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51345-52100:1:exon

LOOC260_RS11345
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11345
old locus tag: LOOC260_200650
so part of: sequence
location: 52110..52919
location: region:52110-52919:1
so has part: feature:52110-52919:1:exon
subclass of: SO_0000010

position:52110:1
position: 52110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52919:1
position: 52919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52110-52919:1:exon

LOOC260_RS11345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11345
old locus tag: LOOC260_200650
EC number: 6.3.4.15
inference: COORDINATES: protein motif:HMM:TIGR00121.1
GO function: GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
GO process: GO:0036211 - protein modification process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: biotin--[acetyl-CoA-carboxylase] ligase
translation: MRDDLKATVIRENLPSQWLVDPRVTVLPSVDSTNTYAKQRLNHRPEIVVAERQTAGKGRFHHRFVSPAQSGIYLTIVWPLNDQADGGLEAARAAVAVVQAVAAVTGLELAIKWPNDLVFRHQKRGGLLIEQVQTSAGWQLLIGIGLNLAATDVPALPVSLTLADTPNQQWTRNQVIAAIYGQLTALFQQPAATWLAVYRQSVLWVGERVQFNVSGQAMIGILQGFDPHNRLQVQPQTGPLLVLEAERVSELMPLDQDYQKPNEPSNDFT
SIO_010081: LOOC260_RS11345
subclass of: SO_0000673
so part of: LOOC260_RS11345
location: 52110..52919
location: region:52110-52919:1
so has part: feature:52110-52919:1:exon

WP_041095690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52110-52919:1:exon

LOOC260_RS12585
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12585
old locus tag: LOOC260_200660
so part of: sequence
location: 53078..53446
location: region:53078-53446:1
so has part: feature:53078-53446:1:exon
subclass of: SO_0000010

position:53078:1
position: 53078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53446:1
position: 53446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53078-53446:1:exon

LOOC260_RS12585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12585
old locus tag: LOOC260_200660
inference: COORDINATES: protein motif:HMM:NF016174.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFDEIGQIIFNHEIVANASDFNMGIEVETIRVDAASKLTTEPYPKLLGDQRQNHFIKTEYPLIVYIYSYIIPLLNGLYESEEPDFTEQLNSYSKDLAKEIILDLIGATGIDIQEFDKLAMKL
SIO_010081: LOOC260_RS12585
subclass of: SO_0000673
so part of: LOOC260_RS12585
location: 53078..53446
location: region:53078-53446:1
so has part: feature:53078-53446:1:exon

WP_041095692.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53078-53446:1:exon

LOOC260_RS11355
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11355
old locus tag: LOOC260_200670
so part of: sequence
location: complement(53909..54124)
location: region:53909-54124:-1
so has part: feature:53909-54124:-1:exon
subclass of: SO_0000010

position:53909:-1
position: 53909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54124:-1
position: 54124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53909-54124:-1:exon

LOOC260_RS11355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11355
old locus tag: LOOC260_200670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013727994.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CsbD family protein
translation: MSLDDKIDSTKDKVSGKAKEVEGKVTNDKAREAEGKGQGILGKAKDKLSDAKDAVKDTVDNVKEKLDKDDK
SIO_010081: LOOC260_RS11355
subclass of: SO_0000673
so part of: LOOC260_RS11355
location: complement(53909..54124)
location: region:53909-54124:-1
so has part: feature:53909-54124:-1:exon

WP_003680381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53909-54124:-1:exon

LOOC260_RS12455
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12455
old locus tag: LOOC260_200680
so part of: sequence
location: complement(54322..54462)
location: region:54322-54462:-1
so has part: feature:54322-54462:-1:exon
subclass of: SO_0000010

position:54322:-1
position: 54322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54462:-1
position: 54462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54322-54462:-1:exon

LOOC260_RS12455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12455
old locus tag: LOOC260_200680
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003631123.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDVLKSVFKFMIASTLIVGGVLIGGTVLAAKKVDGIGDTLQQKLHG
SIO_010081: LOOC260_RS12455
subclass of: SO_0000673
so part of: LOOC260_RS12455
location: complement(54322..54462)
location: region:54322-54462:-1
so has part: feature:54322-54462:-1:exon

WP_003681696.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54322-54462:-1:exon

LOOC260_RS11360
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11360
old locus tag: LOOC260_200690
so part of: sequence
location: complement(54474..54725)
location: region:54474-54725:-1
so has part: feature:54474-54725:-1:exon
subclass of: SO_0000010

position:54474:-1
position: 54474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54725:-1
position: 54725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54474-54725:-1:exon

LOOC260_RS11360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11360
old locus tag: LOOC260_200690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013439000.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GlsB/YeaQ/YmgE family stress response membrane protein
translation: MGLIWSLIVGAIIGAIAGAITNRGAAMGWIANIVAGLIGAWIGQGLLGTWGPSLAGMALIPSIIGAIILVLIVSLVVGRTSKK
SIO_010081: LOOC260_RS11360
subclass of: SO_0000673
so part of: LOOC260_RS11360
location: complement(54474..54725)
location: region:54474-54725:-1
so has part: feature:54474-54725:-1:exon

WP_003680323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54474-54725:-1:exon

