Stenotrophomonas acidaminiphila strain T0-18 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.
Dynamics of class 1 integrons in aerobic biofilm reactors spiked with antibiotics
Submitted (02-SEP-2019) State Key Lab. of Environmental Aquatic Chemistry, Research Center for Eco-Environmental Sciences, Shuangqing Road, Beijing 100085, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP043565.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Link v. v5.1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 14:42:09\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,487\nCDSs (total) :: 3,413\nGenes (coding) :: 3,350\nCDSs (with protein) :: 3,350\nGenes (RNA) :: 74\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 63\nCDSs (without protein) :: 63\nPseudo Genes (ambiguous residues) :: 0 of 63\nPseudo Genes (frameshifted) :: 27 of 63\nPseudo Genes (incomplete) :: 42 of 63\nPseudo Genes (internal stop) :: 5 of 63\nPseudo Genes (multiple problems) :: 11 of 63\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006279894.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020309020.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF036299.2
COORDINATES: similar to AA sequence:RefSeq:WP_017161032.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003829133.1
COORDINATES: similar to AA sequence:RefSeq:WP_005134413.1
COORDINATES: similar to AA sequence:RefSeq:WP_006401347.1
COORDINATES: similar to AA sequence:RefSeq:WP_004167234.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010103414.1
COORDINATES: similar to AA sequence:RefSeq:WP_003829111.1
COORDINATES: similar to AA sequence:RefSeq:WP_004167243.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630636.1
COORDINATES: similar to AA sequence:RefSeq:WP_020309001.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_020308999.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_010103400.1
COORDINATES: similar to AA sequence:RefSeq:WP_003829099.1
P-type conjugative transfer protein TrbG
COORDINATES: protein motif:HMM:NF018934.2
COORDINATES: similar to AA sequence:RefSeq:WP_005864504.1
COORDINATES: protein motif:HMM:NF023351.2
inverse autotransporter beta domain-containing protein
COORDINATES: protein motif:HMM:NF020698.2