Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus; Rhodococcus erythropolis group.
Genome Sequence of the Quorum-Quenching Rhodococcus erythropolis Strain R138
Contribution of PacBio technology to the sequencing of Rhodococcus erythropolis R138, a biocontrol agent
Submitted (20-FEB-2014) Centre National de la Recherche Scientifique, Institut des Sciences du vegetal, bat 23 avenue de la terrasse, Gif sur Yvette 91198, France
Submitted (19-MAR-2013) ISV, CNRS, 1 Avenue de la Terrasse, Gif-sur-Yvette 91198, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP007257.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 7.0\nAssembly Name :: ReryR138v2.0\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 35.0x\nSequencing Technology :: 454; Celera Assembler; Celera Assembler\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 14:38:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,294\nCDSs (total) :: 6,223\nGenes (coding) :: 6,158\nCDSs (with protein) :: 6,158\nGenes (RNA) :: 71\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 65\nCDSs (without protein) :: 65\nPseudo Genes (ambiguous residues) :: 0 of 65\nPseudo Genes (frameshifted) :: 34 of 65\nPseudo Genes (incomplete) :: 40 of 65\nPseudo Genes (internal stop) :: 9 of 65\nPseudo Genes (multiple problems) :: 16 of 65\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF021778.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021622.2
COORDINATES: similar to AA sequence:RefSeq:WP_007729743.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019749863.1
COORDINATES: similar to AA sequence:RefSeq:WP_003944763.1
COORDINATES: protein motif:HMM:NF013265.2
COORDINATES: similar to AA sequence:RefSeq:WP_003944686.1
COORDINATES: protein motif:HMM:NF024905.2
COORDINATES: similar to AA sequence:RefSeq:WP_007529088.1
COORDINATES: similar to AA sequence:RefSeq:WP_014036932.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0050151 - oleate hydratase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006944726.1
COORDINATES: similar to AA sequence:RefSeq:WP_006554795.1
COORDINATES: similar to AA sequence:RefSeq:WP_100160676.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003945955.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019746880.1
COORDINATES: similar to AA sequence:RefSeq:WP_019746879.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007734747.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019746877.1
COORDINATES: similar to AA sequence:RefSeq:WP_019746876.1
GO:0004351 - glutamate decarboxylase activity [Evidence IEA]
GO:0006540 - glutamate decarboxylation to succinate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005256028.1
COORDINATES: similar to AA sequence:RefSeq:WP_017935717.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611781.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611765.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019371.2
COORDINATES: protein motif:HMM:NF022633.2
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: protein motif:HMM:NF013122.2
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003942721.1
COORDINATES: similar to AA sequence:RefSeq:WP_014626980.1
COORDINATES: similar to AA sequence:RefSeq:WP_006944713.1
COORDINATES: protein motif:HMM:NF019403.2
heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003945745.1
COORDINATES: protein motif:HMM:NF013086.2
COORDINATES: similar to AA sequence:RefSeq:WP_019746718.1
COORDINATES: similar to AA sequence:RefSeq:WP_019746717.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_019746714.1
COORDINATES: similar to AA sequence:RefSeq:WP_019746713.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011297643.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020416430.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: protein motif:HMM:NF013706.2
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018352957.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005113333.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR02118.1
COORDINATES: similar to AA sequence:RefSeq:WP_013415034.1
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: similar to AA sequence:RefSeq:WP_013674596.1
GO:0004000 - adenosine deaminase activity [Evidence IEA]
GO:0043101 - purine-containing compound salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF013777.2
COORDINATES: similar to AA sequence:RefSeq:WP_011600011.1
COORDINATES: similar to AA sequence:RefSeq:WP_005257506.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013933.2
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020387312.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF024770.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020461271.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006285040.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018171843.1
COORDINATES: similar to AA sequence:RefSeq:WP_016882149.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010549520.1
COORDINATES: protein motif:HMM:NF012488.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_020547005.1
COORDINATES: protein motif:HMM:NF019947.2
COORDINATES: similar to AA sequence:RefSeq:WP_018760873.1
COORDINATES: similar to AA sequence:RefSeq:WP_016882126.1
COORDINATES: protein motif:HMM:NF024799.2
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: protein motif:HMM:NF012312.2
COORDINATES: similar to AA sequence:RefSeq:WP_007532632.1
COORDINATES: similar to AA sequence:RefSeq:WP_016882000.1
COORDINATES: similar to AA sequence:RefSeq:WP_006369012.1
COORDINATES: similar to AA sequence:RefSeq:WP_006369013.1