LOOC260_RS11365
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11365
old locus tag: LOOC260_200700
so part of: sequence
location: complement(54740..55282)
location: region:54740-55282:-1
so has part: feature:54740-55282:-1:exon
subclass of: SO_0000010

position:54740:-1
position: 54740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55282:-1
position: 55282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54740-55282:-1:exon

LOOC260_RS11365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11365
old locus tag: LOOC260_200700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016371047.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Asp23/Gls24 family envelope stress response protein
translation: MQNGTPSEKTTTNEKSGIKGNLTFDDKVIQKIIGIALSEVDGLLTVDGGFFANVAEKLVNTSDVTSGIDVEVGKKQVAVDLDIVAEYGIDISKLYDKIKNVIVREVKNMTDLEVIEVNVNVVDVKTKEQHEKDSTSLQDRVSDATDKTKEAVSKGANKSKETLSDSVDKVTSDNKSSRVN
SIO_010081: LOOC260_RS11365
subclass of: SO_0000673
so part of: LOOC260_RS11365
location: complement(54740..55282)
location: region:54740-55282:-1
so has part: feature:54740-55282:-1:exon

WP_041095698.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54740-55282:-1:exon

LOOC260_RS11370
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11370
old locus tag: LOOC260_200710
so part of: sequence
location: complement(55310..55495)
location: region:55310-55495:-1
so has part: feature:55310-55495:-1:exon
subclass of: SO_0000010

position:55310:-1
position: 55310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55495:-1
position: 55495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55310-55495:-1:exon

LOOC260_RS11370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11370
old locus tag: LOOC260_200710
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003681705.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2273 domain-containing protein
translation: MTELIKAYFWPLIGGIIGLLLAVLIITFGFLKTLFVLIFMVIGITAGYYIQKTGILTNVFK
SIO_010081: LOOC260_RS11370
subclass of: SO_0000673
so part of: LOOC260_RS11370
location: complement(55310..55495)
location: region:55310-55495:-1
so has part: feature:55310-55495:-1:exon

WP_041095700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55310-55495:-1:exon

LOOC260_RS11375
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
gene: amaP
locus tag: LOOC260_RS11375
so part of: sequence
location: complement(55507..56067)
location: region:55507-56067:-1
so has part: feature:55507-56067:-1:exon
subclass of: SO_0000010

position:55507:-1
position: 55507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56067:-1
position: 56067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55507-56067:-1:exon

LOOC260_RS11375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
gene: amaP
locus tag: LOOC260_RS11375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010493334.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alkaline shock response membrane anchor protein AmaP
translation: MRFIFKALIVVVIILAFPLSIVLVFKNWSTAIGTSTPMQLKFDWLDQYEPIYLFWSGIILAAVLIVLLIITLFWPRSQSLYLHQKSDGQVTISKKAIEHFALSALQHEPFIGNPKVSAKLSRKRITLKISGDLLNSVNAKKQTANFLNQLKKDLRICLGISEQKKIKIRLVDFNESDANVHQSRVV
SIO_010081: LOOC260_RS11375
subclass of: SO_0000673
so part of: LOOC260_RS11375
location: complement(55507..56067)
location: region:55507-56067:-1
so has part: feature:55507-56067:-1:exon

WP_041095702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55507-56067:-1:exon

LOOC260_RS11380
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11380
old locus tag: LOOC260_200720
so part of: sequence
location: 56265..56849
location: region:56265-56849:1
so has part: feature:56265-56849:1:exon
subclass of: SO_0000010

position:56265:1
position: 56265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56849:1
position: 56849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56265-56849:1:exon

LOOC260_RS11380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11380
old locus tag: LOOC260_200720
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014567995.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MAKIGYARVSSKEQHLDRQLAALKDVDKLFTDKLSGANTNRPELQKMLAYIREGDIVMVTELDRLGRNNQDLTKIMNSIQNKGATLDVLNLPSMTGIADPNLRQLMTNLIIELYKYQAESERKRIIERQQQGIALAKQQGKYHGRKPQYAKDDPRLQHAFKLYQTGMSDVDVARNIGIKRTTFIRYRKKFNIQR
SIO_010081: LOOC260_RS11380
subclass of: SO_0000673
so part of: LOOC260_RS11380
location: 56265..56849
location: region:56265-56849:1
so has part: feature:56265-56849:1:exon

WP_041095704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56265-56849:1:exon

LOOC260_RS11385
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11385
old locus tag: LOOC260_200730
so part of: sequence
location: 57209..58414
location: region:57209-58414:1
so has part: feature:57209-58414:1:exon
subclass of: SO_0000010

position:57209:1
position: 57209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58414:1
position: 58414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57209-58414:1:exon

LOOC260_RS11385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11385
old locus tag: LOOC260_200730
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002825823.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MSDLDQTNSYRYVIVGGGVVAGYAIKGIRQEDSEGEILIISQEADVPYERPALSKKLWLDDEFTEENIQIGAENYPNVTFKFKTTVTAINRQDKVITLADSEQIKYEQLLLATGGEPRQIQGPSDPHVLVFRQWSDYRKLRKFSGPNKRVVIIGGGYVGTELASSLTQNETEVTMIFPEKALGEGKFPESIRTEYEATFKRNGVTLMSGQFVQSYQRQGDHLTLLTKDGTVIAADTIIVGLGVTPRISLAEDSCLDLADGGVKVNEYLNTSDPAIWSAGDIASYPDHILGRQRIEHVDHARLSGELVGRNMAGAHMSYQHTPYFYSMIFDISWQAIGNIDPKLQLIFDRRTHGSLVYFIDTDKLVGVLVWNVKVNLDDVRALLANAPATDDLVGSIREKKA
SIO_010081: LOOC260_RS11385
subclass of: SO_0000673
so part of: LOOC260_RS11385
location: 57209..58414
location: region:57209-58414:1
so has part: feature:57209-58414:1:exon

