Deinococcus wulumuqiensis R12 plasmid unnamed3, complete sequence.
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
Complete Genome Sequence of Deinococcus wulumuqiensis R12
Submitted (27-FEB-2020) Nanjing Tech University, Nanjing Tech University, No. 30 Pu Zhunan Road, Nanjing, Jiangsu 211800, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP049360.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 100.0x\nSequencing Technology :: Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/06/2023 03:39:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,359\nCDSs (total) :: 3,300\nGenes (coding) :: 3,254\nCDSs (with protein) :: 3,254\nGenes (RNA) :: 59\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 46\nCDSs (without protein) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 6 of 46\nPseudo Genes (incomplete) :: 40 of 46\nPseudo Genes (internal stop) :: 5 of 46\nPseudo Genes (multiple problems) :: 5 of 46\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Deinococcus wulumuqiensis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015231502.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016370.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017871095.1
COORDINATES: protein motif:HMM:NF024784.2
COORDINATES: protein motif:HMM:NF025063.2
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011529382.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011529383.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0051607 - defense response to virus [Evidence IEA]; GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-C CRISPR-associated endonuclease Cas1c
COORDINATES: similar to AA sequence:RefSeq:WP_011529384.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014747985.1
GO:0003674 - molecular_function [Evidence IEA]
type I-C CRISPR-associated protein Cas7/Csd2
COORDINATES: protein motif:HMM:NF021243.2
type I-C CRISPR-associated protein Cas8c/Csd1
COORDINATES: similar to AA sequence:RefSeq:WP_006903555.1
GO:0005575 - cellular_component [Evidence IEA]
type I-C CRISPR-associated protein Cas5c
COORDINATES: similar to AA sequence:RefSeq:WP_006903554.1
CRISPR-associated helicase/endonuclease Cas3
COORDINATES: protein motif:HMM:NF024676.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015406.2
COORDINATES: similar to AA sequence:RefSeq:WP_015231283.1
excalibur calcium-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014686750.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235253.1
COORDINATES: similar to AA sequence:RefSeq:WP_013616007.1
nuclease-related domain-containing DEAD/DEAH box helicase
COORDINATES: similar to AA sequence:RefSeq:WP_013558293.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012693824.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF021637.2
COORDINATES: similar to AA sequence:RefSeq:WP_017871955.1
COORDINATES: similar to AA sequence:RefSeq:WP_006909284.1
type I restriction-modification system endonuclease
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020485613.1
COORDINATES: similar to AA sequence:RefSeq:WP_008318908.1
COORDINATES: similar to AA sequence:RefSeq:WP_004299236.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024986.2