COORDINATES: similar to AA sequence:RefSeq:WP_006369014.1
COORDINATES: similar to AA sequence:RefSeq:WP_007618396.1
COORDINATES: similar to AA sequence:RefSeq:WP_011595871.1
COORDINATES: similar to AA sequence:RefSeq:WP_007618401.1
COORDINATES: similar to AA sequence:RefSeq:WP_003941498.1
COORDINATES: similar to AA sequence:RefSeq:WP_018538050.1
COORDINATES: similar to AA sequence:RefSeq:WP_014983390.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF024092.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_006550108.1
GO:0015031 - protein transport [Evidence IEA]
twin-arginine translocase TatA/TatE family subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008961807.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: similar to AA sequence:RefSeq:WP_009480673.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_005485011.1
COORDINATES: similar to AA sequence:RefSeq:WP_018832586.1
bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_011731472.1
COORDINATES: similar to AA sequence:RefSeq:WP_003891810.1
COORDINATES: similar to AA sequence:RefSeq:WP_010356448.1
COORDINATES: similar to AA sequence:RefSeq:WP_017680474.1
GO:0018576 - catechol 1,2-dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010356408.1
COORDINATES: protein motif:HMM:NF016129.2
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_015889129.1
COORDINATES: protein motif:HMM:NF012296.2
COORDINATES: similar to AA sequence:RefSeq:WP_020669741.1
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011895913.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013714.2
COORDINATES: similar to AA sequence:RefSeq:WP_020018210.1
COORDINATES: similar to AA sequence:RefSeq:WP_019069278.1
COORDINATES: similar to AA sequence:RefSeq:WP_019069279.1
COORDINATES: similar to AA sequence:RefSeq:WP_005473476.1
COORDINATES: similar to AA sequence:RefSeq:WP_005473474.1
COORDINATES: similar to AA sequence:RefSeq:WP_010356455.1
COORDINATES: similar to AA sequence:RefSeq:WP_005473497.1
COORDINATES: similar to AA sequence:RefSeq:WP_005473509.1
COORDINATES: similar to AA sequence:RefSeq:WP_015102077.1
COORDINATES: similar to AA sequence:RefSeq:WP_019069265.1
COORDINATES: similar to AA sequence:RefSeq:WP_019069263.1
COORDINATES: protein motif:HMM:NF014958.2
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_050768036.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011600603.1
COORDINATES: similar to AA sequence:RefSeq:WP_009473100.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600601.1
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016880911.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006946520.1
COORDINATES: similar to AA sequence:RefSeq:WP_020111214.1
COORDINATES: similar to AA sequence:RefSeq:WP_020111213.1
COORDINATES: similar to AA sequence:RefSeq:WP_019664734.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: protein motif:HMM:TIGR00553.1
GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO:0008153 - para-aminobenzoic acid biosynthetic process [Evidence IEA]
aminodeoxychorismate synthase component I
COORDINATES: similar to AA sequence:RefSeq:WP_019749529.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749528.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749527.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019749526.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733687.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749524.1
COORDINATES: similar to AA sequence:RefSeq:WP_006933579.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733691.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881276.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749521.1
COORDINATES: similar to AA sequence:RefSeq:WP_003945791.1
COORDINATES: similar to AA sequence:RefSeq:WP_019663313.1
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017831244.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831243.1
COORDINATES: similar to AA sequence:RefSeq:WP_007298986.1
MerR family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF024758.2
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020730417.1
COORDINATES: similar to AA sequence:RefSeq:WP_019666696.1
COORDINATES: similar to AA sequence:RefSeq:WP_011594858.1
COORDINATES: similar to AA sequence:RefSeq:WP_007150692.1
COORDINATES: similar to AA sequence:RefSeq:WP_006935908.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881301.1
COORDINATES: similar to AA sequence:RefSeq:WP_003938192.1
COORDINATES: similar to AA sequence:RefSeq:WP_007771958.1
COORDINATES: similar to AA sequence:RefSeq:WP_012836221.1
COORDINATES: similar to AA sequence:RefSeq:WP_003945912.1
COORDINATES: similar to AA sequence:RefSeq:WP_007734735.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749545.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749546.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749548.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
SigB/SigF/SigG family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_086558251.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004023225.1
COORDINATES: similar to AA sequence:RefSeq:WP_005194371.1
COORDINATES: similar to AA sequence:RefSeq:WP_015308974.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
This protein belongs to a clade of FMN-dependent monooxygenases, within a broader family of flavin-dependent oxidoreductases, the luciferase-like monooxygenase (LMM) family, some of whose members use coenzyme F420 rather than FMN; Derived by automated computational analysis using gene prediction method: Protein Homology.