WP_002825823.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57209-58414:1:exon

LOOC260_RS11390
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11390
old locus tag: LOOC260_200740
so part of: sequence
location: 58530..59906
location: region:58530-59906:1
so has part: feature:58530-59906:1:exon
subclass of: SO_0000010

position:58530:1
position: 58530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59906:1
position: 59906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58530-59906:1:exon

LOOC260_RS11390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11390
old locus tag: LOOC260_200740
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011668997.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MSKTKVIVVGASHGGHQSVLELTHKYSNLDIKLFEAGDFISFMSCGMELYLENSVTSINDVRNFKPADLEKFGTEVYANHEVTKINPENKQVTVKDLRSGKIQSYDYDKLILSSGVTPNDLPVPGHELKNVYSMRGKDWAEKIKAKLSDPDVKNITVIGAGYIGVEAAEASIKAGKNVTLIDMINRPLGNYLDTELTDILSKELTSKGVQVVTGAKIECYEGTESVSAVKTNDAEYPSDLIIQAVGVKPNTDWLKGTVELDKRGWIKTDKYLRTNLPDVYAIGDAVLAYSIPAQRNMPIALATVARREARYVVEHIFENTPSMPFSGVVGSSALSVFDYHFATSGLNMTTAQKADIKINTSFYKDTLRPAYVPMEKGNTEVYVELDYNPNTHQLLGGAVLSTYDITAQGNVISLAIQQGLKLEDLAEADFFFQPGFDRQWSLLNLAAQRALGELEFTK
SIO_010081: LOOC260_RS11390
subclass of: SO_0000673
so part of: LOOC260_RS11390
location: 58530..59906
location: region:58530-59906:1
so has part: feature:58530-59906:1:exon

WP_024855732.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58530-59906:1:exon

LOOC260_RS11395
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11395
old locus tag: LOOC260_200750
so part of: sequence
location: complement(60126..60872)
location: region:60126-60872:-1
so has part: feature:60126-60872:-1:exon
subclass of: SO_0000010

position:60126:-1
position: 60126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60872:-1
position: 60872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60126-60872:-1:exon

LOOC260_RS11395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11395
old locus tag: LOOC260_200750
inference: COORDINATES: protein motif:HMM:NF033516.0
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MRDNFLTGRVQYWYNQHHQSIGSTKILSNLRKDPAVTEQVTLKQVKRIMSKLGIRCQVHQKKHSRIKQQEQYLQDNVLNQRFGVNQPNQVWLADSTELTYGVNGQYKVRLSGALDLYGRHLIAHKLSETETSKAKVQVFQRAFNFAGDVHPVVHTDRGSACTSGTFNNFLAQHEVTRSMSRPGTPYDNAPMERWWNEFKLRWIDRHAKPVTYKELVALVEEGINYFNQLDRSPARNDLTPAEHWNEAV
SIO_010081: LOOC260_RS11395
subclass of: SO_0000673
so part of: LOOC260_RS11395
location: complement(60126..60872)
location: region:60126-60872:-1
so has part: feature:60126-60872:-1:exon

WP_120769734.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60126-60872:-1:exon

LOOC260_RS11400
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11400
old locus tag: LOOC260_200760
so part of: sequence
location: 60962..61591
location: region:60962-61591:1
so has part: feature:60962-61591:1:exon
subclass of: SO_0000010

position:60962:1
position: 60962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61591:1
position: 61591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60962-61591:1:exon

LOOC260_RS11400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11400
old locus tag: LOOC260_200760
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003561734.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKTTKIGYARVSTREQNLARQIEQLQAAGVTKIFQEKLSGKNAARPQLQAMLNYLRDDDEVIVLSLDRLGRNSADLTEIMEAIRHKGATLNILNLPSFNSIENPNLRNLITNIIIKLYKYMTQEERETIKVRQRQGIEIAKRQGKYHGKVREYGPHSPNRQKRFIYKEACRLLTRREQGEELTKRQIARMLGIAPVTLYRIEKYRAEES
SIO_010081: LOOC260_RS11400
subclass of: SO_0000673
so part of: LOOC260_RS11400
location: 60962..61591
location: region:60962-61591:1
so has part: feature:60962-61591:1:exon

WP_041095713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60962-61591:1:exon

LOOC260_RS11405
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
gene: rpiA
locus tag: LOOC260_RS11405
old locus tag: LOOC260_200770
so part of: sequence
location: complement(62200..62913)
location: region:62200-62913:-1
so has part: feature:62200-62913:-1:exon
subclass of: SO_0000010

position:62200:-1
position: 62200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62913:-1
position: 62913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62200-62913:-1:exon

