Staphylococcus hominis strain FDAARGOS_575 plasmid unnamed1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (13-NOV-2018) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP033731.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 2.3.0, HGAP v. 3.0\nGenome Coverage :: 2300.03357478261x\nSequencing Technology :: PacBio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 23:21:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,260\nCDSs (total) :: 2,175\nGenes (coding) :: 2,141\nCDSs (with protein) :: 2,141\nGenes (RNA) :: 85\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 62\nncRNAs :: 4\nPseudo Genes (total) :: 34\nCDSs (without protein) :: 34\nPseudo Genes (ambiguous residues) :: 0 of 34\nPseudo Genes (frameshifted) :: 14 of 34\nPseudo Genes (incomplete) :: 21 of 34\nPseudo Genes (internal stop) :: 12 of 34\nPseudo Genes (multiple problems) :: 10 of 34\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_000229532.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011251335.1
COORDINATES: similar to AA sequence:RefSeq:WP_000938699.1
COORDINATES: similar to AA sequence:RefSeq:WP_000635273.1
COORDINATES: similar to AA sequence:RefSeq:WP_000690624.1
COORDINATES: similar to AA sequence:RefSeq:WP_002487367.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_002483618.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015365352.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001572573.1
GO:0055085 - transmembrane transport [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002491160.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_001657002.1
COORDINATES: similar to AA sequence:RefSeq:WP_000889978.1
type I toxin-antitoxin system Fst family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002494720.1
COORDINATES: similar to AA sequence:RefSeq:WP_002510522.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017175392.1
COORDINATES: similar to AA sequence:RefSeq:WP_002455828.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001105942.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element IS257 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_002452565.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_002487969.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002449936.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_002489264.1
COORDINATES: similar to AA sequence:RefSeq:WP_001831396.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002485948.1
COORDINATES: similar to AA sequence:RefSeq:WP_001831373.1
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002489266.1
COORDINATES: similar to AA sequence:RefSeq:WP_002440835.1
COORDINATES: similar to AA sequence:RefSeq:YP_501278.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000536961.1
COORDINATES: similar to AA sequence:RefSeq:WP_002505091.1
COORDINATES: similar to AA sequence:RefSeq:WP_000228874.1
COORDINATES: similar to AA sequence:RefSeq:WP_002489619.1
COORDINATES: similar to AA sequence:RefSeq:WP_002449380.1
COORDINATES: similar to AA sequence:RefSeq:WP_001829877.1
COORDINATES: similar to AA sequence:RefSeq:WP_002489261.1
COORDINATES: similar to AA sequence:RefSeq:WP_000282781.1