NtaA/DmoA family FMN-dependent monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_006552858.1
COORDINATES: similar to AA sequence:RefSeq:WP_020110493.1
COORDINATES: similar to AA sequence:RefSeq:WP_009774037.1
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]
3,4-dihydroxy-2-butanone-4-phosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_019746262.1
COORDINATES: similar to AA sequence:RefSeq:WP_007735814.1
COORDINATES: similar to AA sequence:RefSeq:WP_019746260.1
COORDINATES: similar to AA sequence:RefSeq:WP_003943571.1
COORDINATES: similar to AA sequence:RefSeq:WP_005515181.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007732429.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005515860.1
COORDINATES: similar to AA sequence:RefSeq:WP_019745387.1
COORDINATES: protein motif:HMM:NF014564.2
COORDINATES: similar to AA sequence:RefSeq:WP_004023212.1
COORDINATES: similar to AA sequence:RefSeq:WP_006865410.1
COORDINATES: similar to AA sequence:RefSeq:WP_007238300.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004023226.1
COORDINATES: similar to AA sequence:RefSeq:WP_004023223.1
COORDINATES: similar to AA sequence:RefSeq:WP_018178124.1
COORDINATES: similar to AA sequence:RefSeq:WP_006358434.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006898966.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006898967.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011599754.1
COORDINATES: similar to AA sequence:RefSeq:WP_016692877.1
COORDINATES: similar to AA sequence:RefSeq:WP_011595215.1
COORDINATES: similar to AA sequence:RefSeq:WP_020109223.1
COORDINATES: similar to AA sequence:RefSeq:WP_016692880.1
COORDINATES: similar to AA sequence:RefSeq:WP_005515646.1
COORDINATES: similar to AA sequence:RefSeq:WP_005515831.1
COORDINATES: similar to AA sequence:RefSeq:WP_004023162.1
COORDINATES: similar to AA sequence:RefSeq:WP_016692881.1
COORDINATES: similar to AA sequence:RefSeq:WP_011209909.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_012865656.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020658758.1
COORDINATES: similar to AA sequence:RefSeq:WP_009077551.1
COORDINATES: protein motif:HMM:NF012517.2
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011209916.1
COORDINATES: similar to AA sequence:RefSeq:WP_020460004.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003942040.1
COORDINATES: similar to AA sequence:RefSeq:WP_003941895.1
COORDINATES: similar to AA sequence:RefSeq:WP_003942056.1
COORDINATES: similar to AA sequence:RefSeq:WP_003941866.1
COORDINATES: similar to AA sequence:RefSeq:WP_010592041.1
COORDINATES: protein motif:HMM:NF017532.2
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008493858.1
COORDINATES: similar to AA sequence:RefSeq:WP_012397797.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: protein motif:HMM:NF015325.2
COORDINATES: protein motif:HMM:NF012544.2
COORDINATES: similar to AA sequence:RefSeq:WP_015309179.1
COORDINATES: protein motif:HMM:NF013412.2
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011209896.1
COORDINATES: protein motif:HMM:TIGR01727.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_007537893.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_005515629.1
COORDINATES: similar to AA sequence:RefSeq:WP_005514331.1
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: similar to AA sequence:RefSeq:WP_005938891.1
COORDINATES: similar to AA sequence:RefSeq:WP_019745477.1
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: similar to AA sequence:RefSeq:WP_007617167.1
GO:0047590 - 5-dehydro-2-deoxygluconokinase activity [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013916.2
COORDINATES: similar to AA sequence:RefSeq:WP_005201178.1
COORDINATES: similar to AA sequence:RefSeq:WP_003594185.1
COORDINATES: protein motif:HMM:NF012481.2
COORDINATES: similar to AA sequence:RefSeq:WP_004023246.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_004023247.1
COORDINATES: protein motif:HMM:NF024859.2
COORDINATES: similar to AA sequence:RefSeq:WP_004023249.1
COORDINATES: similar to AA sequence:RefSeq:WP_005249923.1
COORDINATES: similar to AA sequence:RefSeq:WP_020638827.1
COORDINATES: protein motif:HMM:NF025063.2
COORDINATES: protein motif:HMM:NF024673.2
COORDINATES: similar to AA sequence:RefSeq:WP_018761168.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018192591.1
COORDINATES: similar to AA sequence:RefSeq:WP_014443060.1
COORDINATES: similar to AA sequence:RefSeq:WP_018768905.1
COORDINATES: similar to AA sequence:RefSeq:WP_017834023.1
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_020462162.1
GO:0008740 - L-rhamnose isomerase activity [Evidence IEA]
GO:0019299 - rhamnose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020391681.1
COORDINATES: similar to AA sequence:RefSeq:WP_020110606.1
COORDINATES: similar to AA sequence:RefSeq:WP_007076713.1
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: similar to AA sequence:RefSeq:WP_008376434.1
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_015659767.1
COORDINATES: similar to AA sequence:RefSeq:WP_018224280.1
COORDINATES: similar to AA sequence:RefSeq:WP_019746041.1
COORDINATES: similar to AA sequence:RefSeq:WP_019746040.1