LOOC260_RS11405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
gene: rpiA
locus tag: LOOC260_RS11405
old locus tag: LOOC260_200770
EC number: 5.3.1.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003554903.1
GO function: GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO process: GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribose-5-phosphate isomerase RpiA
translation: MNTELQNKLKKTAAVKAADYVKDDMIVGLGSGSTVTMLVDELGRQVQEEGLKFTGVSTSISTAKQAKSLGIKIVDLDSIDTIDLTIDGADQVDSDFNGIKGGGGNLLWEKIVAANSKKLVWIVDKSKVVDRIGAFPLAVDVEPFGSHHVLKKFSDAGFNPVVRTDKDGKVFKTDSNNIILDLHLHEINNPDKLADTLINTVGVVEHGLFLNAVNEVVVGKEGAPQILINSKVHPSYQ
SIO_010081: LOOC260_RS11405
subclass of: SO_0000673
so part of: LOOC260_RS11405
location: complement(62200..62913)
location: region:62200-62913:-1
so has part: feature:62200-62913:-1:exon

WP_029508455.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:62200-62913:-1:exon

LOOC260_RS12145
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12145
so part of: sequence
location: 63498..64296
location: region:63498-64296:1
so has part: feature:63498-64296:1:exon
subclass of: SO_0000010

position:63498:1
position: 63498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64296:1
position: 64296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63498-64296:1:exon

LOOC260_RS12145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013727908.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MQHFSHHYQSDISRQQFDLIRQDLEASRKRTHPKHIDPYDIFCAMLYVLKNGCTWRDLPADFPKWSTVYYYWMNWSKAPTPDKPALLTQVLKKIVADRRLRQGRSARTSFVILDAQSIKNTATAENKGYDGGKKISGIKRHLAVDVNGFPQAIHITRTNITDRDGAIALVTLNLEQFKLVRTMVVDSGYTGQNFANEISSLTSAKVIVVKRNELHQFSVIPQRWLIERSFSWLGNYHRLWRNCERKLNTSLMMVSLAFIRLLLKRY
SIO_010081: LOOC260_RS12145
subclass of: SO_0000673
so part of: LOOC260_RS12145
location: join(63498..63772,63771..64296)
location: region:63498-64296:1
so has part: feature:63498-63772:1:exon
so has part: feature:63771-64296:1:exon

WP_156406648.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:63498-63772:1:exon

position:63772:1
position: 63772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:63771-64296:1:exon

position:63771:1
position: 63771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOOC260_RS12150
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12150
so part of: sequence
location: complement(64316..65103)
location: region:64316-65103:-1
so has part: feature:64316-65103:-1:exon
subclass of: SO_0000010

position:64316:-1
position: 64316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65103:-1
position: 65103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64316-65103:-1:exon

LOOC260_RS12150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013727908.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS5 family transposase
translation: MKNYPSNITRQQFELIRPALENFRKRTKPRKYDLYEVFCAVLYVLKTGCQWRQVPGDFPEWRSVYNYYKIWSTKAEPTADSLLEQVFKKIVIARRTYQGRSALTSFIIVDAQSVKNTATAENKGYDAGKKISGIKRHLAVDINGFPQAIHMTRANVSDRDGASAMIALHAMHLRQVQNVLVDGGYSGVNFQLDVASNLNATVQVAKRNELHRFEVMPQRWVVERSFSWLENCRRLWKNCERQLTTSLQMVVLAFLALLLKRF
SIO_010081: LOOC260_RS12150
subclass of: SO_0000673
so part of: LOOC260_RS12150
location: complement(join(64316..64845,64845..65103))
location: region:64316-65103:-1
so has part: feature:64845-65103:-1:exon
so has part: feature:64316-64845:-1:exon

WP_080487858.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:64845-65103:-1:exon

position:64845:-1
position: 64845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:64316-64845:-1:exon

LOOC260_RS11425
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11425
old locus tag: LOOC260_200800
pseudo: true
so part of: sequence
location: <65132..65971
location: region:65132-65971:1
so has part: feature:65132-65971:1:exon
subclass of: SO_0000010

position:65132:1
position: 65132
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:65971:1
position: 65971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65132-65971:1:exon

LOOC260_RS11425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11425
old locus tag: LOOC260_200800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010625604.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replication initiation protein
SIO_010081: LOOC260_RS11425
subclass of: SO_0000673
so part of: LOOC260_RS11425
location: <65132..65971
location: region:65132-65971:1
so has part: feature:65132-65971:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:65132-65971:1:exon

LOOC260_RS11430
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11430
old locus tag: LOOC260_200810
so part of: sequence
location: 65964..66536
location: region:65964-66536:1
so has part: feature:65964-66536:1:exon
subclass of: SO_0000010

position:65964:1
position: 65964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66536:1
position: 66536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65964-66536:1:exon

LOOC260_RS11430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11430
old locus tag: LOOC260_200810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020090467.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HTH domain-containing protein
translation: MPKTIRELADELGVSKQAIWQKIKRDASIDLRQFTSTKGNTVYVDVDGQKAIKAMFSNNSSTRYRQQKDDVDDNKKDAVDGQDEVKFLRNLVSEIQSEKKELHKLLDQQQRLALQDKQLLEEYKAENDRLKVLKMPSQETEFKHLDNQYKDEVNVNALKEKLENLQEQIKVQKRIEEQEKPRKWWGLWRK
SIO_010081: LOOC260_RS11430
subclass of: SO_0000673
so part of: LOOC260_RS11430
location: 65964..66536
location: region:65964-66536:1
so has part: feature:65964-66536:1:exon

