Pseudomonas syringae pv. tagetis strain ICMP 4091 plasmid pTagA, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Complete Genome Sequences for Group 6 P. syringae Strains
Submitted (02-MAR-2022) Plant Sciences, University of Arizona, School of Plant Sciences, Tucson, Arizona 857121, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP092924.1.\nBacteria and source DNA available from David Baltrus.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: FEB-2022\nAssembly Method :: Unicycler v. 0.4.8\nAssembly Name :: Psyr_Tag_1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 40.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore\n PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/03/2023 03:34:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,493\nCDSs (total) :: 5,410\nGenes (coding) :: 5,272\nCDSs (with protein) :: 5,272\nGenes (RNA) :: 83\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 4\nPseudo Genes (total) :: 138\nCDSs (without protein) :: 138\nPseudo Genes (ambiguous residues) :: 0 of 138\nPseudo Genes (frameshifted) :: 62 of 138\nPseudo Genes (incomplete) :: 76 of 138\nPseudo Genes (internal stop) :: 33 of 138\nPseudo Genes (multiple problems) :: 27 of 138\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
pathotype strain of Pseudomonas syringae pv. tagetis
COORDINATES: similar to AA sequence:RefSeq:WP_003373511.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002556085.1
COORDINATES: similar to AA sequence:RefSeq:WP_010199916.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_001749323.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782529.1
COORDINATES: similar to AA sequence:RefSeq:WP_020304503.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569389.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569390.1
COORDINATES: similar to AA sequence:RefSeq:WP_010217029.1
GO:0008233 - peptidase activity [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020193752.1
PBECR2 nuclease fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005895504.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010204130.1
COORDINATES: similar to AA sequence:RefSeq:WP_003368762.1
COORDINATES: protein motif:HMM:NF018580.2
COORDINATES: similar to AA sequence:RefSeq:WP_003425025.1
COORDINATES: similar to AA sequence:RefSeq:WP_017279143.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002556007.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003425054.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011267047.1
voltage-gated chloride channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005895490.1
COORDINATES: similar to AA sequence:RefSeq:WP_003425060.1
COORDINATES: similar to AA sequence:RefSeq:WP_003317536.1
COORDINATES: similar to AA sequence:RefSeq:WP_020193418.1
COORDINATES: similar to AA sequence:RefSeq:WP_012723166.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003317533.1
GO:0004427 - inorganic diphosphate phosphatase activity [Evidence IEA]
GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020342588.1
COORDINATES: similar to AA sequence:RefSeq:WP_011105083.1
COORDINATES: similar to AA sequence:RefSeq:WP_010428852.1
COORDINATES: similar to AA sequence:RefSeq:WP_017709554.1
COORDINATES: similar to AA sequence:RefSeq:WP_010924793.1
COORDINATES: similar to AA sequence:RefSeq:WP_017279408.1
COORDINATES: similar to AA sequence:RefSeq:WP_005746122.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_002556077.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003436798.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019648569.1
polyamine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017279418.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782487.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668202.1
transcription termination/antitermination NusG family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016569404.1
COORDINATES: similar to AA sequence:RefSeq:WP_003407112.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005782479.1
COORDINATES: similar to AA sequence:RefSeq:WP_011282553.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_003407107.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666688.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005782472.1
COORDINATES: similar to AA sequence:RefSeq:WP_010199857.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569412.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253342.1
COORDINATES: similar to AA sequence:RefSeq:WP_004667049.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_017684943.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782462.1
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011282545.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569418.1
COORDINATES: similar to AA sequence:RefSeq:WP_017684962.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003436834.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_016569421.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020303948.1
COORDINATES: similar to AA sequence:RefSeq:WP_017279381.1
COORDINATES: similar to AA sequence:RefSeq:WP_005746145.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569425.1
COORDINATES: similar to AA sequence:RefSeq:WP_004667003.1
COORDINATES: similar to AA sequence:RefSeq:WP_010217615.1
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005782536.1
COORDINATES: similar to AA sequence:RefSeq:WP_005782535.1
COORDINATES: similar to AA sequence:RefSeq:WP_003407061.1