Rhodococcus erythropolis R138 plasmid pCRE138, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus; Rhodococcus erythropolis group.
Genome Sequence of the Quorum-Quenching Rhodococcus erythropolis Strain R138
Contribution of PacBio technology to the sequencing of Rhodococcus erythropolis R138, a biocontrol agent
Submitted (20-FEB-2014) Centre National de la Recherche Scientifique, Institut des Sciences du vegetal, bat 23 avenue de la terrasse, Gif sur Yvette 91198, France
Submitted (19-MAR-2013) ISV, CNRS, 1 Avenue de la Terrasse, Gif-sur-Yvette 91198, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP007256.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 7.0\nAssembly Name :: ReryR138v2.0\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 35.0x\nSequencing Technology :: 454; Celera Assembler; Celera Assembler\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 14:38:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,294\nCDSs (total) :: 6,223\nGenes (coding) :: 6,158\nCDSs (with protein) :: 6,158\nGenes (RNA) :: 71\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 65\nCDSs (without protein) :: 65\nPseudo Genes (ambiguous residues) :: 0 of 65\nPseudo Genes (frameshifted) :: 34 of 65\nPseudo Genes (incomplete) :: 40 of 65\nPseudo Genes (internal stop) :: 9 of 65\nPseudo Genes (multiple problems) :: 16 of 65\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF012464.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016362.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003941232.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003941202.1
COORDINATES: similar to AA sequence:RefSeq:WP_003941209.1
COORDINATES: similar to AA sequence:RefSeq:WP_008720936.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749333.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019750057.1
COORDINATES: similar to AA sequence:RefSeq:WP_019750056.1
COORDINATES: similar to AA sequence:RefSeq:WP_008264012.1
COORDINATES: similar to AA sequence:RefSeq:WP_019750054.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019749792.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749791.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019749790.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749789.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749788.1
COORDINATES: similar to AA sequence:RefSeq:WP_019047886.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749786.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749785.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749784.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749783.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749782.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749781.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749780.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749779.1
COORDINATES: similar to AA sequence:RefSeq:WP_012691841.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749777.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019749776.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749775.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749774.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749773.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019749752.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749771.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749764.1
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012691850.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012691851.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_019750017.1
COORDINATES: similar to AA sequence:RefSeq:WP_017885606.1
COORDINATES: similar to AA sequence:RefSeq:WP_006901456.1
COORDINATES: similar to AA sequence:RefSeq:WP_003942480.1
COORDINATES: similar to AA sequence:RefSeq:WP_008720508.1
COORDINATES: similar to AA sequence:RefSeq:WP_007535651.1
COORDINATES: similar to AA sequence:RefSeq:WP_005260838.1
COORDINATES: similar to AA sequence:RefSeq:WP_003941045.1
COORDINATES: protein motif:HMM:NF025200.2
COORDINATES: similar to AA sequence:RefSeq:WP_005250126.1
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_005262688.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006414619.1
COORDINATES: similar to AA sequence:RefSeq:WP_005515165.1
COORDINATES: similar to AA sequence:RefSeq:WP_011995517.1
NAD(P)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_020104903.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017202932.1
COORDINATES: similar to AA sequence:RefSeq:WP_009678738.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749928.1
COORDINATES: similar to AA sequence:RefSeq:WP_003941038.1
COORDINATES: similar to AA sequence:RefSeq:WP_003944682.1
COORDINATES: similar to AA sequence:RefSeq:WP_003941039.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749863.1
COORDINATES: similar to AA sequence:RefSeq:WP_003944686.1
COORDINATES: similar to AA sequence:RefSeq:WP_013417678.1
COORDINATES: similar to AA sequence:RefSeq:WP_018504416.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018504417.1
COORDINATES: similar to AA sequence:RefSeq:WP_014877011.1
COORDINATES: similar to AA sequence:RefSeq:WP_007323079.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749803.1
COORDINATES: similar to AA sequence:RefSeq:WP_020041625.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012655.2