WP_020090467.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:65964-66536:1:exon

LOOC260_RS11435
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11435
old locus tag: LOOC260_200820
so part of: sequence
location: 66524..66724
location: region:66524-66724:1
so has part: feature:66524-66724:1:exon
subclass of: SO_0000010

position:66524:1
position: 66524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66724:1
position: 66724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66524-66724:1:exon

LOOC260_RS11435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11435
old locus tag: LOOC260_200820
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKIDDSVKLTSFKGNLYDVMKLILAKRGVSVGRARNPLPHVEDDEMDHVEVVRQHIDDAIAEFTK
SIO_010081: LOOC260_RS11435
subclass of: SO_0000673
so part of: LOOC260_RS11435
location: 66524..66724
location: region:66524-66724:1
so has part: feature:66524-66724:1:exon

WP_020090466.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:66524-66724:1:exon

LOOC260_RS11440
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11440
old locus tag: LOOC260_200830
so part of: sequence
location: complement(66767..68101)
location: region:66767-68101:-1
so has part: feature:66767-68101:-1:exon
subclass of: SO_0000010

position:66767:-1
position: 66767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68101:-1
position: 68101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66767-68101:-1:exon

LOOC260_RS11440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11440
old locus tag: LOOC260_200830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017260795.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)/FAD-dependent oxidoreductase
translation: MTESYQFDVLYLGAGHGAFDGAVPLANSGKKVAIIEADKIGGTCPNRGCNAKITLDNPVQLLRHQERLDGIVNGDLKLDWTANVEHEHEVIDGLPDMITGLLDSVDIEIIHGRGKFVDAHTIEVDQQRYTADKIVIATGLRPHHLDVMGSELTHDSTDFMNLKQLPENIVIIGAGYIGMEFATIANAAGANVTVLLRHNRALRKFNQDYVKQVIADLEKRGVKFIYNAQVDRFEEDGSHFTVSYNDHETLTTDWILDATGRIPNIENIGLDEVGVSYNANGIEVNDHLQTNIDNIYASGDVLDKEQPKLTPTAIFESSYLTQLFTGKTTDAINYPPIPTIVFTSPQIAQVGMSVEEAQQNPDYTIKTNHLPDGWFRQVDKETIGDNTLIYDQDHHLVGAAEVSEHAADAINVLLPAIEFQYTAEQLGRIVPLFPTLGADVWSQI
SIO_010081: LOOC260_RS11440
subclass of: SO_0000673
so part of: LOOC260_RS11440
location: complement(66767..68101)
location: region:66767-68101:-1
so has part: feature:66767-68101:-1:exon

WP_002831210.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:66767-68101:-1:exon

LOOC260_RS11445
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11445
old locus tag: LOOC260_200840
so part of: sequence
location: complement(68254..68784)
location: region:68254-68784:-1
so has part: feature:68254-68784:-1:exon
subclass of: SO_0000010

position:68254:-1
position: 68254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68784:-1
position: 68784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68254-68784:-1:exon

LOOC260_RS11445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11445
old locus tag: LOOC260_200840
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005919347.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MFQGVGNFAITGYILYIMTDFLHRGNQTQSSIQLVNMIMLIFGILMGLVAGPLSNKFKILKLPVGLSTILLAIAGLSLFFLRNNTGIILYALAAGLGMGLWNALDNLLNLKVIPDQNRVAFFLGVYNLGNTITQAIAPVLAAAVISLFGYSGIFIVSFIFSLIGGISMLSIKSLKR
SIO_010081: LOOC260_RS11445
subclass of: SO_0000673
so part of: LOOC260_RS11445
location: complement(68254..68784)
location: region:68254-68784:-1
so has part: feature:68254-68784:-1:exon

WP_005919347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:68254-68784:-1:exon

LOOC260_RS11450
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11450
old locus tag: LOOC260_200850
so part of: sequence
location: complement(68799..69032)
location: region:68799-69032:-1
so has part: feature:68799-69032:-1:exon
subclass of: SO_0000010

position:68799:-1
position: 68799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:69032:-1
position: 69032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68799-69032:-1:exon

LOOC260_RS11450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11450
old locus tag: LOOC260_200850
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010013316.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALGNNGFNVIGALFLSQFRLGFIVFGIFTFAGVLIATLIVHEPSNLDETSTKKKEKFSLKNVKLIFPSWQIGATTT
SIO_010081: LOOC260_RS11450
subclass of: SO_0000673
so part of: LOOC260_RS11450
location: complement(68799..69032)
location: region:68799-69032:-1
so has part: feature:68799-69032:-1:exon

WP_010013316.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:68799-69032:-1:exon

LOOC260_RS11455
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11455
old locus tag: LOOC260_200860
so part of: sequence
location: 69362..69916
location: region:69362-69916:1
so has part: feature:69362-69916:1:exon
subclass of: SO_0000010

position:69362:1
position: 69362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69916:1
position: 69916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69362-69916:1:exon

