Pseudomonas syringae pv. tagetis strain ICMP 4091 plasmid pTagB, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Complete Genome Sequences for Group 6 P. syringae Strains
Submitted (02-MAR-2022) Plant Sciences, University of Arizona, School of Plant Sciences, Tucson, Arizona 857121, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP092925.1.\nBacteria and source DNA available from David Baltrus.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: FEB-2022\nAssembly Method :: Unicycler v. 0.4.8\nAssembly Name :: Psyr_Tag_1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 40.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore\n PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/03/2023 03:34:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,493\nCDSs (total) :: 5,410\nGenes (coding) :: 5,272\nCDSs (with protein) :: 5,272\nGenes (RNA) :: 83\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 4\nPseudo Genes (total) :: 138\nCDSs (without protein) :: 138\nPseudo Genes (ambiguous residues) :: 0 of 138\nPseudo Genes (frameshifted) :: 62 of 138\nPseudo Genes (incomplete) :: 76 of 138\nPseudo Genes (internal stop) :: 33 of 138\nPseudo Genes (multiple problems) :: 27 of 138\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
pathotype strain of Pseudomonas syringae pv. tagetis
COORDINATES: similar to AA sequence:RefSeq:WP_004667954.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002556085.1
COORDINATES: similar to AA sequence:RefSeq:WP_011282506.1
COORDINATES: similar to AA sequence:RefSeq:WP_004661585.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005620862.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
BsuBI/PstI family type II restriction endonuclease
COORDINATES: protein motif:HMM:NF038353.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004668066.1
COORDINATES: protein motif:HMM:NF037472.2
COORDINATES: similar to AA sequence:RefSeq:WP_011267005.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010428885.1
COORDINATES: similar to AA sequence:RefSeq:WP_010657448.1
COORDINATES: similar to AA sequence:RefSeq:WP_010657447.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005758211.1
COORDINATES: similar to AA sequence:RefSeq:WP_020304372.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005734862.1
COORDINATES: similar to AA sequence:RefSeq:WP_005734861.1
COORDINATES: similar to AA sequence:RefSeq:WP_020304266.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011107021.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020313337.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011106976.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004667032.1
COORDINATES: similar to AA sequence:RefSeq:WP_011282535.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004668202.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
transcription termination/antitermination NusG family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016569404.1
COORDINATES: similar to AA sequence:RefSeq:WP_003407112.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019334638.1
COORDINATES: similar to AA sequence:RefSeq:WP_011282553.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_005782475.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_004667061.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019331252.1
COORDINATES: similar to AA sequence:RefSeq:WP_004667984.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569412.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253342.1
COORDINATES: similar to AA sequence:RefSeq:WP_017684942.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_017684943.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782462.1
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011282545.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569418.1
COORDINATES: similar to AA sequence:RefSeq:WP_017684962.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003436834.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_016569421.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020304533.1
COORDINATES: similar to AA sequence:RefSeq:WP_017279381.1
COORDINATES: similar to AA sequence:RefSeq:WP_003436838.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569425.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782542.1
COORDINATES: similar to AA sequence:RefSeq:WP_001773445.1
COORDINATES: similar to AA sequence:RefSeq:WP_010217604.1
COORDINATES: similar to AA sequence:RefSeq:WP_020325468.1
COORDINATES: protein motif:HMM:NF015301.2
adhesin biosynthesis transcription regulatory family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005746135.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017684686.1