COORDINATES: similar to AA sequence:RefSeq:WP_007529098.1
COORDINATES: similar to AA sequence:RefSeq:WP_012868724.1
GO:0004359 - glutaminase activity [Evidence IEA]
GO:0006541 - glutamine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012690288.1
COORDINATES: similar to AA sequence:RefSeq:WP_017679966.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007728191.1
COORDINATES: similar to AA sequence:RefSeq:WP_012865691.1
COORDINATES: similar to AA sequence:RefSeq:WP_019747194.1
COORDINATES: similar to AA sequence:RefSeq:WP_005179293.1
COORDINATES: protein motif:HMM:NF012242.2
COORDINATES: similar to AA sequence:RefSeq:WP_014928985.1
COORDINATES: similar to AA sequence:RefSeq:WP_005255850.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296974.1
COORDINATES: similar to AA sequence:RefSeq:WP_006554834.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_005565618.1
COORDINATES: similar to AA sequence:RefSeq:WP_014692173.1
COORDINATES: similar to AA sequence:RefSeq:WP_007727030.1
COORDINATES: similar to AA sequence:RefSeq:WP_020372821.1
COORDINATES: similar to AA sequence:RefSeq:WP_018819486.1
COORDINATES: protein motif:HMM:NF015735.2
COORDINATES: similar to AA sequence:RefSeq:WP_019749926.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254557.1
COORDINATES: similar to AA sequence:RefSeq:WP_006554864.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019746206.1
COORDINATES: similar to AA sequence:RefSeq:WP_016333532.1
COORDINATES: similar to AA sequence:RefSeq:WP_018179219.1
COORDINATES: similar to AA sequence:RefSeq:WP_007728182.1
COORDINATES: similar to AA sequence:RefSeq:WP_003944609.1
COORDINATES: similar to AA sequence:RefSeq:WP_019663840.1
COORDINATES: similar to AA sequence:RefSeq:WP_003944658.1
COORDINATES: similar to AA sequence:RefSeq:WP_019750097.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331146.1
COORDINATES: protein motif:HMM:NF014640.2
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007728248.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749743.1
COORDINATES: similar to AA sequence:RefSeq:WP_005560282.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011599907.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749733.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599411.1
COORDINATES: similar to AA sequence:RefSeq:WP_005260666.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019749732.1
COORDINATES: similar to AA sequence:RefSeq:WP_007728264.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749730.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749729.1
COORDINATES: similar to AA sequence:RefSeq:WP_007728270.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749727.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007728275.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749725.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749724.1
COORDINATES: similar to AA sequence:RefSeq:WP_007728283.1
COORDINATES: similar to AA sequence:RefSeq:WP_003938526.1
COORDINATES: similar to AA sequence:RefSeq:WP_007534705.1
COORDINATES: similar to AA sequence:RefSeq:WP_013229079.1
COORDINATES: protein motif:HMM:NF037660.2
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: protein motif:HMM:NF014021.2
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF013003.2
leucine zipper domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005569785.1
COORDINATES: similar to AA sequence:RefSeq:WP_006932878.1
GO:0004806 - triglyceride lipase activity [Evidence IEA]
GO:0016042 - lipid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005512683.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003943366.1
COORDINATES: similar to AA sequence:RefSeq:WP_013414987.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600394.1
COORDINATES: similar to AA sequence:RefSeq:WP_005058785.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611786.1
COORDINATES: similar to AA sequence:RefSeq:WP_009949492.1
COORDINATES: similar to AA sequence:RefSeq:WP_019746610.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
2-hydroxymuconic semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_019746611.1
COORDINATES: similar to AA sequence:RefSeq:WP_019746612.1
COORDINATES: similar to AA sequence:RefSeq:WP_003943511.1
GO:0000334 - 3-hydroxyanthranilate 3,4-dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007732396.1
COORDINATES: similar to AA sequence:RefSeq:WP_020635465.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005517226.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013127364.1
organic hydroperoxide resistance protein
COORDINATES: protein motif:HMM:NF013353.2
aspartate/glutamate racemase family protein
COORDINATES: protein motif:HMM:NF004808.0
GO:0005324 - long-chain fatty acid transporter activity [Evidence IEA]; GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF023594.2
COORDINATES: similar to AA sequence:RefSeq:WP_017198964.1
COORDINATES: protein motif:HMM:NF024772.2
COORDINATES: similar to AA sequence:RefSeq:WP_015804125.1
COORDINATES: similar to AA sequence:RefSeq:WP_019929869.1
COORDINATES: similar to AA sequence:RefSeq:WP_017198963.1
COORDINATES: protein motif:HMM:NF015431.2