LOOC260_RS11455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11455
old locus tag: LOOC260_200860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015474649.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKYGYARVSTTDQKLANQIELLKLAGAEKIFQEKFTGTTTERPEFQKLLRVLKTGDTLIVTKLDRFARNTREALAIIQELFKGNVKVNILNMGLIDNTPTGQLVFTIFSAFAQFERDMIVTRTQEGKLYAKQHDPLFREGRPKTYSDEQIRFAYELRKQGMTYKMIERKTGISKRTQQRRFKSI
SIO_010081: LOOC260_RS11455
subclass of: SO_0000673
so part of: LOOC260_RS11455
location: 69362..69916
location: region:69362-69916:1
so has part: feature:69362-69916:1:exon

WP_041095731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:69362-69916:1:exon

LOOC260_RS12340
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS12340
old locus tag: LOOC260_200870
so part of: sequence
location: complement(70603..70779)
location: region:70603-70779:-1
so has part: feature:70603-70779:-1:exon
subclass of: SO_0000010

position:70603:-1
position: 70603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:70779:-1
position: 70779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70603-70779:-1:exon

LOOC260_RS12340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS12340
old locus tag: LOOC260_200870
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISLLEKHPNKITPHIPIEKPKKQLPQRFPVKTPPENPQINPEKIYPEKQPEEPVRRD
SIO_010081: LOOC260_RS12340
subclass of: SO_0000673
so part of: LOOC260_RS12340
location: complement(70603..70779)
location: region:70603-70779:-1
so has part: feature:70603-70779:-1:exon

WP_020090529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:70603-70779:-1:exon

LOOC260_RS11460
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11460
old locus tag: LOOC260_200880
so part of: sequence
location: complement(70779..70997)
location: region:70779-70997:-1
so has part: feature:70779-70997:-1:exon
subclass of: SO_0000010

position:70997:-1
position: 70997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70779-70997:-1:exon

LOOC260_RS11460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11460
old locus tag: LOOC260_200880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003687813.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPWNEQNYPPSMKNLKKVVRKKAIEIANALKEKNYDDKRAISIATEQAEKWYQHRSDLKDDTPFKKNLRRHS
SIO_010081: LOOC260_RS11460
subclass of: SO_0000673
so part of: LOOC260_RS11460
location: complement(70779..70997)
location: region:70779-70997:-1
so has part: feature:70779-70997:-1:exon

WP_010579558.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:70779-70997:-1:exon

LOOC260_RS11465
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11465
old locus tag: LOOC260_200890
pseudo: true
so part of: sequence
location: complement(<71239..71865)
location: region:71239-71865:-1
so has part: feature:71239-71865:-1:exon
subclass of: SO_0000010

position:71239:-1
position: 71239
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:71865:-1
position: 71865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71239-71865:-1:exon

LOOC260_RS11465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11465
old locus tag: LOOC260_200890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS30-like element ISLpl1 family transposase
SIO_010081: LOOC260_RS11465
subclass of: SO_0000673
so part of: LOOC260_RS11465
location: complement(<71239..71865)
location: region:71239-71865:-1
so has part: feature:71239-71865:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:71239-71865:-1:exon

LOOC260_RS11475
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11475
old locus tag: LOOC260_200900
so part of: sequence
location: complement(72345..73160)
location: region:72345-73160:-1
so has part: feature:72345-73160:-1:exon
subclass of: SO_0000010

position:72345:-1
position: 72345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73160:-1
position: 73160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72345-73160:-1:exon

LOOC260_RS11475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11475
old locus tag: LOOC260_200900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002823637.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbohydrate ABC transporter permease
translation: MKKSTKILLGFLFGIIALFWFYPFIIVIINALKGKRGIFQNPLWFTRDFTFSNFKTAYQALDFTSSFFNSLVITVASVIVITLVSAAAAYALSRVKGPFSSILYYLCAGTMLIPFQSIMIPLLSLFGKVNFLNRTSLVIMNTGLSVSLSIILFYGAFQGVSKTLDEAAALDGAYPFKTFVYIIFPAVSPMTGTVVILNAMKIWNDYLLPSLVVNKDGMYTIPLKMYSFFGETNSQWQLALAGLVLSMVPIIILFLLLQKQVMTSVTEGAIK
SIO_010081: LOOC260_RS11475
subclass of: SO_0000673
so part of: LOOC260_RS11475
location: complement(72345..73160)
location: region:72345-73160:-1
so has part: feature:72345-73160:-1:exon

WP_011668823.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:72345-73160:-1:exon

LOOC260_RS11480
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11480
old locus tag: LOOC260_200910
so part of: sequence
location: complement(73164..74018)
location: region:73164-74018:-1
so has part: feature:73164-74018:-1:exon
subclass of: SO_0000010

position:73164:-1
position: 73164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:74018:-1
position: 74018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73164-74018:-1:exon

LOOC260_RS11480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11480
old locus tag: LOOC260_200910
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011668824.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sugar ABC transporter permease
translation: MLIKKHQYLAFVLPAVFFILLIIVVPFLIGIYYSFTDSNGLRSSFIGWKNFEVLFQDSTFLQSFWLTVKFSFVSVILINLVGLAFALIVTSHNNRLTKSLRTIFFMPNLIGGILLGFIWQFIFTSAFQAIAAAFHLDFFKGWLSNPSTGFWGIVILFVWQMSGYIMLIYISFLNAIPKNTIQAAVLDGAKATQIFFFIKLPQLAPAFTISLFLTLANSFKLYEQNLALTNGGPYRSTEMISMYIYNTAFVNFQQGYAQAAGIILFLCVTIVSFIQLALSRKREG
SIO_010081: LOOC260_RS11480
subclass of: SO_0000673
so part of: LOOC260_RS11480
location: complement(73164..74018)
location: region:73164-74018:-1
so has part: feature:73164-74018:-1:exon

