Staphylococcus simulans strain IVB6189 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus.
Comparative Genomics of East African Camel-Associated Staphylococcaceae spp.: Diversity and Inheritance of Traits Involved in Host-Pathogen Interactions
Submitted (25-MAR-2022) Institute of Veterinary Bacteriology, University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCP095101.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 474x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 08:23:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,559\nCDSs (total) :: 2,479\nGenes (coding) :: 2,452\nCDSs (with protein) :: 2,452\nGenes (RNA) :: 80\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 27\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 10 of 28\nPseudo Genes (incomplete) :: 22 of 28\nPseudo Genes (internal stop) :: 5 of 28\nPseudo Genes (multiple problems) :: 8 of 28\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Joerg Jores, Anne Liljander, Mario Younan, Jan Felix Drexler, Victor Max Corman, Ilona Glucks
COORDINATES: similar to AA sequence:RefSeq:WP_000477932.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011302314.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002483575.1
COORDINATES: similar to AA sequence:RefSeq:WP_000668388.1
COORDINATES: similar to AA sequence:RefSeq:WP_000228874.1
type I toxin-antitoxin system Fst family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_001105942.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF020438.2
COORDINATES: similar to AA sequence:RefSeq:WP_009382907.1
COORDINATES: similar to AA sequence:RefSeq:WP_017464885.1
COORDINATES: similar to AA sequence:RefSeq:WP_001574882.1
COORDINATES: similar to AA sequence:RefSeq:WP_009384784.1
COORDINATES: similar to AA sequence:RefSeq:WP_019169163.1
COORDINATES: similar to AA sequence:RefSeq:WP_001106057.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018664240.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_000915920.1
COORDINATES: similar to AA sequence:RefSeq:WP_011274385.1
COORDINATES: protein motif:HMM:NF016764.2
COORDINATES: similar to AA sequence:RefSeq:WP_020219999.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_002487763.1
COORDINATES: protein motif:HMM:NF036586.2
COORDINATES: similar to AA sequence:RefSeq:WP_000844416.1
COORDINATES: similar to AA sequence:RefSeq:WP_009382925.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001015311.1
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000074043.1
COORDINATES: similar to AA sequence:RefSeq:WP_000587616.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_002495983.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019884.2
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017176847.1
COORDINATES: protein motif:HMM:NF018914.2
COORDINATES: similar to AA sequence:RefSeq:WP_001829877.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_499374.1
COORDINATES: similar to AA sequence:RefSeq:WP_002477820.1
COORDINATES: similar to AA sequence:RefSeq:WP_002508705.1
COORDINATES: similar to AA sequence:RefSeq:WP_001647597.1
GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid transport system II carrier protein
COORDINATES: similar to AA sequence:RefSeq:WP_002460485.1
COORDINATES: similar to AA sequence:RefSeq:WP_011274491.1