WP_021355944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73164-74018:-1:exon

LOOC260_RS11485
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11485
old locus tag: LOOC260_200920
so part of: sequence
location: complement(74024..75322)
location: region:74024-75322:-1
so has part: feature:74024-75322:-1:exon
subclass of: SO_0000010

position:74024:-1
position: 74024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:75322:-1
position: 75322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74024-75322:-1:exon

LOOC260_RS11485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11485
old locus tag: LOOC260_200920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020090441.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter substrate-binding protein
translation: MKKRFFKIAKLTFMLSLSLIVLTCCSFSSQKEKNSKITLNFFNQKPEITAQYQKLARMYHAKHPNVNIQITTSGQGGGAAALQAKFASGEAPDIIMLGGLPEIDRYKDHLINLKDLKASKNIVPNLVSGGISNKRMVGIPVDLEAYGWSYNKAVFAKAGIDASKINNYSEFLKAVEKLNSEKKKIGIDAVFGFNGADTNSIASVSAQFTSLPYNNNLVKAFKSKTFPWKYERQMKNYYDLVKKYNVQPILSVKYDPSVQDLFFNGKVAMIPQGNWIIPTLDGLEKGYVQKNLGMLPFFVKNDGTDRLLTGSSWYLGITKDHPKRQKAAKDFINWMYTSKEAENVIINEMRFVPATKNFDVSRLPDDLSKQIYRIGTSKNAQSPVHKQYPNGFTNQALGPYIQRYFVNGISWKELKKETSAKYRQLREIQSGE
SIO_010081: LOOC260_RS11485
subclass of: SO_0000673
so part of: LOOC260_RS11485
location: complement(74024..75322)
location: region:74024-75322:-1
so has part: feature:74024-75322:-1:exon

WP_041095743.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:74024-75322:-1:exon

LOOC260_RS11490
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11490
old locus tag: LOOC260_200930
so part of: sequence
location: 75450..76589
location: region:75450-76589:1
so has part: feature:75450-76589:1:exon
subclass of: SO_0000010

position:75450:1
position: 75450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76589:1
position: 76589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75450-76589:1:exon

LOOC260_RS11490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11490
old locus tag: LOOC260_200930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020090442.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MSKIQIEHLYKRYDNAENDTLKDINLEIDDKEFVAIIGPSGCGKSTLLRCFSGLEEVTKGKINVDGKRFDNIPPQKRSIAMVFQDYALYPHMTVYNNMAFNLKLSKFSKSEIDSRVKEAAQKLNLTDYLARKPAQLSGGQRQRVALGRAMVRAPEVFLMDEPLSNLDAKLRVSTRQDIIELHKQLGTVTIYVTHDQAEAMAMADKILIMRDGVVQQYGKPEELYDNPRNLFVARFIGSPSMNILKGTLSNKGIFNSGGVNYDLSEFVKKEVLPTDKREIVLGFRPEKVTQVRKSGDNDTAPENSAQKEGFFVLSASKNLAEYMGGHTLVYLKTKDGVNIVTQTPKRIPNDDSHKKLDLYIRNSNIYLFDAKSGLTLQNG
SIO_010081: LOOC260_RS11490
subclass of: SO_0000673
so part of: LOOC260_RS11490
location: 75450..76589
location: region:75450-76589:1
so has part: feature:75450-76589:1:exon

WP_041095745.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:75450-76589:1:exon

LOOC260_RS11495
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11495
old locus tag: LOOC260_200940
so part of: sequence
location: 76874..77341
location: region:76874-77341:1
so has part: feature:76874-77341:1:exon
subclass of: SO_0000010

position:76874:1
position: 76874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77341:1
position: 77341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76874-77341:1:exon

LOOC260_RS11495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11495
old locus tag: LOOC260_200940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003639769.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA starvation/stationary phase protection protein
translation: MKYTKTKAVLNQLVADLSQMSMIIHQTHWYMRGPNFLKLHPLMDEFMEEIDSQLDVISERLIALDGSPYSTLKEMAENTKIQDWPGEWDKTTPERLAHLVDGYRYLEDLYQHGIEVSDVEKDFSTQDIFIGLKTAIEKKIWMIQAELGSAPEIDE
SIO_010081: LOOC260_RS11495
subclass of: SO_0000673
so part of: LOOC260_RS11495
location: 76874..77341
location: region:76874-77341:1
so has part: feature:76874-77341:1:exon

WP_003587210.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:76874-77341:1:exon

LOOC260_RS11500
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11500
old locus tag: LOOC260_200950
so part of: sequence
location: complement(77439..77849)
location: region:77439-77849:-1
so has part: feature:77439-77849:-1:exon
subclass of: SO_0000010

position:77439:-1
position: 77439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77849:-1
position: 77849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77439-77849:-1:exon

LOOC260_RS11500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11500
old locus tag: LOOC260_200950
inference: COORDINATES: protein motif:HMM:NF019322.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GntR family transcriptional regulator
translation: MTTVADAEFLPEAGHLKDNEELIDIRRFRELDGQPYLMEHSYYIKAIVDTIPEEALYGSLFNYFEQQRDVNIGFIDQLLMSEPLPEIAGEFMNLANGAPSLVVKDETYLTTGKMLAFSKQYYDYRRARLFMVKKIR
SIO_010081: LOOC260_RS11500
subclass of: SO_0000673
so part of: LOOC260_RS11500
location: complement(77439..77849)
location: region:77439-77849:-1
so has part: feature:77439-77849:-1:exon

WP_235808591.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:77439-77849:-1:exon

LOOC260_RS11505
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11505
old locus tag: LOOC260_200960
pseudo: true
so part of: sequence
location: complement(<77854..>78282)
location: region:77854-78282:-1
so has part: feature:77854-78282:-1:exon
subclass of: SO_0000010

position:77854:-1
position: 77854
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:78282:-1
position: 78282
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77854-78282:-1:exon

LOOC260_RS11505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11505
old locus tag: LOOC260_200960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012491695.1
GO function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: family 1 glycosylhydrolase
SIO_010081: LOOC260_RS11505
subclass of: SO_0000673
so part of: LOOC260_RS11505
location: complement(<77854..>78282)
location: region:77854-78282:-1
so has part: feature:77854-78282:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:77854-78282:-1:exon

LOOC260_RS11510
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11510
old locus tag: LOOC260_200970
so part of: sequence
location: complement(78296..79225)
location: region:78296-79225:-1
so has part: feature:78296-79225:-1:exon
subclass of: SO_0000010

position:78296:-1
position: 78296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79225:-1
position: 79225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78296-79225:-1:exon

LOOC260_RS11510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11510
old locus tag: LOOC260_200970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30-like element ISLpl1 family transposase
translation: MSSITYSERIKIEIFCELGLSNIQMGVRLNRSPSTISYELSRCQPYQAELAQTDAEYKRSRCGRKTKLSDELKQKILNHLRLSWSPGMIAHEFKLATKSIYNWLNQGRIGFSLNDLPEHGVRQRRNVDQRSKYNQSLGRSIEQRPMMINQRNRIGDFELDTVVGPRGHSKAVLLTLIDRKSRLLWAYRLKDRTTATVNEALTKFLTTFNGPVHSFTVDRGTEFSGLVSLESQYGIKTYYCHAYTPAERGSNERFNRNLRYFYPKGTRFEHISAQDLTTTLLQINQRPLKILDWQTPYQVMLTNLSKNSD
SIO_010081: LOOC260_RS11510
subclass of: SO_0000673
so part of: LOOC260_RS11510
location: complement(78296..79225)
location: region:78296-79225:-1
so has part: feature:78296-79225:-1:exon

WP_041095765.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:78296-79225:-1:exon

LOOC260_RS11515
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11515
old locus tag: LOOC260_200980
so part of: sequence
location: complement(79731..80144)
location: region:79731-80144:-1
so has part: feature:79731-80144:-1:exon
subclass of: SO_0000010

position:79731:-1
position: 79731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80144:-1
position: 80144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79731-80144:-1:exon

LOOC260_RS11515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11515
old locus tag: LOOC260_200980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014216285.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMTESRQKKPGFFTKDNSEKDTLKKGSGLLDKSYKPDPQPKTLYRPEPTIEANNSSRSTQGFGNKSERKSLVLPAEQYYQFMALLDQSAFSYTYELLGDQMQPQIDKMSQVERQMFDMKVAQLREKDEKKKRTRKKS
SIO_010081: LOOC260_RS11515
subclass of: SO_0000673
so part of: LOOC260_RS11515
location: complement(79731..80144)
location: region:79731-80144:-1
so has part: feature:79731-80144:-1:exon

WP_041095767.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:79731-80144:-1:exon

LOOC260_RS11520
type: Gene
subclass of: SO_0000704
RO_0002162: 1291742
locus tag: LOOC260_RS11520
old locus tag: LOOC260_200990
so part of: sequence
location: complement(80141..81016)
location: region:80141-81016:-1
so has part: feature:80141-81016:-1:exon
subclass of: SO_0000010

position:80141:-1
position: 80141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81016:-1
position: 81016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80141-81016:-1:exon

LOOC260_RS11520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1291742
locus tag: LOOC260_RS11520
old locus tag: LOOC260_200990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000769533.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MNLKRPLTITVANQKGGAGKSTITRYLAYSLSLHGYHVLVVDEDPQSNTTKSFVVTKEHNEPDSVFVLDKTMMAGIRDHDLTDLVVNILPNLDLIPAHYDLKNLTNYLSKQYGVAEEGDANYHEVKSKKLFFLRELLEPLKSRGTYDFIFIDTPPTSSDYTDSAVGASDYVLVAFQTQSDSLDGAHNFIFNPDELPEKVNEFGVPTDVLGILPNQMQRSGSIDETVMQDAVNFFGKENMFKTIVPYKRRLQSAPRNGLRNDSYWDKDIFTSFLDNLTNEFIERVNLMESDK
SIO_010081: LOOC260_RS11520
subclass of: SO_0000673
so part of: LOOC260_RS11520
location: complement(80141..81016)
location: region:80141-81016:-1
so has part: feature:80141-81016:-1:exon

WP_041095789.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:80141-81016:-1:exon